View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5049-Insertion-7 (Length: 501)

Name: NF5049-Insertion-7
Description: NF5049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5049-Insertion-7
NF5049-Insertion-7
[»] chr1 (28 HSPs)
chr1 (8-239)||(48589655-48589887)
chr1 (8-239)||(48594739-48594971)
chr1 (8-239)||(48599350-48599582)
chr1 (244-501)||(48594134-48594388)
chr1 (244-501)||(48598745-48598999)
chr1 (244-501)||(48589047-48589305)
chr1 (364-501)||(48153068-48153205)
chr1 (362-501)||(50164618-50164757)
chr1 (362-482)||(28371631-28371751)
chr1 (361-501)||(50164236-50164376)
chr1 (361-474)||(2820957-2821070)
chr1 (362-474)||(12800406-12800518)
chr1 (362-474)||(12799989-12800101)
chr1 (362-474)||(2821425-2821537)
chr1 (361-474)||(33631026-33631139)
chr1 (362-474)||(43756283-43756395)
chr1 (359-474)||(38469221-38469336)
chr1 (361-479)||(28371198-28371316)
chr1 (361-474)||(38328822-38328935)
chr1 (362-474)||(43755849-43755961)
chr1 (360-474)||(38468904-38469018)
chr1 (360-425)||(17151864-17151929)
chr1 (360-428)||(33630475-33630543)
chr1 (390-474)||(38328415-38328499)
chr1 (361-422)||(17151001-17151062)
chr1 (389-424)||(32537672-32537707)
chr1 (362-424)||(32538488-32538550)
chr1 (388-417)||(45065378-45065407)
[»] chr8 (14 HSPs)
chr8 (359-501)||(14197656-14197798)
chr8 (364-501)||(39439760-39439897)
chr8 (364-501)||(39440508-39440644)
chr8 (362-474)||(37657847-37657959)
chr8 (362-474)||(30846016-30846128)
chr8 (362-474)||(41714603-41714715)
chr8 (361-474)||(30846432-30846545)
chr8 (405-474)||(41715203-41715272)
chr8 (362-421)||(31408164-31408223)
chr8 (405-474)||(37658480-37658549)
chr8 (384-428)||(42573602-42573646)
chr8 (388-425)||(35759223-35759260)
chr8 (388-425)||(41348171-41348208)
chr8 (388-424)||(41092199-41092235)
[»] chr3 (30 HSPs)
chr3 (368-501)||(38000201-38000334)
chr3 (363-498)||(42257215-42257350)
chr3 (360-501)||(14788509-14788650)
chr3 (362-474)||(930369-930481)
chr3 (361-474)||(11442091-11442204)
chr3 (362-474)||(21166092-21166204)
chr3 (362-474)||(32473761-32473873)
chr3 (360-501)||(14788272-14788413)
chr3 (361-474)||(929910-930023)
chr3 (361-474)||(32474398-32474511)
chr3 (360-474)||(43521075-43521186)
chr3 (359-474)||(26006714-26006829)
chr3 (363-474)||(50766631-50766740)
chr3 (361-474)||(5113197-5113310)
chr3 (377-474)||(11441664-11441761)
chr3 (362-474)||(20586520-20586632)
chr3 (362-474)||(24394670-24394782)
chr3 (359-474)||(5113644-5113759)
chr3 (360-474)||(36992109-36992223)
chr3 (360-474)||(37017549-37017663)
chr3 (388-490)||(42257982-42258083)
chr3 (362-474)||(20586072-20586184)
chr3 (389-474)||(45000763-45000848)
chr3 (362-474)||(24394247-24394359)
chr3 (362-474)||(26006146-26006258)
chr3 (363-474)||(45000316-45000427)
chr3 (361-474)||(43104713-43104826)
chr3 (360-411)||(50836214-50836265)
chr3 (360-411)||(50839588-50839639)
chr3 (366-403)||(24181950-24181987)
[»] chr5 (16 HSPs)
chr5 (359-501)||(42655649-42655791)
chr5 (362-474)||(5620805-5620917)
chr5 (360-474)||(12330598-12330712)
chr5 (361-474)||(3595776-3595889)
chr5 (362-474)||(8321323-8321435)
chr5 (361-474)||(7858326-7858439)
chr5 (362-474)||(12330148-12330260)
chr5 (381-474)||(16996965-16997058)
chr5 (362-474)||(8320875-8320987)
chr5 (362-474)||(24027187-24027299)
chr5 (389-474)||(24027622-24027707)
chr5 (362-474)||(29759597-29759709)
chr5 (363-474)||(3596229-3596340)
chr5 (360-474)||(7858755-7858869)
chr5 (361-426)||(31078455-31078520)
chr5 (361-419)||(36912245-36912302)
[»] chr6 (17 HSPs)
chr6 (359-474)||(28983228-28983343)
chr6 (360-474)||(34717691-34717805)
chr6 (368-497)||(28535376-28535506)
chr6 (362-474)||(19062759-19062871)
chr6 (361-474)||(34717241-34717354)
chr6 (360-474)||(7635571-7635685)
chr6 (362-474)||(28982782-28982893)
chr6 (361-474)||(7635123-7635236)
chr6 (362-474)||(18290431-18290543)
