View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5048_low_5 (Length: 237)

Name: NF5048_low_5
Description: NF5048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5048_low_5
NF5048_low_5
[»] chr7 (13 HSPs)
chr7 (1-221)||(4713156-4713376)
chr7 (1-168)||(4854579-4854746)
chr7 (58-220)||(4784926-4785088)
chr7 (58-220)||(4817355-4817517)
chr7 (12-217)||(4698284-4698489)
chr7 (1-217)||(4862695-4862911)
chr7 (65-151)||(4652390-4652476)
chr7 (163-221)||(4847111-4847169)
chr7 (82-151)||(4635744-4635813)
chr7 (65-151)||(4629779-4629865)
chr7 (65-151)||(4665805-4665891)
chr7 (82-151)||(4660688-4660757)
chr7 (82-136)||(4671527-4671581)
[»] chr4 (1 HSPs)
chr4 (82-142)||(18926908-18926968)


Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 4713376 - 4713156
Alignment:
Q  1 tctcttcaactatcacaccttcattgtaacattttttgaacaaagcaaccatgttcactttttccttatccaaagaatgatccaaaggtggtctcgcaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4713376 tctcttcaactatcacaccttcattgtaacattttttgaacaaagcaaccatgttcactttttccttatccaaagaatgatccaaaggtggtctcgcaca 4713277  T
Q  101 caacacctcaagaagcacaactccgaatgagtacacgtcagacttaagagtcaacttgtttcgtaggtagcactctggatccaaatatcctatactaccc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4713276 caacacctcaagaagcacaactccgaatgagtacacgtcagacttaagagtcaacttgtttcgtaggtagcactctggatccaaatatcctatactaccc 4713177  T
Q  201 ttcaccatagtgctgacatga 221  Q
    |||||||||||||||||||||    
T  4713176 ttcaccatagtgctgacatga 4713156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 4854746 - 4854579
Alignment:
Q  1 tctcttcaactatcacaccttcattgtaacattttttgaacaaagcaaccatgttcactttttccttatccaaagaatgatccaaaggtggtctcgcaca 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||||||||||    
T  4854746 tctcttcaactatcactccttcattgtaacattttttgaacaaagcaaccatgttcacttttttcttatccaataaatgatccaaaggtggtctcgcaca 4854647  T
Q  101 caacacctcaagaagcacaactccgaatgagtacacgtcagacttaagagtcaacttgtttcgtaggt 168  Q
    ||||| ||||||||| ||| | ||||| |||||||| |||||||| ||||||||| ||||||||||||    
T  4854646 caacatctcaagaagtacatcaccgaaagagtacacatcagactttagagtcaacctgtttcgtaggt 4854579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 58 - 220
Target Start/End: Complemental strand, 4785088 - 4784926
Alignment:
Q  58 ctttttccttatccaaagaatgatccaaaggtggtctcgcacacaacacctcaagaagcacaactccgaatgagtacacgtcagacttaagagtcaactt 157  Q
    |||||| ||||||||||||| || |||| || |||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| ||||||||| |    
T  4785088 cttttttcttatccaaagaacgaaccaacgggggtctcgcacacaacacctcaagaagcacaacaccgaaagagtacacatcagactttagagtcaacct 4784989  T
Q  158 gtttcgtaggtagcactctggatccaaatatcctatactacccttcaccatagtgctgacatg 220  Q
     | ||| | |||| | |||||||||||||| || | |||||| ||||||||||||||||||||    
T  4784988 ttgtcgcatgtagtattctggatccaaatacccgagactacctttcaccatagtgctgacatg 4784926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 58 - 220
Target Start/End: Complemental strand, 4817517 - 4817355
Alignment:
Q  58 ctttttccttatccaaagaatgatccaaaggtggtctcgcacacaacacctcaagaagcacaactccgaatgagtacacgtcagacttaagagtcaactt 157  Q
    |||||| ||||||||||||  || |||| || |||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| ||||||||  |    
T  4817517 cttttttcttatccaaagaccgaaccaacgggggtctcgcacacaacacctcaagaagcacaacaccgaaagagtacacatcagactttagagtcaatct 4817418  T
Q  158 gtttcgtaggtagcactctggatccaaatatcctatactacccttcaccatagtgctgacatg 220  Q
     | ||| | |||| | |||||||||||||| || | |||||| ||||||||||||||||||||    
T  4817417 ttgtcgcatgtagtattctggatccaaatacccgagactacctttcaccatagtgctgacatg 4817355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 12 - 217
Target Start/End: Complemental strand, 4698489 - 4698284
Alignment:
Q  12 atcacaccttcattgtaacattttttgaacaaagcaaccatgttcactttttccttatccaaagaatgatccaaaggtggtctcgcacacaacacctcaa 111  Q
    ||||||||||||||||||||| ||| |||| ||   || |   || |||||| ||| ||||||||| || |||||||||||||||||||||| |||||||    
T  4698489 atcacaccttcattgtaacatctttggaaccaaaagactaaactcgcttttttcttttccaaagaacgaaccaaaggtggtctcgcacacaatacctcaa 4698390  T
Q  112 gaagcacaactccgaatgagtacacgtcagacttaagagtcaacttgtttcgtaggtagcactctggatccaaatatcctatactacccttcaccatagt 211  Q
    |||||||||| || || ||||||||||| ||||| || |||||| | |  || |||||| | || ||||| ||||| || | ||||||||||||| ||||    
