View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5049-Insertion-4 (Length: 690)

Name: NF5049-Insertion-4
Description: NF5049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5049-Insertion-4
NF5049-Insertion-4
[»] chr7 (11 HSPs)
chr7 (365-688)||(41515976-41516298)
chr7 (7-225)||(41521523-41521741)
chr7 (547-686)||(28325236-28325375)
chr7 (373-510)||(28325436-28325573)
chr7 (579-673)||(48312219-48312313)
chr7 (398-497)||(25933075-25933170)
chr7 (579-642)||(16756079-16756142)
chr7 (459-497)||(3986778-3986816)
chr7 (459-506)||(41590693-41590740)
chr7 (590-623)||(22336207-22336240)
chr7 (547-624)||(39981543-39981620)
[»] chr5 (6 HSPs)
chr5 (365-686)||(5976696-5977030)
chr5 (11-225)||(1242321-1242536)
chr5 (398-686)||(223390-223691)
chr5 (459-497)||(29500554-29500592)
chr5 (460-497)||(7491506-7491543)
chr5 (457-497)||(14278532-14278572)
[»] chr8 (2 HSPs)
chr8 (7-225)||(472872-473091)
chr8 (578-666)||(26696689-26696775)
[»] chr4 (7 HSPs)
chr4 (398-686)||(38554927-38555228)
chr4 (459-497)||(21226375-21226413)
chr4 (579-661)||(27850780-27850861)
chr4 (579-666)||(7053364-7053450)
chr4 (583-661)||(52138639-52138717)
chr4 (579-636)||(1829965-1830022)
chr4 (547-623)||(1520039-1520115)
[»] chr1 (7 HSPs)
chr1 (547-623)||(50442833-50442909)
chr1 (579-642)||(3616735-3616798)
chr1 (584-661)||(9226063-9226139)
chr1 (579-661)||(14478458-14478539)
chr1 (594-673)||(46318477-46318555)
chr1 (457-497)||(27585832-27585872)
chr1 (457-497)||(36475810-36475850)
[»] chr2 (4 HSPs)
chr2 (579-661)||(4920903-4920982)
chr2 (459-497)||(33003142-33003180)
chr2 (459-497)||(45114624-45114662)
chr2 (413-497)||(36888693-36888776)
[»] chr3 (6 HSPs)
chr3 (459-495)||(35942630-35942666)
chr3 (579-673)||(24487163-24487255)
chr3 (579-673)||(44602887-44602980)
chr3 (579-636)||(50810750-50810807)
chr3 (579-636)||(50865057-50865114)
chr3 (579-636)||(53622867-53622924)
[»] chr6 (2 HSPs)
chr6 (590-661)||(23392407-23392478)
chr6 (579-636)||(232317-232374)
[»] scaffold0472 (1 HSPs)
scaffold0472 (547-609)||(576-638)
[»] scaffold0169 (1 HSPs)
scaffold0169 (459-497)||(27026-27064)
[»] scaffold0013 (1 HSPs)
scaffold0013 (547-666)||(32759-32878)


Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-137; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 365 - 688
Target Start/End: Original strand, 41515976 - 41516298
Alignment:
Q  365 gaagaggacgtgttaatgatctggatgtgtgtgaggaattaaagtttatgttgttcatgggtcgatgaatttatggtcattagtttagttgctattgttg 464  Q
    ||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  41515976 gaagaggacgtgttactgatctgggtgtgtttgaggaattaaagtttatgttgttcatgggttgatgaatttatggtcattagtttagttgctattgttg 41516075  T
Q  465 atggtggtggaggtgtagtgatgagatgatgatattattgatgaatttctggannnnnnnatgaagcttgatgaaaagcgataagaagatgaagaatggg 564  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||||| |||| |||||||||||||||||||||    
T  41516076 atggtggtggaggtgtagtgatgagatgatgatattattgatgaatttatggatttttttatgaagcttgatg-aaagtgataagaagatgaagaatggg 41516174  T
Q  565 atataaagttagccgttgttgactcacagtaagataaaatagacttgcgcaatctaatgatactcctttaaataaaaaagatcaaacgatttaaattt-a 663  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |    
T  41516175 atataaagttagccgttgttgactcacagtaagataaaatagacttgcgcaatccaatgacactcctttaaataaaaaagatcaaacgatttaaatttaa 41516274  T