chr6 (361-474)||(18290214-18290327)
chr6 (361-430)||(2924952-2925021)
chr6 (361-474)||(4348846-4348959)
chr6 (389-474)||(12999413-12999498)
chr6 (388-425)||(10608304-10608341)
chr6 (363-407)||(14496445-14496489)
chr6 (368-501)||(18605767-18605901)
chr6 (388-425)||(930950-930988)
[»] chr7 (23 HSPs)
chr7 (361-474)||(20559745-20559858)
chr7 (361-474)||(20560217-20560330)
chr7 (361-479)||(42901067-42901185)
chr7 (400-497)||(35211940-35212037)
chr7 (362-474)||(33139774-33139886)
chr7 (362-474)||(33140230-33140342)
chr7 (362-474)||(4179637-4179749)
chr7 (361-474)||(4180274-4180387)
chr7 (362-482)||(42900647-42900767)
chr7 (360-474)||(30414179-30414293)
chr7 (362-474)||(40641106-40641218)
chr7 (360-474)||(25137410-25137524)
chr7 (362-474)||(40640653-40640762)
chr7 (362-474)||(25137860-25137973)
chr7 (362-423)||(33686926-33686987)
chr7 (388-425)||(29006374-29006411)
chr7 (388-425)||(29007183-29007220)
chr7 (387-424)||(41224828-41224865)
chr7 (361-424)||(33687735-33687798)
chr7 (359-432)||(42607078-42607151)
chr7 (389-422)||(35613231-35613264)
chr7 (388-425)||(44896073-44896110)
chr7 (388-424)||(29314608-29314644)
[»] scaffold0095 (1 HSPs)
scaffold0095 (364-501)||(42841-42977)
[»] chr4 (22 HSPs)
chr4 (364-501)||(52532125-52532262)
chr4 (361-501)||(52532339-52532479)
chr4 (362-474)||(19860330-19860442)
chr4 (361-499)||(5259239-5259377)
chr4 (361-474)||(19860808-19860921)
chr4 (361-474)||(20174969-20175082)
chr4 (361-474)||(5235373-5235486)
chr4 (361-474)||(6934438-6934551)
chr4 (361-474)||(6933820-6933933)
chr4 (361-474)||(5235822-5235935)
chr4 (359-474)||(30213851-30213966)
chr4 (388-428)||(46764279-46764319)
chr4 (388-425)||(11680303-11680340)
chr4 (388-425)||(11688582-11688619)
chr4 (388-425)||(25655623-25655660)
chr4 (388-428)||(31910581-31910621)
chr4 (383-425)||(12590187-12590229)
chr4 (414-474)||(20175361-20175421)
chr4 (368-501)||(39412771-39412905)
chr4 (362-424)||(3167463-3167525)
chr4 (388-432)||(3847913-3847957)
chr4 (361-424)||(39413607-39413670)
[»] chr2 (18 HSPs)
chr2 (362-474)||(3705337-3705449)
chr2 (362-474)||(16681566-16681678)
chr2 (360-474)||(3705760-3705876)
chr2 (362-474)||(30899390-30899502)
chr2 (361-474)||(15561976-15562089)
chr2 (361-474)||(16903833-16903946)
chr2 (361-474)||(16992327-16992441)
chr2 (362-474)||(6609979-6610091)
chr2 (362-474)||(7994509-7994621)
chr2 (361-474)||(15561540-15561653)
chr2 (389-474)||(7994082-7994167)
chr2 (361-456)||(37996537-37996632)
chr2 (389-474)||(16903425-16903509)
chr2 (362-474)||(30899837-30899949)
chr2 (363-474)||(6609552-6609663)
chr2 (388-445)||(16682231-16682288)
chr2 (361-425)||(34617652-34617716)
chr2 (388-424)||(40992249-40992285)
[»] scaffold0508 (2 HSPs)
scaffold0508 (359-474)||(4130-4245)
scaffold0508 (362-474)||(4560-4672)
[»] scaffold0022 (2 HSPs)
scaffold0022 (361-474)||(61573-61686)
scaffold0022 (408-474)||(62023-62089)
[»] scaffold0006 (1 HSPs)
scaffold0006 (389-474)||(202219-202304)
[»] scaffold0136 (1 HSPs)
scaffold0136 (359-433)||(22203-22278)
[»] scaffold0155 (1 HSPs)
scaffold0155 (388-424)||(17366-17402)


Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 8 - 239
Target Start/End: Complemental strand, 48589887 - 48589655
Alignment:
Q  8 gtattctattattgctatttggtcccccacaacccctaaacattggaatttttagcaccataaaaggcgaattattaccccaatattgaatctaaaaaca 107  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48589887 gtattctattattgctatttggtccccaacaacccctaaacattgggatttttagcaccataaaaggcgaattattaccccaatattgaatctaaaaaca 48589788  T
Q  108 aagtatcactattgagacaaaattcgcttattttagtatca-aaaataactatttttagggtaataaacatgagttggaatcaaagttgcgataaatgta 206  Q
    ||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48589787 aagtatcactattgagacaaaattcacatattttagtatcaaaaaataactatttttagggtaataaacatgagttggaatcaaagttgcgataaatgta 48589688  T