T  4698389 gaagcacaacaccaaaagagtacacgtcggactttagggtcaacctttgacgaaggtagtattcgggatctaaatacccgagactacccttcaccttagt 4698290  T
Q  212 gctgac 217  Q
    ||||||    
T  4698289 gctgac 4698284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 4862695 - 4862911
Alignment:
Q  1 tctcttcaactatcacaccttcattgtaacattttttgaacaaagcaaccatgttcactttttccttatccaaagaatgatccaaaggtggtctcgcaca 100  Q
    ||||||||| ||| ||||||||||||||||||||||  ||| || | || |   || |||||| ||| ||  ||||| || |||| ||||||||||||||    
T  4862695 tctcttcaattatgacaccttcattgtaacatttttgaaaccaaacgactaaactcgcttttttcttttcagaagaacgaaccaatggtggtctcgcaca 4862794  T
Q  101 caacacctcaagaagcacaactccgaatgagtacacgtcagacttaagagtcaacttgtttcgtaggtagcactctggatccaaatatcctatactaccc 200  Q
    ||||||||||||||| ||||| ||||| || |||||||| || || ||||||||| | |  || |||||| | |||||||| |||||||| | |||||||    
T  4862795 caacacctcaagaaggacaacaccgaaagaatacacgtcggattttagagtcaacctttgacgaaggtagtattctggatctaaatatccaagactaccc 4862894  T
Q  201 ttcaccatagtgctgac 217  Q
    |||||||  ||||||||    
T  4862895 ttcaccacggtgctgac 4862911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 65 - 151
Target Start/End: Original strand, 4652390 - 4652476
Alignment:
Q  65 cttatccaaagaatgatccaaaggtggtctcgcacacaacacctcaagaagcacaactccgaatgagtacacgtcagacttaagagt 151  Q
    ||||||||||  | || ||||||||||||| ||||||||||||||||||||||| || |||||||||||||| ||||| || |||||    
T  4652390 cttatccaaatcacgaaccaaaggtggtctagcacacaacacctcaagaagcaccacaccgaatgagtacacatcagattttagagt 4652476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 163 - 221
Target Start/End: Complemental strand, 4847169 - 4847111
Alignment:
Q  163 gtaggtagcactctggatccaaatatcctatactacccttcaccatagtgctgacatga 221  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  4847169 gtaggtaacattctggatccaaatatcctatactacccttcaccatagtgcttacatga 4847111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 82 - 151
Target Start/End: Original strand, 4635744 - 4635813
Alignment:
Q  82 ccaaaggtggtctcgcacacaacacctcaagaagcacaactccgaatgagtacacgtcagacttaagagt 151  Q
    |||||||||| || ||||||||||||||||||||||| || ||||||||||||||||| || ||||||||    
T  4635744 ccaaaggtggcctagcacacaacacctcaagaagcaccacaccgaatgagtacacgtctgatttaagagt 4635813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 65 - 151
Target Start/End: Original strand, 4629779 - 4629865
Alignment:
Q  65 cttatccaaagaatgatccaaaggtggtctcgcacacaacacctcaagaagcacaactccgaatgagtacacgtcagacttaagagt 151  Q
    ||||||||||  | || ||||||||||||| ||||||||||||||||||||||| || || || |||||||||||||| || |||||    
T  4629779 cttatccaaatcacgaaccaaaggtggtctagcacacaacacctcaagaagcaccacaccaaacgagtacacgtcagattttagagt 4629865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 65 - 151
Target Start/End: Original strand, 4665805 - 4665891
Alignment:
Q  65 cttatccaaagaatgatccaaaggtggtctcgcacacaacacctcaagaagcacaactccgaatgagtacacgtcagacttaagagt 151  Q
    ||||||||||  | || ||||||||||||| ||||||||||||||||||||||| || ||||| |||||||| ||||| || |||||    
T  4665805 cttatccaaatcacgaaccaaaggtggtctagcacacaacacctcaagaagcaccacaccgaacgagtacacatcagattttagagt 4665891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 151
Target Start/End: Original strand, 4660688 - 4660757
Alignment:
Q  82 ccaaaggtggtctcgcacacaacacctcaagaagcacaactccgaatgagtacacgtcagacttaagagt 151  Q
    |||| ||||| || ||||||||||||||||||||||| || ||||| |||||||| ||||| || |||||    
T  4660688 ccaatggtggcctagcacacaacacctcaagaagcaccacaccgaacgagtacacttcagattttagagt 4660757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 136
Target Start/End: Original strand, 4671527 - 4671581
Alignment:
Q  82 ccaaaggtggtctcgcacacaacacctcaagaagcacaactccgaatgagtacac 136  Q
    |||||||||| || ||||||||||| |||||||| || || ||||||||||||||    
T  4671527 ccaaaggtggcctagcacacaacacttcaagaagtaccacaccgaatgagtacac 4671581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 82 - 142
Target Start/End: Complemental strand, 18926968 - 18926908
Alignment:
Q  82 ccaaaggtggtctcgcacacaacacctcaagaagcacaactccgaatgagtacacgtcaga 142  Q
    |||||||||| || |||||||| |||||||||||||| || ||||||||||||||||||||    
T  18926968 ccaaaggtggccttgcacacaatacctcaagaagcaccacaccgaatgagtacacgtcaga 18926908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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