Q  664 aaatttaataaaggtctatggtata 688  Q
    |||||||||||| ||||||||||||    
T  41516275 aaatttaataaa-gtctatggtata 41516298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 7 - 225
Target Start/End: Complemental strand, 41521741 - 41521523
Alignment:
Q  7 acatattgtgtgtaatatacatgtacatgatatctaatgatcaggatttattggtgatctgtctttcaacaaaagaaatctgatnnnnnnnttcatgtaa 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||       |||||| ||    
T  41521741 acatattgtgtgtaatatacatgtacatgatatctaatgatcaggatttattggcgatctgtctttcaacaaaagaaatctaataaaaaaattcatgcaa 41521642  T
Q  107 ttatcaaagttaaacaaaacttcttgcagttggaggtcattaccttcttcaaccgttcatgcattcaccaccatagaaaaaagaaagtaaggtctcccat 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  41521641 ttatcaaagttaaacaaaacttcttgcagttggaggtcattaccttcttcaaccgttcatgcattcaccaccatagaaaaaagaaagtaaggtgtcccat 41521542  T
Q  207 tttgaaacctatcggacct 225  Q
    |||||||||||||||||||    
T  41521541 tttgaaacctatcggacct 41521523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 547 - 686
Target Start/End: Complemental strand, 28325375 - 28325236
Alignment:
Q  547 aagaagatgaagaatgggatataaagttagccgttgttgactcacagtaagataaaatagacttgcgcaatctaatgatactcctttaaataaaaaagat 646  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  28325375 aagaagatgaagaatgggatataaagttagccgttgttgactcactgtaagataaaatagacttgcgcaatccaatgatcctcctttaaataaaaaagat 28325276  T
Q  647 caaacgatttaaatttaaaa-tttaataaaggtctatggta 686  Q
    |||||| ||||||||||||| ||||||||| ||||||||||    
T  28325275 caaacggtttaaatttaaaattttaataaa-gtctatggta 28325236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 373 - 510
Target Start/End: Complemental strand, 28325573 - 28325436
Alignment:
Q  373 cgtgttaatgatctggatgtgtgtgaggaattaaagtttatgttgttcatgggtcgatgaatttatggtcattagtttagttgctattgttgatggtggt 472  Q
    ||||||| |||||||| ||| | ||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  28325573 cgtgttactgatctgggtgtctttgacgaattaaagtttatgttgttcatgggttgatgaatctatggtcattagtttagttgctattgttgatggtggt 28325474  T
Q  473 ggaggtgtagtgatgagatgatgatattattgatgaat 510  Q
    |||||||||||||||||||||||||| |||||||||||    
T  28325473 ggaggtgtagtgatgagatgatgatactattgatgaat 28325436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 579 - 673
Target Start/End: Complemental strand, 48312313 - 48312219
Alignment:
Q  579 gttgttgactcacagtaagataaaatagacttgcgcaatctaatgatactcctttaaataaaaaagatcaaacgatttaaatttaaaatttaata 673  Q
    ||||||||||||| |||||||||||||||| |||| |||| |||| |  |||||| || |||||||||||||| ||||||||| |||| ||||||    
T  48312313 gttgttgactcaccgtaagataaaatagacctgcgtaatccaatggtcatccttttaaaaaaaaagatcaaaccatttaaattaaaaaattaata 48312219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 398 - 497
Target Start/End: Complemental strand, 25933170 - 25933075
Alignment:
Q  398 aggaattaaagtttatgttgttcatgggtcgatgaatttatggtcattagtttagttgctattgttgatggtggtggaggtgtagtgatgagatgatgat 497  Q
    |||||||| || || ||||||| ||||||  |||||||| |||| ||||| | |||||   ||||||||||| |||||||||||||||||||||||||||    
T  25933170 aggaattagagcttttgttgtt-atgggttcatgaatttctggtgattagataagttg---ttgttgatggtagtggaggtgtagtgatgagatgatgat 25933075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 579 - 642