Q  207 aaaacagattaccagaaagttcaattacgaaaa 239  Q
    |||||||||||||||||||||||||||||||||    
T  48589687 aaaacagattaccagaaagttcaattacgaaaa 48589655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 8 - 239
Target Start/End: Complemental strand, 48594971 - 48594739
Alignment:
Q  8 gtattctattattgctatttggtcccccacaacccctaaacattggaatttttagcaccataaaaggcgaattattaccccaatattgaatctaaaaaca 107  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48594971 gtattctattattgctatttggtccccaacaacccctaaacattgggatttttagcaccataaaaggcgaattattaccccaatattgaatctaaaaaca 48594872  T
Q  108 aagtatcactattgagacaaaattcgcttattttagtatca-aaaataactatttttagggtaataaacatgagttggaatcaaagttgcgataaatgta 206  Q
    ||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48594871 aagtatcactattgagacaaaattcacatattttagtatcaaaaaataactatttttagggtaataaacatgagttggaatcaaagttgcgataaatgta 48594772  T
Q  207 aaaacagattaccagaaagttcaattacgaaaa 239  Q
    |||||||||||||||||||||||||||||||||    
T  48594771 aaaacagattaccagaaagttcaattacgaaaa 48594739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 8 - 239
Target Start/End: Complemental strand, 48599582 - 48599350
Alignment:
Q  8 gtattctattattgctatttggtcccccacaacccctaaacattggaatttttagcaccataaaaggcgaattattaccccaatattgaatctaaaaaca 107  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48599582 gtattctattattgctatttggtccccaacaacccctaaacattgggatttttagcaccataaaaggcgaattattaccccaatattgaatctaaaaaca 48599483  T
Q  108 aagtatcactattgagacaaaattcgcttattttagtatca-aaaataactatttttagggtaataaacatgagttggaatcaaagttgcgataaatgta 206  Q
    ||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48599482 aagtatcactattgagacaaaattcacatattttagtatcaaaaaataactatttttagggtaataaacatgagttggaatcaaagttgcgataaatgta 48599383  T
Q  207 aaaacagattaccagaaagttcaattacgaaaa 239  Q
    |||||||||||||||||||||||||||||||||    
T  48599382 aaaacagattaccagaaagttcaattacgaaaa 48599350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 244 - 501
Target Start/End: Complemental strand, 48594388 - 48594134
Alignment:
Q  244 aattatatgataatattaatttgtattgcaaataatctaagtaaaataacctcaannnnnnnnnnnnnaagaaatcaaaatggtatatattgaatcaact 343  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||             ||||||||||||||||||||||||||||||||    
T  48594388 aattatatgataatattaatttatattgcaaataatctaagtaaaaaaacctcaattttttttgt---aagaaatcaaaatggtatatattgaatcaact 48594292  T
Q  344 gactatccccctggcataggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacaca 443  Q
    ||||||||||||||||||||||||||||||||  ||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  48594291 gactatccccctggcataggtgaggtttagcattggaaagctacttttttcccatcatgggaaagttagtttttgaccattagatcaaaccaagaacaca 48594192  T
Q  444 tccttatcatacttcatcatcactagattttcttcttttgtcttcaacctcacaacca 501  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  48594191 tccttatcatactccctcatcactagattttcttcttttgtcttcaacctcacaacca 48594134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 244 - 501
Target Start/End: Complemental strand, 48598999 - 48598745
Alignment:
Q  244 aattatatgataatattaatttgtattgcaaataatctaagtaaaataacctcaannnnnnnnnnnnnaagaaatcaaaatggtatatattgaatcaact 343  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||             ||||||||||||||||||||||||||||||||    
T  48598999 aattatatgataatattaatttatattgcaaataatctaagtaaaaaaacctcaattttttttgt---aagaaatcaaaatggtatatattgaatcaact 48598903  T
Q  344 gactatccccctggcataggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacaca 443  Q
    ||||||||||||||||||||||||||||||||  ||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  48598902 gactatccccctggcataggtgaggtttagcattggaaagctacttttttcccatcatgggaaagttagtttttgaccattagatcaaaccaagaacaca 48598803  T
