View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5047_high_1 (Length: 503)
Name: NF5047_high_1
Description: NF5047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5047_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 146; Significance: 1e-76; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 320 - 485
Target Start/End: Original strand, 33090324 - 33090489
Alignment:
| Q |
320 |
tcagcaattttcaaaaccccattatccgaaaccaagaaattctccggcttcaaatctctatgaacaatcccattcctatgacaatcataaacaccattaa |
419 |
Q |
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| T |
33090324 |
tcagcaattttcaaaaccccattttccgaaaccaagaaattctccggcttcaaatctctgtgaacaatcccattcctatgacaatcataaaccccactaa |
33090423 |
T |
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| Q |
420 |
caatctgcatcatccaccctttcacttcaccaccaccaaacccatctctgatcacagcacccagat |
485 |
Q |
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| T |
33090424 |
caatctgcatcatccaccctttcacttcaccaccaccaaacccatctctgatcacagtacccagat |
33090489 |
T |
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Target: chr6; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 12 - 226
Target Start/End: Original strand, 33090029 - 33090227
Alignment:
| Q |
12 |
tattcttaatcaaactttacttatctcccaagccaactctggattaccagagtccgaaaaacacactcattaaaatcaagtcatttaactcaaatagtta |
111 |
Q |
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| T |
33090029 |
tattcttaatcaaactttacttatctcccaagccaactccagattaacgtagtccgaaaaacacactcattaaaatcaagtcatttaactcaaatagtta |
33090128 |
T |
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| Q |
112 |
ataaacttcatttaatatcatnnnnnnntccgaattcaaatcctgactagaacaattcttagtcacactttacttacagactgacctaactctgaattac |
211 |
Q |
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| T |
33090129 |
ataaacttcat----------------acccgaattcaaatccggactaaaacaagtcttagtcacactttacttaccgactaacctaactccgaattac |
33090212 |
T |
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