View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5049-Insertion-5 (Length: 629)

Name: NF5049-Insertion-5
Description: NF5049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5049-Insertion-5
NF5049-Insertion-5
[»] chr5 (11 HSPs)
chr5 (7-629)||(24005431-24006053)
chr5 (7-528)||(23940703-23941221)
chr5 (363-539)||(24112147-24112323)
chr5 (363-458)||(25613658-25613753)
chr5 (353-461)||(31261808-31261916)
chr5 (363-458)||(32430126-32430221)
chr5 (9-92)||(31261452-31261535)
chr5 (28-67)||(32430513-32430552)
chr5 (377-461)||(14307935-14308019)
chr5 (27-79)||(25613316-25613368)
chr5 (499-539)||(32430042-32430082)
[»] chr3 (3 HSPs)
chr3 (371-546)||(43694073-43694248)
chr3 (423-546)||(43685016-43685139)
chr3 (28-73)||(48445150-48445195)
[»] chr1 (4 HSPs)
chr1 (353-613)||(15498040-15498307)
chr1 (36-98)||(49178500-49178562)
chr1 (39-88)||(49171547-49171596)
chr1 (363-443)||(37997263-37997343)
[»] scaffold1089 (2 HSPs)
scaffold1089 (377-460)||(1239-1322)
scaffold1089 (7-67)||(1632-1692)
[»] chr6 (6 HSPs)
chr6 (31-86)||(7871250-7871305)
chr6 (9-79)||(15398203-15398273)
chr6 (9-79)||(15409990-15410060)
chr6 (33-91)||(23951639-23951697)
chr6 (36-93)||(23950997-23951054)
chr6 (7-67)||(14439273-14439333)
[»] chr4 (2 HSPs)
chr4 (22-72)||(38490540-38490590)
chr4 (381-478)||(51016819-51016916)


Alignment Details
Target: chr5 (Bit Score: 543; Significance: 0; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 7 - 629
Target Start/End: Complemental strand, 24006053 - 24005431
Alignment:
Q  7 acttacctgacgagttactttgtcacattctctcttttcttccaaccaaacttgctttcaccacaacccttctctccaaaagatgggccccattatgtta 106  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24006053 acttacctgatgagttactttgtcacattctctcttttcttccaaccaaacttgctttcaccacaacccttctctccaaaagatgggccccattatgtta 24005954  T
Q  107 ctcactcacagctctttgtttcgacgatgataccgtgaaagacgctgaaggcttcaatcgcttctgtggttttgtagataaactcatgctctttccttct 206  Q
    |||||||||||||||| ||||||||||||||||||||||| ||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24005953 ctcactcacagctcttcgtttcgacgatgataccgtgaaaaacgttgatagcttcaatcgcttctgtggttttgtagataaactcatgctctttccttct 24005854  T
Q  207 gcggccaaccaacctatcaaaacgtttcacctcaaactctctcaattttataaagttgatcatcaaagcttccatgcatgggtagaagccataaaacaac 306  Q
    ||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||    
T  24005853 gcgaccaaccaacctatcaaaacgtttcacctcaaactctctcgattttataaggttgatcatcaaagcttctatgcatgggtagaagccataaaactac 24005754  T
Q  307 gccgcgtcgaggaacttcatctcctcctcgataatgtaacattgaagaatctcacgattttcacctccagaaccctagttgttgtcaaacttgagaggtt 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||    
T  24005753 gccgcgtcgaggaacttcatctcctcctcgataatgtaacattgaagaatctcacgattttcacctccagaaccctagttgttgtcaaacttgcgagctt 24005654  T
Q  407 aaaagttgaaggtgaaaatttgtgtgttgatcttccaaatctcaaaaccctacatctaagatatgtttgttttgaaactcggaataatttcatgaaactt 506  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||  ||||||    
T  24005653 aaaagttgaaggtgaaaatttgtgtgttgatcttccaaatctcaaaaccctacatctaagatatgtttcttttgaaactcagaataatttcagtaaactt 24005554  T
Q  507 cttaaagcttgtcctattctacaaaatttgcatgcttcttttctgatatataggagacatgatgaaaataataaagtagaagaattcaaacccttgttct 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  24005553 cttaaagcttgtcctattctacaaaatttgcatgcttcttttctgttatataggagagctgatgaaaataataaagtagaagaattcaaacccttgttct 24005454  T
Q  607 tgtccaaattggttagagcccga 629  Q
    |||||||||||||||||||||||    
