View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5048_high_1 (Length: 381)
Name: NF5048_high_1
Description: NF5048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5048_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 24648679 - 24648954
Alignment:
| Q |
1 |
atatatagtagttgggaagctcatgtcagctgtgaatgcaactgcatgactaaatagagatgtcaaaaacagtagcattgttatgggtggtggttggaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24648679 |
atatatagtagttgggaagctcatgtcagctgtgaatgcaactgcatgactaaatagagatgtcaaaaacagtagcattgttatgggtggtggttggaat |
24648778 |
T |
|
| Q |
101 |
gggttagtgtttaaaccttgatatttccattgcagctaaaggcaccaacaaacccatcagaataaaataaactttatagtacttatgcgtaatcatttta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24648779 |
gggttagtgtttaaaccttgatatttccattgcagctaaaggcaccaacaaacccatcagaataaaataaactttatagtacttatgcgtaatcatttta |
24648878 |
T |
|
| Q |
201 |
ttttgattggagaaaacaaaaagagaagaaaagtgtatagtattttatattttcgaaagaaacaggatcaagatca |
276 |
Q |
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| T |
24648879 |
ttttgattggagaaaacaaaaagagaagaaaagtgtatattttacttttttttggaaagaaacaagatcaagatca |
24648954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 24693281 - 24693485
Alignment:
| Q |
1 |
atatatagtagttgggaagctcatgtcagctgtgaatgcaactgcatgactaaatagagatgtcaaaaacagtagcattgttatgggtggtggttggaat |
100 |
Q |
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||||||||||| ||| |||||||| ||||||||| ||| |||||| |||| | ||||||||||||||||||| | ||| ||| | | |||||| ||| |
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| T |
24693281 |
atatatagtagctggcaagctcatatcagctgtggatgaaactgcgtgacaacatagagatgtcaaaaacagcaacatagttggagatagtggtttaaat |
24693380 |
T |
|
| Q |
101 |
gggttagtgtttaaaccttgatatttccattgcagctaaaggcaccaacaaacccatcagaataaaataaactttatagtacttatgcgtaatcatttta |
200 |
Q |
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| T |
24693381 |
gggttagtgtttaaagcttcatactt-agttgaagctaaattcaccaacaaacccatcaaaataaaataagcttt---gtaattatgcgtaatcattctg |
24693476 |
T |
|
| Q |
201 |
ttttgattg |
209 |
Q |
| |
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||||||||| |
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| T |
24693477 |
ttttgattg |
24693485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 24641912 - 24642116
Alignment:
| Q |
1 |
atatatagtagttgggaagctcatgtcagctgtgaatgcaactgcatgactaaatagagatgtcaaaaacagtagcattgttatgggtggtggttggaat |
100 |
Q |
| |
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||||||||||| || |||||||| ||||||||| ||| |||||| |||| | ||||||||||||||||||| | ||||||| || | ||||||| || |
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| T |
24641912 |
atatatagtagctgacaagctcatatcagctgtggatgaaactgcgtgacaacatagagatgtcaaaaacagcaacattgttggggatagtggttgaaac |
24642011 |
T |
|
| Q |
101 |
gggttagtgtttaaaccttgatatttccattgcagctaaaggcaccaacaaacccatcagaataaaataaactttatagtacttatgcgtaatcatttta |
200 |
Q |
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||||| ||||||||| ||| ||| || ||| |||||||| |||||||||||||||||||| ||| ||| |||| ||| ||| ||||||||||| | |
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| T |
24642012 |
gggttggtgtttaaagcttcatactt-agttgaagctaaagtcaccaacaaacccatcagaaaaaagtaagcttt---gtaattacgcgtaatcattctg |
24642107 |
T |
|
| Q |
201 |
ttttgattg |
209 |
Q |
| |
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||||||||| |
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|
| T |
24642108 |
ttttgattg |
24642116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 101 - 209
Target Start/End: Original strand, 24694467 - 24694571
Alignment:
| Q |
101 |
gggttagtgtttaaaccttgatatttccattgcagctaaaggcaccaacaaacccatcagaataaaataaactttatagtacttatgcgtaatcatttta |
200 |
Q |
| |
|
||||||||||||||| ||| ||| || ||| |||||||| |||||||||||||||||||||||||||| |||| ||| ||| ||||||||||| | |
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| T |
24694467 |
gggttagtgtttaaagcttcatacttag-ttgaagctaaagacaccaacaaacccatcagaataaaataagcttt---gtaattacgcgtaatcattctg |
24694562 |
T |
|
| Q |
201 |
ttttgattg |
209 |
Q |
| |
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||||||||| |
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|
| T |
24694563 |
ttttgattg |
24694571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 24733380 - 24733206
Alignment:
| Q |
1 |
atatatagtagttgggaagctcatgtcagctgtgaatgcaactgcatgactaaatagagatgtcaaaaacagtagcattgttatgggtggtggttggaat |
100 |
Q |
| |
|
||||||||||| ||| |||||||| ||||||||| ||| ||||| |||| | ||||||||||||||||||| | || ||| || || |||||| ||| |
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| T |
24733380 |
atatatagtagctggcaagctcatatcagctgtggatgaaactgtgtgacaacatagagatgtcaaaaacagcaacaaagttggggatgatggttgaaat |
24733281 |
T |
|
| Q |
101 |
gggt------tagtgtttaaaccttgatatttccattgcagctaaaggcaccaacaaacccatcagaataaaataa |
170 |
Q |
| |
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|||| |||| |||||| ||| ||| || | |||||||||||| |||||||| ||||| |||||||||||| |
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| T |
24733280 |
gggttagtactagtttttaaagcttcatactt-cgttgcagctaaagccaccaacatgcccattagaataaaataa |
24733206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 24634348 - 24634415
Alignment:
| Q |
5 |
atagtagttgggaagctcatgtcagctgtgaatgcaactgcatgactaaatagagatgtcaaaaacag |
72 |
Q |
| |
|
||||||||||| |||||||||||||| || |||||||||||||| ||||| ||| || |||||||| |
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|
| T |
24634348 |
atagtagttggtaagctcatgtcagccatggttgcaactgcatgacaaaatacagaagtaaaaaacag |
24634415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 123
Target Start/End: Original strand, 24687619 - 24687737
Alignment:
| Q |
5 |
atagtagttgggaagctcatgtcagctgtgaatgcaactgcatgactaaatagagatgtcaaaaacagtagcattgttatgggtggtggttggaatgggt |
104 |
Q |
| |
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|||||| |||| ||| ||| |||||||||| ||| ||| |||||| ||| | |||||||||||| || | || ||| ||||| | ||||||| || | |
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| T |
24687619 |
atagtacttggtaaggtcaagtcagctgtggatgaaacgacatgacaaaagatagatgtcaaaaatagcaacaaggtttggggtgattgttggaagggat |
24687718 |
T |
|
| Q |
105 |
tagtgtttaaaccttgata |
123 |
Q |
| |
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||||||||||||||||||| |
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| T |
24687719 |
tagtgtttaaaccttgata |
24687737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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