Q  444 tccttatcatacttcatcatcactagattttcttcttttgtcttcaacctcacaacca 501  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  48598802 tccttatcatactccctcatcactagattttcttcttttgtcttcaacctcacaacca 48598745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 244 - 501
Target Start/End: Complemental strand, 48589305 - 48589047
Alignment:
Q  244 aattatatgataatattaatttgtattgcaaataatctaagtaaaataa-cctcaannnnnnnnnnnnnaagaaatcaaaatggtatatattgaatcaac 342  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| || ||||||             || ||||||||||||||||||||||||||||    
T  48589305 aattatatgataatattagtttgtattgcaaataatctaagtaaaagaaacctcaatttttaaaaaa--aataaatcaaaatggtatatattgaatcaac 48589208  T
Q  343 tgactatccccctggcataggtgaggtttagcaagggaaagctaattttttc--ccaccatgggaaagttagtttttgaccattaaatcaaaccaagaac 440  Q
    ||||||||||||||||||| ||||||||||||| |||||| ||| ||||||   | ||||||||||| |||||||| ||| |||| |||||| |||||||    
T  48589207 tgactatccccctggcatatgtgaggtttagcatgggaaaactactttttttttctaccatgggaaaattagttttcgacgattagatcaaatcaagaac 48589108  T
Q  441 acatccttatcatacttcatcatcactagattttcttcttttgtcttcaacctcacaacca 501  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  48589107 acatccttatcatacttcataatcactagattttcttcttttgtcttcaacctcacaacca 48589047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 364 - 501
Target Start/End: Complemental strand, 48153205 - 48153068
Alignment:
Q  364 tgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatcat 463  Q
    |||||||||||| |||||||||| ||||||||||  |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| | ||||    
T  48153205 tgaggtttagcatgggaaagctacttttttcccaatatgggaaagttagtttttgatcattagatcaaaccaagaacacatccttatcatactccttcat 48153106  T
Q  464 cactagattttcttcttttgtcttcaacctcacaacca 501  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  48153105 cactagattttcttcttttgtcttcaatctcacaacca 48153068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 362 - 501
Target Start/End: Complemental strand, 50164757 - 50164618
Alignment:
Q  362 ggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatc 461  Q
    |||||||||||| | |||||| ||| |||||| ||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||| | ||    
T  50164757 ggtgaggtttagtatgggaaaactactttttttccaccataggaaagttagtttttgaccattagatcaaatcaagaacacatccttatcatactccttc 50164658  T
Q  462 atcactagattttcttcttttgtcttcaacctcacaacca 501  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  50164657 atcactagattttcttcttttgtcttcaacctcacaacca 50164618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 362 - 482
Target Start/End: Complemental strand, 28371751 - 28371631
Alignment:
Q  362 ggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatc 461  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| | ||    
T  28371751 ggtgaggtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaaaaacacatccttatcatactccctc 28371652  T
Q  462 atcactagattttcttctttt 482  Q
    |||||||||||||||||||||    
T  28371651 atcactagattttcttctttt 28371631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 361 - 501
Target Start/End: Original strand, 50164236 - 50164376
Alignment:
Q  361 aggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 460  Q
    ||||||||||||||| |||||| ||| ||||||||||| |||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||| | |    
T  50164236 aggtgaggtttagcatgggaaaactacttttttcccactatgggaaagttagtttatgaccattagatcaaaccaagaatacatccttatcatactccct 50164335  T
Q  461 catcactagattttcttcttttgtcttcaacctcacaacca 501  Q
    ||| ||||||||||||||||||||||||||||||| |||||    
T  50164336 cattactagattttcttcttttgtcttcaacctcataacca 50164376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 361 - 474
Target Start/End: Original strand, 2820957 - 2821070
Alignment:
Q  361 aggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 460  Q
    |||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |    