T  24005453 tgtccaaattggttagagcccga 24005431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 7 - 528
Target Start/End: Complemental strand, 23941221 - 23940703
Alignment:
Q  7 acttacctgacgagttactttgtcacattctctcttttcttccaaccaaacttgctttcaccacaacccttctctccaaaagatgggccccattatgtta 106  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||  ||| ||||||||||||||||| ||||||||| | || ||    
T  23941221 acttacctgatgagttactttgtcacattctctcttttcttccaaccaagcttgctttctgcaccacccttctctccaaaaggtgggccccactctgcta 23941122  T
Q  107 ctcactcacagctctttgtttcgacgatgataccgtgaaagacgctgaaggcttcaatcgcttctgtggttttgtagataaactcatgctctttccttct 206  Q
    |||||||||||||||| | ||| ||| |||||| |||||||| |||||  ||||||||||||||||| ||||||||||||| |||||||||| |||||||    
T  23941121 ctcactcacagctcttcgcttcaacggtgatacagtgaaagatgctgacagcttcaatcgcttctgtcgttttgtagataagctcatgctctctccttct 23941022  T
Q  207 gcggccaaccaacctatcaaaacgtttcacctcaaactctctcaattttataaagttgatcatcaaagcttccatgcatgggtagaagccataaaacaac 306  Q
    ||| |||||||||| ||||||||||||||| |||  ||||||| |  |||| ||||||||| |||||||||| ||||||||||||||||    ||||| |    
T  23941021 gcgaccaaccaacccatcaaaacgtttcacttcatcctctctcgaggttatgaagttgatcgtcaaagcttcgatgcatgggtagaagctgccaaacatc 23940922  T
Q  307 gccgcgtcgaggaacttcatctcctcctcgataatgtaacattgaagaatctcacgattttcacctccagaaccctagttgttgtcaaacttgagaggtt 406  Q
    |||  |||||| |  ||||||||  |||| || | ||||||||   || |  ||| ||||| | ||||| ||||||||||| | ||||||||||||| ||    
T  23940921 gccaggtcgagaagtttcatctcaccctcaatgacgtaacatt---gagtaccacaatttttatctccaaaaccctagttgatctcaaacttgagagatt 23940825  T
Q  407 aaaagttgaaggtgaaaatttgtgtgttgatcttccaaatctcaaaaccctacatctaagatatgtttgttttgaaactcggaataatttcatgaaactt 506  Q
    ||||||||||  ||| |||||||||||||||||||||  ||||||||| |||||| |  |  ||||| ||||| | | ||||||| ||||||||||||||    
T  23940824 aaaagttgaaactgataatttgtgtgttgatcttccatctctcaaaactctacatttgggtcatgttagttttcacaatcggaatgatttcatgaaactt 23940725  T
Q  507 cttaaagcttgtcctattctac 528  Q
    ||||| |||||||| |||||||    
T  23940724 cttaatgcttgtccaattctac 23940703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 363 - 539
Target Start/End: Original strand, 24112147 - 24112323
Alignment:
Q  363 attttcacctccagaaccctagttgttgtcaaacttgagaggttaaaagttgaaggtgaaaatttgtgtgttgatcttccaaatctcaaaaccctacatc 462  Q
    |||||||||||   ||||||| ||||| ||||||||||| ||||| | ||||||  | | ||||| | |||||||||||||  |||||||| ||||  |     
T  24112147 attttcacctctcaaaccctatttgttctcaaacttgagtggttacatgttgaaaattataatttctatgttgatcttccatctctcaaaatcctaggtt 24112246  T
Q  463 taagatatgtttgttttgaaactcggaataatttcatgaaacttcttaaagcttgtcctattctacaaaatttgcat 539  Q
    | | ||||||||||| ||||| || |||| ||||||| || |||||||| |||||||||||||||||| ||||||||    
T  24112247 tgaaatatgtttgttgtgaaaatcagaatgatttcattaagcttcttaatgcttgtcctattctacaagatttgcat 24112323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 363 - 458
Target Start/End: Original strand, 25613658 - 25613753
Alignment:
Q  363 attttcacctccagaaccctagttgttgtcaaacttgagaggttaaaagttgaaggtgaaaatttgtgtgttgatcttccaaatctcaaaacccta 458  Q
    ||||||||||||| ||||||||||||| | ||||||||||| |||  |||| ||| |||||||||||||||||||||||||  |||||||| ||||    
T  25613658 attttcacctccaaaaccctagttgttctgaaacttgagagattagtagttaaagctgaaaatttgtgtgttgatcttccatctctcaaaatccta 25613753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 353 - 461
Target Start/End: Original strand, 31261808 - 31261916
Alignment:
