View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5048_low_3 (Length: 326)

Name: NF5048_low_3
Description: NF5048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5048_low_3
NF5048_low_3
[»] chr5 (1 HSPs)
chr5 (1-304)||(6081918-6082205)


Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 6082205 - 6081918
Alignment:
Q  1 aaatgcaataacaactttaaccatataataattaaatcttgtaatcaaataaatattacaatgtaactataatcacaaggaaaatatttaccttaacaaa 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  6082205 aaatacaataacaactttaaccatataataattaaatcttgtaatcaaataaatattacaatgtaactataatcacaaggaaaatatttacctt------ 6082112  T
Q  101 ataatttattccatacttacatgaccttctaagaatgaagttgaagattcataagtttaggtgcaagaaatggttagttagaacatagaagttgagaaag 200  Q
              |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6082111 ----------ccatacttacatgaccttctaagaatgaagttgaaggttgataagtttaggtgcaagaaatggttagttagaacatagaagttgagaaag 6082022  T
Q  201 taaagagaacaatgaatatgataacgtgttgtgcttgatatctcaccgacgctctgagttcaaggaaaatgactcacactcctcaactaacaactatctc 300  Q
    | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6082021 tgaagagaacaatgaatatgataacgtgttgtgtttgatatctcaccgacgctctgagttcaaggaaaatgactcacactcctcaactaacaactatctc 6081922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University