T  2820957 aggtgaggtttaacatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatccttatcatactccct 2821056  T
Q  461 catcactagatttt 474  Q
    ||||||||||||||    
T  2821057 catcactagatttt 2821070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 362 - 474
Target Start/End: Complemental strand, 12800518 - 12800406
Alignment:
Q  362 ggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatc 461  Q
    |||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||    
T  12800518 ggtgaggtttagcatgggaaaactacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatccttatcatactccctc 12800419  T
Q  462 atcactagatttt 474  Q
    |||||||||||||    
T  12800418 atcactagatttt 12800406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 362 - 474
Target Start/End: Original strand, 12799989 - 12800101
Alignment:
Q  362 ggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatc 461  Q
    |||||||||||| | |||||||||| |||||| | ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||    
T  12799989 ggtgaggtttagtatgggaaagctactttttttctaccatgggaaagttagtttttgaccattagatcaaaccaaaaacacatccttatcatacttcctc 12800088  T
Q  462 atcactagatttt 474  Q
    |||||||||||||    
T  12800089 atcactagatttt 12800101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 362 - 474
Target Start/End: Complemental strand, 2821537 - 2821425
Alignment:
Q  362 ggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatc 461  Q
    |||||||||||| | | |||| ||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| | ||    
T  2821537 ggtgaggtttagtatgagaaaactacttttttcccaccatgggaaagttaatttttgaccattagatcaaaccaagaacacatccttatcatactccctc 2821438  T
Q  462 atcactagatttt 474  Q
    |||||||||||||    
T  2821437 atcactagatttt 2821425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 361 - 474
Target Start/End: Complemental strand, 33631139 - 33631026
Alignment:
Q  361 aggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 460  Q
    ||||||| ||||||| |||||| ||| |||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||| |||||| | |    
T  33631139 aggtgagatttagcatgggaaaactacttttttcccaccatgggaaaattagtttttgaccattagatcaaacgaagaacacatccttaccatactccct 33631040  T
Q  461 catcactagatttt 474  Q
    ||||||||||||||    
T  33631039 catcactagatttt 33631026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 362 - 474
Target Start/End: Complemental strand, 43756395 - 43756283
Alignment:
Q  362 ggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 460  Q
    ||||| |||||||| ||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| | |    
T  43756395 ggtgaagtttagcatgggaaagactaattttttcc-accatgggaaagttagtttttaaccattaaatcaaaccaagaacacatccttaccatactccct 43756297  T
Q  461 catcactagatttt 474  Q
    ||||||||||||||    
T  43756296 catcactagatttt 43756283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 359 - 474
Target Start/End: Complemental strand, 38469336 - 38469221
Alignment:
Q  359 ataggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatactt 457  Q
    |||||||| |||||||| ||||||| |||||||||||| ||||||||||||||||||||| ||||||| |||||| |||||||||||||||| ||||||     
T  38469336 ataggtgaagtttagcatgggaaaggctaattttttcc-accatgggaaagttagtttttaaccattagatcaaatcaagaacacatccttaccatactc 38469238  T
Q  458 catcatcactagatttt 474  Q
    |||||||||||||||||    
T  38469237 catcatcactagatttt 38469221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 361 - 479
Target Start/End: Original strand, 28371198 - 28371316
Alignment:
Q  361 aggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 460  Q
    ||||||||||||| | ||||||| || |||||||| ||||||  ||||||||||||||||||||| ||||||||||||||||||| ||||||||||   |    
T  28371198 aggtgaggtttagtatgggaaagttacttttttcctaccatgaaaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatactctct 28371297  T
Q  461 catcactagattttcttct 479  Q
    |||||||||||||||||||    