Target Start/End: Complemental strand, 16756142 - 16756079
Alignment:
Q  579 gttgttgactcacagtaagataaaatagacttgcgcaatctaatgatactcctttaaataaaaa 642  Q
    ||||||||||||| ||||||||||||| ||||||| ||||||||| | ||||||| || |||||    
T  16756142 gttgttgactcactgtaagataaaatacacttgcgtaatctaatggtcctccttttaaaaaaaa 16756079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 459 - 497
Target Start/End: Complemental strand, 3986816 - 3986778
Alignment:
Q  459 ttgttgatggtggtggaggtgtagtgatgagatgatgat 497  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  3986816 ttgttgatggtggtggaggtgtagtaatgagatgatgat 3986778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 459 - 506
Target Start/End: Original strand, 41590693 - 41590740
Alignment:
Q  459 ttgttgatggtggtggaggtgtagtgatgagatgatgatattattgat 506  Q
    ||||||||||||||||||||||| | ||||||||||||| || |||||    
T  41590693 ttgttgatggtggtggaggtgtaataatgagatgatgatgttgttgat 41590740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 590 - 623
Target Start/End: Complemental strand, 22336240 - 22336207
Alignment:
Q  590 acagtaagataaaatagacttgcgcaatctaatg 623  Q
    ||||||||||||||||||||||| ||||||||||    
T  22336240 acagtaagataaaatagacttgcacaatctaatg 22336207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 547 - 624
Target Start/End: Complemental strand, 39981620 - 39981543
Alignment:
Q  547 aagaagatgaagaatgggatataaagttagccgttgttgactcacagtaagataaaatagacttgcgcaatctaatga 624  Q
    |||||||||||||| |||| |   ||||||  ||||||||||||| ||||||||||||| || |||| |||| |||||    
T  39981620 aagaagatgaagaaagggagaattagttagttgttgttgactcaccgtaagataaaatacacatgcgtaatccaatga 39981543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 365 - 686
Target Start/End: Original strand, 5976696 - 5977030
Alignment:
Q  365 gaagaggacgtgttaatgatctggatgtgtgtgaggaattaaagtttatgttgttcatgggtcgatgaatttatggtcattagtttagttgctattgttg 464  Q
    ||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  5976696 gaagaggacgtgttactgatctgggtgtgtttgaggaattaaagtttatgttgttcatgggttgatgaatttatggtcattagtttagttgctattgttg 5976795  T
Q  465 atggtggtggaggtgtagtgatgagatgatgatattattgatgaatttctggannnnnnnatgaagcttgatgaaaagcgat--------------aaga 550  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||| |||| |||              ||||    
T  5976796 atggtggtggaggtgtagtgatgagatgatgatattattgatgaatttctggatttttttctgaagcttgatg-aaagtgatgaataagaggaaggaaga 5976894  T
Q  551 agatgaagaatgggatataaagttagccgttgttgactcacagtaagataaaatagacttgcgcaatctaatgatactcctttaaataaaaaagatcaaa 650  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||    
T  5976895 agatgaagaatgggatataaagttagccgttgttgactcacagtaagataaaatagacttgcgtaatccaatgatcctcctttaaataaaaaagatcaaa 5976994  T
Q  651 cgatttaaattt-aaaatttaataaaggtctatggta 686  Q
    |  ||||||||| |||||||| |||| ||||||||||    
T  5976995 ctgtttaaatttaaaaatttagtaaa-gtctatggta 5977030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 11 - 225
Target Start/End: Original strand, 1242321 - 1242536
Alignment:
Q  11 attgtgtgtaatatacatgtacatgatatctaa-tgatcaggatttattggtgatctgtctttcaacaaaagaaatctgatnnnnnnnttcatgtaatta 109  Q
    |||||||||||||||||||||||||||||| || ||||||||| ||||||| ||| |||||||||||||||||||||| ||       |||||| |||||    
