View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5048_high_3 (Length: 308)
Name: NF5048_high_3
Description: NF5048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5048_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 193 - 298
Target Start/End: Complemental strand, 17724777 - 17724672
Alignment:
| Q |
193 |
tctagatatttccgcaaccatcaacacgttgcatttgccttaatcaacgaacgcatcttccgccgaaataaccgatcctttttatatacaacagtttcac |
292 |
Q |
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| T |
17724777 |
tctagatatttccgcaaccatcaacacgttgcatttgccttaatcaacgaacgcatcttctgccgaaataaccgatcctttttatatacaacagtttcac |
17724678 |
T |
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| Q |
293 |
aggttc |
298 |
Q |
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||||| |
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| T |
17724677 |
cggttc |
17724672 |
T |
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Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 17724969 - 17724880
Alignment:
| Q |
2 |
catgtcgaccaaaattatgcaatgatccaaacagaaaaattgattatcaagcatcatgagaatgttgcactacattccaaaattttacat |
91 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17724969 |
catgtcgaccaaaattatgcaatgatccaaacacaaaaattgacaatcaagcatcatgagaatgttgcactacattccaaaattttacat |
17724880 |
T |
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