T  28371298 catcactagattttcttct 28371316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 361 - 474
Target Start/End: Complemental strand, 38328935 - 38328822
Alignment:
Q  361 aggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttca 459  Q
    |||||| |||||||| ||||||| ||||||||| |||| ||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||| |     
T  38328935 aggtgaagtttagcatgggaaagactaattttt-cccatcatgggaaagttagtttttaatcattagatcaaaccaagaacacatccttatcatactccc 38328837  T
Q  460 tcatcactagatttt 474  Q
    |||||||||||||||    
T  38328836 tcatcactagatttt 38328822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 362 - 474
Target Start/End: Original strand, 43755849 - 43755961
Alignment:
Q  362 ggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 460  Q
    ||||| |||||||| ||||||| |||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||| | |    
T  43755849 ggtgaagtttagcatgggaaaggctaatttt-tcccaccatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccct 43755947  T
Q  461 catcactagatttt 474  Q
    ||||| ||||||||    
T  43755948 catcattagatttt 43755961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 360 - 474
Target Start/End: Original strand, 38468904 - 38469018
Alignment:
Q  360 taggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttc 458  Q
    ||||||| |||||||| ||||||| |||||||| ||||||||||||||||||||||||| ||||||| || ||| |||||||||||||||| |||||| |    
T  38468904 taggtgaagtttagcatgggaaaggctaatttt-tcccaccatgggaaagttagtttttaaccattatattaaatcaagaacacatccttaccatactcc 38469002  T
Q  459 atcatcactagatttt 474  Q
     |||||||||||||||    
T  38469003 ctcatcactagatttt 38469018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 360 - 425
Target Start/End: Complemental strand, 17151929 - 17151864
Alignment:
Q  360 taggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccatta 425  Q
    |||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||    
T  17151929 taggtgaggtttagcatgggaaagctactttttttccaccatgggaaagttagtttttgaccatta 17151864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 360 - 428
Target Start/End: Original strand, 33630475 - 33630543
Alignment:
Q  360 taggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaat 428  Q
    |||||||||||||||| |||||||||| || ||| ||||||||||||||||||||||||||||||||||    
T  33630475 taggtgaggtttagcatgggaaagctacttattttccaccatgggaaagttagtttttgaccattaaat 33630543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 390 - 474
Target Start/End: Original strand, 38328415 - 38328499
Alignment:
Q  390 ttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatcatcactagatttt 474  Q
    |||||| | ||||| ||||||||||||| ||||||| ||||||||||||||| ||||||| |||||| | |||||||||||||||    
T  38328415 ttttcctatcatggaaaagttagtttttaaccattagatcaaaccaagaacaaatccttaccatactccctcatcactagatttt 38328499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 361 - 422
Target Start/End: Original strand, 17151001 - 17151062
Alignment:
Q  361 aggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgacca 422  Q
    ||||||||||||||| |||||||     ||||||||||||||||||||||| ||||||||||    
T  17151001 aggtgaggtttagcatgggaaaggctggtttttcccaccatgggaaagttattttttgacca 17151062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 424
Target Start/End: Original strand, 32537672 - 32537707
Alignment:
Q  389 tttttcccaccatgggaaagttagtttttgaccatt 424  Q
    ||||||||||||||||||||||||||||| ||||||    
T  32537672 tttttcccaccatgggaaagttagtttttaaccatt 32537707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 424
Target Start/End: Complemental strand, 32538550 - 32538488
Alignment:
Q  362 ggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccatt 424  Q
    ||||| |||||||| ||||||| ||||||||| |||||||||| ||||||||||||| ||||||    
T  32538550 ggtgaagtttagcatgggaaaggctaattttt-cccaccatggaaaagttagtttttaaccatt 32538488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 417