Q  353 gaatctcacgattttcacctccagaaccctagttgttgtcaaacttgagaggttaaaagttgaaggtgaaaatttgtgtgttgatcttccaaatctcaaa 452  Q
    ||||| ||| ||||| ||||||  |||||||||| || | ||||||||||| |||  |||| ||| |||||||||||||||||||||||||  |||||||    
T  31261808 gaatcccacaattttaacctcccaaaccctagttattctgaaacttgagagattagtagttaaagctgaaaatttgtgtgttgatcttccatctctcaaa 31261907  T
Q  453 accctacat 461  Q
    | |||||||    
T  31261908 atcctacat 31261916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 363 - 458
Target Start/End: Complemental strand, 32430221 - 32430126
Alignment:
Q  363 attttcacctccagaaccctagttgttgtcaaacttgagaggttaaaagttgaaggtgaaaatttgtgtgttgatcttccaaatctcaaaacccta 458  Q
    |||||||||||||||||||| ||| || |||||||| |||  |||||| ||| || ||| ||||||||| |||||||||||   ||||||||||||    
T  32430221 attttcacctccagaacccttgttattctcaaacttcagaacttaaaaattgtagctgataatttgtgttttgatcttccatcgctcaaaacccta 32430126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 92
Target Start/End: Original strand, 31261452 - 31261535
Alignment:
Q  9 ttacctgacgagttactttgtcacattctctcttttcttccaaccaaacttgctttcaccacaacccttctctccaaaagatgg 92  Q
    |||||||||||  || | |||||||| |||||| ||||||| ||||| || ||||||||||| ||| |||| |||||| |||||    
T  31261452 ttacctgacgatatattatgtcacatactctctcttcttcctaccaatctcgctttcaccaccaccgttctttccaaacgatgg 31261535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 67
Target Start/End: Complemental strand, 32430552 - 32430513
Alignment:
Q  28 gtcacattctctcttttcttccaaccaaacttgctttcac 67  Q
    |||||||||||||||||||||| ||||||||||| |||||    
T  32430552 gtcacattctctcttttcttccgaccaaacttgccttcac 32430513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 377 - 461
Target Start/End: Original strand, 14307935 - 14308019
Alignment:
Q  377 aaccctagttgttgtcaaacttgagaggttaaaagttgaaggtgaaaatttgtgtgttgatcttccaaatctcaaaaccctacat 461  Q
    |||||| |||||| |||||||||||||| ||  ||||| | ||||   ||| ||||||||||||||| | || ||||||||||||    
T  14307935 aacccttgttgttctcaaacttgagagggtacgagttgcaagtgatcgtttttgtgttgatcttccatagcttaaaaccctacat 14308019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 25613316 - 25613368
Alignment:
Q  27 tgtcacattctctcttttcttccaaccaaacttgctttcaccacaacccttct 79  Q
    |||||||| |||||| |||||||||||||| | ||||||||||| ||| ||||    
T  25613316 tgtcacatactctctcttcttccaaccaaattcgctttcaccaccaccgttct 25613368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 499 - 539
Target Start/End: Complemental strand, 32430082 - 32430042
Alignment:
Q  499 tgaaacttcttaaagcttgtcctattctacaaaatttgcat 539  Q
    ||||||||||||| ||||||||||||||| || ||||||||    
T  32430082 tgaaacttcttaatgcttgtcctattctagaagatttgcat 32430042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 1e-27; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 371 - 546
Target Start/End: Complemental strand, 43694248 - 43694073
Alignment:
Q  371 ctccagaaccctagttgttgtcaaacttgagaggttaaaagttgaaggtgaaaatttgtgtgttgatcttccaaatctcaaaaccctacatctaagatat 470  Q
    |||| ||||||||||| || | |||||||||  ||||||| || ||  ||| ||||||||||||||||||||| | ||||||||||||||| | |  |||    
T  43694248 ctcccgaaccctagttattctgaaacttgagcagttaaaaattcaatctgataatttgtgtgttgatcttccatagctcaaaaccctacatttcaactat 43694149  T
Q  471 gtttgttttgaaactcggaataatttcatgaaacttcttaaagcttgtcctattctacaaaatttgcatgcttctt 546  Q
    ||| ||||| ||| |  |||| ||||||| ||||||||||| ||||||||  |||||||| |||||||||||||||    
T  43694148 gttagttttaaaaataagaatgatttcataaaacttcttaatgcttgtccacttctacaagatttgcatgcttctt 43694073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 423 - 546