T  1242321 attgtgtgtaatatacatgtacatgatatccaaatgatcaggacttattggcgatttgtctttcaacaaaagaaatctaataaaaaaattcatgcaatta 1242420  T
Q  110 tcaaagttaaacaaaacttcttgcagttggaggtcattaccttcttcaaccgttcatgcattcaccaccatagaaaaaagaaagtaaggtctcccatttt 209  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||| ||||| |||| |||| ||||||||||    
T  1242421 tcaaagttaaacaaaacttcttgcagttgaaggtcattaccttcttcaacggctcatgcattcaccaccataggaaaaacaaagcaaggcctcccatttt 1242520  T
Q  210 gaaacctatcggacct 225  Q
    ||||||||||||||||    
T  1242521 gaaacctatcggacct 1242536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 398 - 686
Target Start/End: Complemental strand, 223691 - 223390
Alignment:
Q  398 aggaattaaagtttatgttgttcatgggtcgatgaatttatggtcattagtttagttgctattgttgatggtggt-ggaggtgtagtgatgagatgatga 496  Q
    |||||||||||||||||||||| |||| | |||||||||||| || ||| || |||||||||||||||||||||| |||||||||||||||| || ||||    
T  223691 aggaattaaagtttatgttgttaatggtt-gatgaatttatgatcgttaattcagttgctattgttgatggtggtaggaggtgtagtgatgatataatga 223593  T
Q  497 tattattgatgaatttctggannnnnnnatgaagcttgatgaaaagcgat--------------aagaagatgaagaatgggatataaagttagccgttg 582  Q
    |||| ||||||||||||||||       |||||||||||||||||  |||              ||||||||||||||||||||||||||||||  ||||    
T  223592 tattgttgatgaatttctggatttttttatgaagcttgatgaaaat-gatgaataagaggaaggaagaagatgaagaatgggatataaagttagatgttg 223494  T
Q  583 ttgactcacagtaagataaaatagacttgcgcaatctaatgatactcctttaaataaaaaagatcaaacgatttaaatt-taaaatttaataaaggtcta 681  Q
    ||||||||| |||||||||||||||| || | |||| || | | || ||||||||||||||||||||||| ||||||||  ||||||||||||| |||||    
T  223493 ttgactcaccgtaagataaaatagacatgagtaatccaaaggttctactttaaataaaaaagatcaaacggtttaaattaaaaaatttaataaa-gtcta 223395  T
Q  682 tggta 686  Q
    |||||    
T  223394 tggta 223390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 459 - 497
Target Start/End: Original strand, 29500554 - 29500592
Alignment:
Q  459 ttgttgatggtggtggaggtgtagtgatgagatgatgat 497  Q
    ||||||||||||||||| ||||||| |||||||||||||    
T  29500554 ttgttgatggtggtggatgtgtagtaatgagatgatgat 29500592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 497
Target Start/End: Complemental strand, 7491543 - 7491506
Alignment:
Q  460 tgttgatggtggtggaggtgtagtgatgagatgatgat 497  Q
    |||||||||||||||||||||||| || ||||||||||    
T  7491543 tgttgatggtggtggaggtgtagtaataagatgatgat 7491506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 457 - 497
Target Start/End: Original strand, 14278532 - 14278572
Alignment:
Q  457 tattgttgatggtggtggaggtgtagtgatgagatgatgat 497  Q
    ||||||||||| ||||||| ||||||| |||||||||||||    
T  14278532 tattgttgatgatggtggaagtgtagtaatgagatgatgat 14278572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 155; Significance: 6e-82; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 7 - 225
Target Start/End: Original strand, 472872 - 473091
Alignment:
Q  7 acatattgtgtgtaatatacatgtacatgatatctaatgatcaggatttattggtgatctgtctttcaacaaaagaaatctgatnnnnnnnttcatgtaa 106  Q
    ||||||||||||||||||||||||||| |||||| |||||| |||||||||||| ||| |||||||||||||||||||||| ||       |||||||||    
T  472872 acatattgtgtgtaatatacatgtacacgatatccaatgattaggatttattggcgatttgtctttcaacaaaagaaatctaataaaaaaattcatgtaa 472971  T