Target Start/End: Complemental strand, 45065407 - 45065378
Alignment:
Q  388 ttttttcccaccatgggaaagttagttttt 417  Q
    ||||||||||||||||||||||||||||||    
T  45065407 ttttttcccaccatgggaaagttagttttt 45065378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 115; Significance: 3e-58; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 359 - 501
Target Start/End: Original strand, 14197656 - 14197798
Alignment:
Q  359 ataggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttc 458  Q
    ||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |    
T  14197656 ataggtgaggtttagcatgggaaagttacttttttcccaccatgggaaagttagtttttgaccattagatcaaagcaagaacacatccttatcatactcc 14197755  T
Q  459 atcatcactagattttcttcttttgtcttcaacctcacaacca 501  Q
     ||||||||||||||||||||||||||||||||||||||||||    
T  14197756 ctcatcactagattttcttcttttgtcttcaacctcacaacca 14197798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 364 - 501
Target Start/End: Original strand, 39439760 - 39439897
Alignment:
Q  364 tgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatcat 463  Q
    |||||||||| | || ||||||| |||||||||| ||| | |||||||||||||||| |||| |||||||||||||||||||||||||||||| | ||||    
T  39439760 tgaggtttagtatggaaaagctacttttttcccatcatagaaaagttagtttttgactattagatcaaaccaagaacacatccttatcatactccctcat 39439859  T
Q  464 cactagattttcttcttttgtcttcaacctcacaacca 501  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  39439860 cactagattttcttcttttgtctccaacctcacaacca 39439897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 364 - 501
Target Start/End: Complemental strand, 39440644 - 39440508
Alignment:
Q  364 tgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatcat 463  Q
    |||||||||||| | |||| ||| |||||||| |||||   |||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||    
T  39440644 tgaggtttagcatgagaaaactacttttttcc-accataaaaaagttagtttttgaccattaaatcaaaccaagaacacatccttataatactccctcat 39440546  T
Q  464 cactagattttcttcttttgtcttcaacctcacaacca 501  Q
    ||||||||||||||||||||||||||||||||||||||    
T  39440545 cactagattttcttcttttgtcttcaacctcacaacca 39440508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 362 - 474
Target Start/End: Original strand, 37657847 - 37657959
Alignment:
Q  362 ggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatc 461  Q
    |||||||||||||| |||||||||| |||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| | ||    
T  37657847 ggtgaggtttagcatgggaaagctactttttttctaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatactccctc 37657946  T
Q  462 atcactagatttt 474  Q
    |||||||||||||    
T  37657947 atcactagatttt 37657959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 362 - 474
Target Start/End: Original strand, 30846016 - 30846128
Alignment:
Q  362 ggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 460  Q
    ||||| |||||||| ||||||| |||||||| ||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||| |||||| | |    
T  30846016 ggtgaagtttagcatgggaaagactaatttt-tcccaccataggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccct 30846114  T
Q  461 catcactagatttt 474  Q
    ||||||||||||||    
T  30846115 catcactagatttt 30846128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 362 - 474
Target Start/End: Original strand, 41714603 - 41714715
Alignment:
Q  362 ggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatc 461  Q
    |||||||||||||| |||||||||| ||||||  || ||||  ||||||||||||||| ||||| |||||||||||||||||||||||||||| | | ||    
T  41714603 ggtgaggtttagcatgggaaagctatttttttttcatcatgaaaaagttagtttttgatcattagatcaaaccaagaacacatccttatcataatccctc 41714702  T
Q  462 atcactagatttt 474  Q
    |||||||||||||    
T  41714703 atcactagatttt 41714715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 361 - 474
Target Start/End: Complemental strand, 30846545 - 30846432