Target Start/End: Complemental strand, 43685139 - 43685016
Alignment:
Q  423 aatttgtgtgttgatcttccaaatctcaaaaccctacatctaagatatgtttgttttgaaactcggaataatttcatgaaacttcttaaagcttgtccta 522  Q
    |||||||||||| ||||||||   ||||||||||||||| | | ||| ||| ||||| ||| |  |||| ||||| ||||||||||||| ||||||||||    
T  43685139 aatttgtgtgttaatcttccatcgctcaaaaccctacatttcaaatacgttagttttaaaaataagaatgatttcttgaaacttcttaatgcttgtccta 43685040  T
Q  523 ttctacaaaatttgcatgcttctt 546  Q
    || ||||| ||||| |||||||||    
T  43685039 ttgtacaagatttggatgcttctt 43685016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 48445150 - 48445195
Alignment:
Q  28 gtcacattctctcttttcttccaaccaaacttgctttcaccacaac 73  Q
    |||| |||||||||||||| ||||||||||||||| | ||||||||    
T  48445150 gtcatattctctcttttctcccaaccaaacttgctgtaaccacaac 48445195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 6e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 353 - 613
Target Start/End: Original strand, 15498040 - 15498307
Alignment:
Q  353 gaatctcacgattttcacctccagaaccctagttgttgtcaaacttgagaggttaaaagttgaaggtgaaaatttgtgtgttgatcttc-------caaa 445  Q
    ||||| ||| |||||||||||    |||||||||||| |||||| || ||||||| || |||||| |||||||||||||||| ||||||       ||||    
T  15498040 gaatcccacaattttcacctctcataccctagttgttctcaaacatgcgaggttacaacttgaagctgaaaatttgtgtgttcatcttccatctctcaaa 15498139  T
Q  446 tctcaaaaccctacatctaagatatgtttgttttgaaactcggaataatttcatgaaacttcttaaagcttgtcctattctacaaaatttgcatgcttct 545  Q
      ||||||||||| || | | || |||  |||||||||  |  ||| || |||||||||||||||| |||||||||| ||||||| ||||||||  ||||    
T  15498140 agtcaaaaccctatatttgaaatttgtccgttttgaaaagcataatgatgtcatgaaacttcttaatgcttgtcctaatctacaagatttgcatatttct 15498239  T
Q  546 tttctgatatataggagacatgatgaaaataataaagtagaagaattcaaacccttgttcttgtccaa 613  Q
      ||  ||||||| ||||| | | || |||| | | | |||||| || ||| ||||||||||||||||    
T  15498240 catcctatatatatgagacgtaacgagaatagtgaggcagaagagtttaaatccttgttcttgtccaa 15498307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 98
Target Start/End: Original strand, 49178500 - 49178562
Alignment:
Q  36 ctctcttttcttccaaccaaacttgctttcaccacaacccttctctccaaaagatgggcccca 98  Q
    ||||||||||| ||||| ||||| ||||||||||| ||| ||||||||||||||||| |||||    
T  49178500 ctctcttttctcccaacaaaactcgctttcaccaccaccgttctctccaaaagatggacccca 49178562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 49171596 - 49171547
Alignment:
Q  39 tcttttcttccaaccaaacttgctttcaccacaacccttctctccaaaag 88  Q
    |||||||||||||||||| | ||||||||||| ||| |||||||||||||    
T  49171596 tcttttcttccaaccaaattcgctttcaccaccaccgttctctccaaaag 49171547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 363 - 443
Target Start/End: Complemental strand, 37997343 - 37997263
Alignment:
Q  363 attttcacctccagaaccctagttgttgtcaaacttgagaggttaaaagttgaaggtgaaaatttgtgtgttgatcttcca 443  Q
    ||||||| ||||  |||||| |||||| |||||||| | |||||||| |||| |  ||| | |||||||||||||||||||    
T  37997343 attttcatctcccaaacccttgttgttctcaaacttaaaaggttaaatgttggaaatgatactttgtgtgttgatcttcca 37997263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1089 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold1089
Description:

Target: scaffold1089; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 377 - 460
Target Start/End: Complemental strand, 1322 - 1239
Alignment:
Q  377 aaccctagttgttgtcaaacttgagaggttaaaagttgaaggtgaaaatttgtgtgttgatcttccaaatctcaaaaccctaca 460  Q