Q  107 ttatcaaagttaaacaaaa-cttcttgcagttggaggtcattaccttcttcaaccgttcatgcattcaccaccatagaaaaaagaaagtaaggtctccca 205  Q
    || ||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  472972 ttgtcaaagttaaaaaaaaacttcttgcagttggaggtcattaccttcttcaaccgctcatgcattcaccaccatagaaaaaagaaagtaaggtctccca 473071  T
Q  206 ttttgaaacctatcggacct 225  Q
    ||||||||||||||||||||    
T  473072 ttttgaaacctatcggacct 473091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 578 - 666
Target Start/End: Complemental strand, 26696775 - 26696689
Alignment:
Q  578 cgttgttgactcacagtaagataaaatagacttgcgcaatctaatgatactcctttaaataaaaaagatcaaacgatttaaatttaaaa 666  Q
    |||||||||||||| | |||||| | ||||| |||  ||||||| ||| ||| ||||| |||||||||||||||| |||||||| ||||    
T  26696775 cgttgttgactcacgg-aagatacagtagacatgcataatctaacgatcctcttttaa-taaaaaagatcaaacggtttaaattaaaaa 26696689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 121; Significance: 1e-61; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 398 - 686
Target Start/End: Original strand, 38554927 - 38555228
Alignment:
Q  398 aggaattaaagtttatgttgttcatgggtcgatgaatttatggtcattagtttagttgctattgttgatggtggt-ggaggtgtagtgatgagatgatga 496  Q
    ||||||||||||||||||||||||||| | |||||||||||| || ||| || |||||||||||||||||||||| |||||||||||||||| |||||||    
T  38554927 aggaattaaagtttatgttgttcatggtt-gatgaatttatgatcgttaattcagttgctattgttgatggtggtaggaggtgtagtgatgatatgatga 38555025  T
Q  497 tattattgatgaatttctggannnnnnnatgaagcttgatgaaaagcgat--------------aagaagatgaagaatgggatataaagttagccgttg 582  Q
    |||| ||||||||||||||||       |||||||||||||||||  |||              ||||||||||||||||||||||||||||||  ||||    
T  38555026 tattgttgatgaatttctggatttttttatgaagcttgatgaaaat-gatgaataagaggaaggaagaagatgaagaatgggatataaagttagatgttg 38555124  T
Q  583 ttgactcacagtaagataaaatagacttgcgcaatctaatgatactcctttaaataaaaaagatcaaacgatttaaatt-taaaatttaataaaggtcta 681  Q
    ||||||||| |||||||||||||||| || | |||| |||| | |||||||||||||||||||||||||| ||||||||  ||||||||||||| |||||    
T  38555125 ttgactcaccgtaagataaaatagacatgtgtaatccaatggttctcctttaaataaaaaagatcaaacggtttaaattaaaaaatttaataaa-gtcta 38555223  T
Q  682 tggta 686  Q
    |||||    
T  38555224 tggta 38555228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 459 - 497
Target Start/End: Original strand, 21226375 - 21226413
Alignment:
Q  459 ttgttgatggtggtggaggtgtagtgatgagatgatgat 497  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  21226375 ttgttgatggtggtggaggtgtagtaatgagatgatgat 21226413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 579 - 661
Target Start/End: Original strand, 27850780 - 27850861
Alignment:
Q  579 gttgttgactcacagtaagataaaatagacttgcgcaatctaatgatactcctttaaataaaaaagatcaaacgatttaaatt 661  Q
    ||||||||| ||| |||||||||||||||  ||||| ||| |||||| |||||||||| |||||  |||||||| ||||||||    
T  27850780 gttgttgacacaccgtaagataaaatagatatgcgc-atccaatgatcctcctttaaaaaaaaagaatcaaacggtttaaatt 27850861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 579 - 666
Target Start/End: Complemental strand, 7053450 - 7053364
Alignment:
Q  579 gttgttgactcacagtaagataaaatagacttgcgcaatctaatgatactcctttaaataaaaaagatcaaacgatttaaatttaaaa 666  Q
    ||||||||||||| | |||||| | ||||| |||   |||||| ||| ||| ||||| ||||||||||||||||||||||||| ||||    
