View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5049-Insertion-3 (Length: 709)
Name: NF5049-Insertion-3
Description: NF5049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5049-Insertion-3 |
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Alignment Details
Target: chr7 (Bit Score: 433; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 8 - 566
Target Start/End: Original strand, 41429462 - 41430036
Alignment:
| Q |
8 |
ccaaatgcattgagttgttacaaattgacagttttaatgatagaatgtttgagttttcctgtaaagacgagttatatttttagcttccactctatatcga |
107 |
Q |
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| T |
41429462 |
ccaaatgcattgagttgttacaaattgacagttttaatgatagaatgtttgagttttcctgtaaagacgagttatatttttagcttccactctatatcga |
41429561 |
T |
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| Q |
108 |
tcaacaatactgattgtccttcgttgtggttaactggttattgattatagaggtagatatgtatgacaatatttaaggtttgggcaaggaggtaattata |
207 |
Q |
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| T |
41429562 |
tcaacaatactgattgtgcttcgttgtggttaactggttattgattatagaggtagatatgtatgacaatatttaaggtttggacaaggaggtaattata |
41429661 |
T |
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| Q |
208 |
gtactcatca------------tcattctcattttcattctagaaggtagacagtattcgtatgtgggtggcagcttcaaatttgtacacatacatgttt |
295 |
Q |
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| T |
41429662 |
gtactcatcatcattctcattctcattctcattctcattctagaaggtagacagtattcgtatgtgggtggcagcttcaaatttgtacacatacatgttt |
41429761 |
T |
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| Q |
296 |
gatacaaggtacatatacttgtacattacttactttaactgaaataaataggttagcaacaaatacaactgttacatcttcataatatttttcaattaga |
395 |
Q |
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| T |
41429762 |
gatacaaggtacatatacttgtacactacttactttaactgaaataaataggttagcaacaaatacaactgttacatcttcataatatttttcaattaga |
41429861 |
T |
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| Q |
396 |
gtgatgatatgatttgagtctctaagcattttnnnnnnntataatcttgaaaataccaagctactgatttca----nnnnnnnnnnnnnaaacaaagagg |
491 |
Q |
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| T |
41429862 |
gtgatgatatgatttgagcctctaagcattttaaaaaaatataatcttgaaaataccaagctactgatttaattttttattttttttttaaacaaagagg |
41429961 |
T |
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| Q |
492 |
gactacgaaaatgtaatatcccaacagaatcaggaaaaagtaatgagttaatatatgagccggagggtgctcata |
566 |
Q |
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| T |
41429962 |
gactacgaaaatgtaatatcccaacagaatcaggaaaaagtaatgagttaatatatgagccggagggtgctcata |
41430036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 601 - 709
Target Start/End: Original strand, 41430232 - 41430340
Alignment:
| Q |
601 |
atatccacacaaaagttagctttgcggtacgtttaacacaccttaacctcccaatctaattccagcaattagcgaaatttttgaactaactggaactctg |
700 |
Q |
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| T |
41430232 |
atatccacacaaaagttagctttgcggtacgtttaacacaccttaacctcccaatctaattccagcaattagcgaaatttttgaactaactggaaccctg |
41430331 |
T |
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| Q |
701 |
caactccaa |
709 |
Q |
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| T |
41430332 |
caactccaa |
41430340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 602 - 689
Target Start/End: Original strand, 29999644 - 29999731
Alignment:
| Q |
602 |
tatccacacaaaagttagctttgcggtacgtttaacacaccttaacctcccaatctaattccagcaattagcgaaatttttgaactaa |
689 |
Q |
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| T |
29999644 |
tatccacacaaaagttaacttcacggtacatgttacacaccttaacttcccaatccaattctagcaattgacgaattttttgaactaa |
29999731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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