    ||||||||||||| ||||||||||  ||||| ||||||||| |||||||||||||  |||||||||    ||||||||||||||    
T  1322 aaccctagttgttctcaaacttgaatggttacaagttgaagttgaaaatttgtgtcgtgatcttccgtccctcaaaaccctaca 1239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1089; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 1692 - 1632
Alignment:
Q  7 acttacctgacgagttactttgtcacattctctcttttcttccaaccaaacttgctttcac 67  Q
    |||||||||| || ||| | |||||||| |||||||||||||| |||||| | ||||||||    
T  1692 acttacctgatgaattattatgtcacatactctcttttcttcccaccaaaatcgctttcac 1632  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 31 - 86
Target Start/End: Original strand, 7871250 - 7871305
Alignment:
Q  31 acattctctcttttcttccaaccaaacttgctttcaccacaacccttctctccaaa 86  Q
    ||||||||||||| || ||||||||||| |||||||| ||||||||||| ||||||    
T  7871250 acattctctctttcctcccaaccaaactcgctttcactacaacccttctttccaaa 7871305  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 15398203 - 15398273
Alignment:
Q  9 ttacctgacgagttactttgtcacattctctcttttcttccaaccaaacttgctttcaccacaacccttct 79  Q
    ||||| || |||||| | |||||||| ||||||||||| ||||| ||| ||||||| || |||||||||||    
T  15398203 ttaccagatgagttattgtgtcacatactctcttttctcccaacaaaatttgcttttactacaacccttct 15398273  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 15409990 - 15410060
Alignment:
Q  9 ttacctgacgagttactttgtcacattctctcttttcttccaaccaaacttgctttcaccacaacccttct 79  Q
    ||||| || |||||| | |||||||| ||||||||||| ||||| ||| ||||||| || |||||||||||    
T  15409990 ttaccagatgagttattgtgtcacatactctcttttctcccaacaaaatttgcttttactacaacccttct 15410060  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 33 - 91
Target Start/End: Original strand, 23951639 - 23951697
Alignment:
Q  33 attctctcttttcttccaaccaaacttgctttcaccacaacccttctctccaaaagatg 91  Q
    |||||||||||||| |||||||||||||||||| ||  | |  ||||||||||||||||    
T  23951639 attctctcttttctcccaaccaaacttgctttctccgtagctattctctccaaaagatg 23951697  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 93
Target Start/End: Complemental strand, 23951054 - 23950997
Alignment:
Q  36 ctctcttttcttccaaccaaacttgctttcaccacaacccttctctccaaaagatggg 93  Q
    ||||| ||||| | ||| |||||||||||| |||||||  ||||||||||||||||||    
T  23951054 ctctcctttctccaaacaaaacttgctttctccacaactattctctccaaaagatggg 23950997  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 14439333 - 14439273
Alignment:
Q  7 acttacctgacgagttactttgtcacattctctcttttcttccaaccaaacttgctttcac 67  Q
    |||||||||| || ||| | |||||||| |||||||||||||| |||||| | ||||||||    
T  14439333 acttacctgatgaattattatgtcacatactctcttttcttcccaccaaaatcgctttcac 14439273  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 38490590 - 38490540
Alignment:
Q  22 tactttgtcacattctctcttttcttccaaccaaacttgctttcaccacaa 72  Q
    |||| |||||||||||||||||||| |||||||| |||||||||| |||||    
T  38490590 tactctgtcacattctctcttttctcccaaccaatcttgctttcatcacaa 38490540  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 381 - 478
Target Start/End: Complemental strand, 51016916 - 51016819
Alignment:
Q  381 ctagttgttgtcaaacttgagaggttaaaagttgaaggtgaaaatttgtgtgttgatcttccaaatctcaaaaccctacatctaagatatgtttgttt 478  Q
    ||||||||| | ||||||||||| |||||| ||||| |||| || |||||| |||||||||||    |||||||||||||| | | ||||||| ||||    
T  51016916 ctagttgttataaaacttgagagattaaaaattgaaagtgataagttgtgtattgatcttccatcgttcaaaaccctacatttgaaatatgttggttt 51016819  T

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