T  7053450 gttgttgactcactgaaagatacagtagacatgcatgatctaacgatcctcttttaa-taaaaaagatcaaacgatttaaattaaaaa 7053364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 583 - 661
Target Start/End: Original strand, 52138639 - 52138717
Alignment:
Q  583 ttgactcacagtaagataaaatagacttgcgcaatctaatgatactcctttaaataaaaaagatcaaacgatttaaatt 661  Q
    ||||||||| ||||||||||||| || |||| |||| ||| |  ||||||| || |||||| |||||||| ||||||||    
T  52138639 ttgactcaccgtaagataaaatacacatgcgtaatccaataaccctccttttaaaaaaaaaaatcaaacggtttaaatt 52138717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 579 - 636
Target Start/End: Complemental strand, 1830022 - 1829965
Alignment:
Q  579 gttgttgactcacagtaagataaaatagacttgcgcaatctaatgatactcctttaaa 636  Q
    ||||||||||||  |||||||||||||||| | || ||||||||| | ||||||||||    
T  1830022 gttgttgactcaacgtaagataaaatagacctacgtaatctaatggtcctcctttaaa 1829965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 547 - 623
Target Start/End: Complemental strand, 1520115 - 1520039
Alignment:
Q  547 aagaagatgaagaatgggatataaagttagccgttgttgactcacagtaagataaaatagacttgcgcaatctaatg 623  Q
    |||||||||||||| |||| | | | ||||  |||||||| |||| ||||||||||||| |||| || |||||||||    
T  1520115 aagaagatgaagaaagggagacataattaggtgttgttgattcaccgtaagataaaatacacttacgtaatctaatg 1520039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 547 - 623
Target Start/End: Complemental strand, 50442909 - 50442833
Alignment:
Q  547 aagaagatgaagaatgggatataaagttagccgttgttgactcacagtaagataaaatagacttgcgcaatctaatg 623  Q
    ||||||||||||||||||||||| ||||||  |||||| || ||| |||||||||||||||| | || |||||||||    
T  50442909 aagaagatgaagaatgggatatatagttagttgttgttaacccaccgtaagataaaatagacatacgtaatctaatg 50442833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 579 - 642
Target Start/End: Original strand, 3616735 - 3616798
Alignment:
Q  579 gttgttgactcacagtaagataaaatagacttgcgcaatctaatgatactcctttaaataaaaa 642  Q
    |||||||||||||  |||||||||||| ||||||| ||||||||| | |||||||||| |||||    
T  3616735 gttgttgactcactctaagataaaatacacttgcgtaatctaatggtcctcctttaaaaaaaaa 3616798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 584 - 661
Target Start/End: Original strand, 9226063 - 9226139
Alignment:
Q  584 tgactcacagtaagataaaatagacttgcgcaatctaatgatactcctttaaataaaaaagatcaaacgatttaaatt 661  Q
    |||||||| |||||||||||||||| ||||  || ||||| | ||| ||||| ||||||||||||||| |||||||||    
T  9226063 tgactcaccgtaagataaaatagacatgcgtgatttaatggttctcttttaa-taaaaaagatcaaacaatttaaatt 9226139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 579 - 661
Target Start/End: Complemental strand, 14478539 - 14478458
Alignment:
Q  579 gttgttgactcacagtaagataaaatagacttgcgcaatctaatgatactcctttaaataaaaaagatcaaacgatttaaatt 661  Q
    ||||||||||||| ||||||||||||| || |||| |||  |||||  ||||||| || |||||| |||||||| ||||||||    
T  14478539 gttgttgactcaccgtaagataaaatacacctgcgtaattcaatgaccctccttttaa-aaaaaaaatcaaacggtttaaatt 14478458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 594 - 673
Target Start/End: Original strand, 46318477 - 46318555
Alignment:
Q  594 taagataaaatagacttgcgcaatctaatgatactcctttaaataaaaaagatcaaacgatttaaatttaaa-atttaata 673  Q
    ||||||||||||||| ||   ||||||||| | ||  |||||| |||||||||||||||||||||||| ||| ||||||||    
T  46318477 taagataaaatagacatgtataatctaatggttct--tttaaaaaaaaaagatcaaacgatttaaattaaaatatttaata 46318555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 457 - 497
Target Start/End: Original strand, 27585832 - 27585872
Alignment:
Q  457 tattgttgatggtggtggaggtgtagtgatgagatgatgat 497  Q
    |||||||| || ||||||||||||||| |||||||||||||    
T  27585832 tattgttgttgatggtggaggtgtagtaatgagatgatgat 27585872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 457 - 497
Target Start/End: Original strand, 36475810 - 36475850
Alignment:
Q  457 tattgttgatggtggtggaggtgtagtgatgagatgatgat 497  Q
    |||||||| || ||||||||||||||| |||||||||||||    
T  36475810 tattgttgttgatggtggaggtgtagtaatgagatgatgat 36475850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 579 - 661
Target Start/End: Original strand, 4920903 - 4920982
Alignment:
Q  579 gttgttgactcacagtaagataaaatagacttgcgcaatctaatgatactcctttaaataaaaaagatcaaacgatttaaatt 661  Q
    ||||||||||||| ||||||||||||| || |||| |||| |||||| |||||||   ||||||| |||||||| ||||||||    
T  4920903 gttgttgactcaccgtaagataaaatacacctgcgtaatccaatgatcctccttt---taaaaaaaatcaaacggtttaaatt 4920982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 459 - 497
Target Start/End: Complemental strand, 33003180 - 33003142
Alignment:
Q  459 ttgttgatggtggtggaggtgtagtgatgagatgatgat 497  Q
    |||||||||||||||||| |||||| |||||||||||||    
T  33003180 ttgttgatggtggtggagatgtagtaatgagatgatgat 33003142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 459 - 497
Target Start/End: Original strand, 45114624 - 45114662
Alignment:
Q  459 ttgttgatggtggtggaggtgtagtgatgagatgatgat 497  Q
    ||||||||||| ||||||||| |||||||||||||||||    
T  45114624 ttgttgatggttgtggaggtgaagtgatgagatgatgat 45114662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 413 - 497
Target Start/End: Complemental strand, 36888776 - 36888693
Alignment:
Q  413 tgttgttcatgggtcgatgaatttatggtcattagtttagttgctattgttgatggtggtggaggtgtagtgatgagatgatgat 497  Q
    ||||||| |||||  ||||||| | |||| ||||| |||| || | ||||| ||||||||||||||||||||||||  |||||||    
T  36888776 tgttgtttatggggtgatgaatct-tggttattagattaggtggtgttgtttatggtggtggaggtgtagtgatgaagtgatgat 36888693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 459 - 495
Target Start/End: Original strand, 35942630 - 35942666
Alignment:
Q  459 ttgttgatggtggtggaggtgtagtgatgagatgatg 495  Q
    ||||||||||||||||||||||||| |||||||||||    
T  35942630 ttgttgatggtggtggaggtgtagtaatgagatgatg 35942666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 579 - 673
Target Start/End: Original strand, 24487163 - 24487255
Alignment:
Q  579 gttgttgactcacagtaagataaaatagacttgcgcaatctaatgatactcctttaaataaaaaagatcaaacgatttaaatttaaaatttaata 673  Q
    |||||||||| || |||||||||||||||  |||  |||| |||| | |||||||||  ||||||||||| || ||||||||| |||| ||||||    
T  24487163 gttgttgacttaccgtaagataaaatagatctgcttaatcaaatggtcctcctttaa--aaaaaagatcatacaatttaaattaaaaaattaata 24487255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 579 - 673
Target Start/End: Original strand, 44602887 - 44602980
Alignment:
Q  579 gttgttgactcacagtaagataaaatagacttgcgcaatctaatgatactcctttaaataaaaaagatcaaacgatttaaatttaaaatttaata 673  Q
    ||||||||||||| ||||||||||||||||  ||| |||| |||  |  |||||| || | ||||||||||||| |||||||| |||| ||||||    
T  44602887 gttgttgactcactgtaagataaaatagacacgcgtaatccaatagttatccttttaa-ataaaagatcaaacggtttaaattaaaaaattaata 44602980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 579 - 636
Target Start/End: Original strand, 50810750 - 50810807
Alignment:
Q  579 gttgttgactcacagtaagataaaatagacttgcgcaatctaatgatactcctttaaa 636  Q
    |||||||| |||| |||||||||||||||| |||| |||| |||| | ||||||||||    
T  50810750 gttgttgattcaccgtaagataaaatagacatgcgtaatccaatggtcctcctttaaa 50810807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 579 - 636
Target Start/End: Complemental strand, 50865114 - 50865057
Alignment:
Q  579 gttgttgactcacagtaagataaaatagacttgcgcaatctaatgatactcctttaaa 636  Q
    |||||||| |||| |||||||||||||||| |||| |||| |||| | ||||||||||    
T  50865114 gttgttgattcaccgtaagataaaatagacatgcgtaatccaatggtcctcctttaaa 50865057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 579 - 636
Target Start/End: Complemental strand, 53622924 - 53622867
Alignment:
Q  579 gttgttgactcacagtaagataaaatagacttgcgcaatctaatgatactcctttaaa 636  Q
    ||||||||||||  |||||||||||||||| |||| |||| |||  ||||||||||||    
T  53622924 gttgttgactcaatgtaagataaaatagacatgcgtaatccaatcgtactcctttaaa 53622867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 590 - 661
Target Start/End: Complemental strand, 23392478 - 23392407
Alignment:
Q  590 acagtaagataaaatagacttgcgcaatctaatgatactcctttaaataaaaaagatcaaacgatttaaatt 661  Q
    |||||||||||||||||||||||  ||||||||| |  || |||||| |||||| |||||||| || |||||    
T  23392478 acagtaagataaaatagacttgcataatctaatggttatcttttaaaaaaaaaatatcaaacggttgaaatt 23392407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 579 - 636
Target Start/End: Complemental strand, 232374 - 232317
Alignment:
Q  579 gttgttgactcacagtaagataaaatagacttgcgcaatctaatgatactcctttaaa 636  Q
    |||||||| |||| |||||||||||||||| |||| |||| |||| | ||||||||||    
T  232374 gttgttgattcaccgtaagataaaatagacatgcgtaatccaatggttctcctttaaa 232317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 547 - 609
Target Start/End: Original strand, 576 - 638
Alignment:
Q  547 aagaagatgaagaatgggatataaagttagccgttgttgactcacagtaagataaaatagact 609  Q
    ||||||||||||||  ||| ||||| ||||  |||||||| ||||||||||||||| ||||||    
T  576 aagaagatgaagaaaaggaaataaaattaggtgttgttgattcacagtaagataaagtagact 638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 459 - 497
Target Start/End: Complemental strand, 27064 - 27026
Alignment:
Q  459 ttgttgatggtggtggaggtgtagtgatgagatgatgat 497  Q
    ||||||||||||||||||||| ||| |||||||||||||    
T  27064 ttgttgatggtggtggaggtgaagtaatgagatgatgat 27026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 547 - 666
Target Start/End: Complemental strand, 32878 - 32759
Alignment:
Q  547 aagaagatgaagaatgggatataaagttagccgttgttgactcacagtaagataaaatagacttgcgcaatctaatgatactcctttaa-ataaaaaaga 645  Q
    ||||||||||||||| | ||||||||||||  |||||||  | || |||||||| | ||||| |||   |||||||| | ||| ||||| | ||||||||    
T  32878 aagaagatgaagaatag-atataaagttagatgttgttggtttaccgtaagatacagtagacatgcatgatctaatggtcctcttttaataaaaaaaaga 32780  T
Q  646 tcaaacgatttaaatttaaaa 666  Q
    ||||||| |||||||| ||||    
T  32779 tcaaacggtttaaattaaaaa 32759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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