Alignment:
Q  361 aggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttca 459  Q
    |||||| |||||||| ||||||| |||||||||||| ||||||||||| ||||||||| ||||||| ||||||||||||||| ||||||| |||||| |     
T  30846545 aggtgaagtttagcatgggaaaggctaattttttcc-accatgggaaaattagtttttaaccattagatcaaaccaagaacatatccttaccatactccc 30846447  T
Q  460 tcatcactagatttt 474  Q
    |||||||||||||||    
T  30846446 tcatcactagatttt 30846432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 405 - 474
Target Start/End: Complemental strand, 41715272 - 41715203
Alignment:
Q  405 aaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatcatcactagatttt 474  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||    
T  41715272 aaagttagtttttgaccattagatcaaaccaagaacatatccttatcatactccatcatcactagatttt 41715203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 362 - 421
Target Start/End: Complemental strand, 31408223 - 31408164
Alignment:
Q  362 ggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgacc 421  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  31408223 ggtgaggtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgacc 31408164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 405 - 474
Target Start/End: Complemental strand, 37658549 - 37658480
Alignment:
Q  405 aaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatcatcactagatttt 474  Q
    ||||||||||||| ||||||| ||||||| |||||||| |||||| |||||| | |||| ||||||||||    
T  37658549 aaagttagttttttaccattagatcaaacgaagaacacgtccttaccatactccttcattactagatttt 37658480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 384 - 428
Target Start/End: Original strand, 42573602 - 42573646
Alignment:
Q  384 ctaattttttcccaccatgggaaagttagtttttgaccattaaat 428  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||    
T  42573602 ctaattttttcccaccatgagaaaattagtttttgaccattaaat 42573646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 425
Target Start/End: Complemental strand, 35759260 - 35759223
Alignment:
Q  388 ttttttcccaccatgggaaagttagtttttgaccatta 425  Q
    ||||| |||||||||||||||||||||||| |||||||    
T  35759260 tttttccccaccatgggaaagttagtttttaaccatta 35759223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 425
Target Start/End: Original strand, 41348171 - 41348208
Alignment:
Q  388 ttttttcccaccatgggaaagttagtttttgaccatta 425  Q
    ||||| |||||||||||||||||||||||| |||||||    
T  41348171 tttttccccaccatgggaaagttagtttttaaccatta 41348208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 424
Target Start/End: Original strand, 41092199 - 41092235
Alignment:
Q  388 ttttttcccaccatgggaaagttagtttttgaccatt 424  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  41092199 ttttttcccaccatggaaaagttagtttttaaccatt 41092235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 110; Significance: 3e-55; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 368 - 501
Target Start/End: Complemental strand, 38000334 - 38000201
Alignment:
Q  368 gtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatcatcact 467  Q
    |||||||| |||||||||  |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  38000334 gtttagcatgggaaagctgcttttttcccaccatggaaaagttagtttttgaccattagatcaaaccaagaacacatccttatcatacttcctcatcact 38000235  T
Q  468 agattttcttcttttgtcttcaacctcacaacca 501  Q
    ||||||||||||||||||||||||||||||||||    
T  38000234 agattttcttcttttgtcttcaacctcacaacca 38000201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 363 - 498
Target Start/End: Original strand, 42257215 - 42257350
Alignment:
Q  363 gtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatca 462  Q
    ||||||||||||| |||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||    
T  42257215 gtgaggtttagcatgggaaaactacttttttcccaccatggaaaagttagtttttgaccattaaatcaaaccaagaacacatctttatcatactccctca 42257314  T
Q  463 tcactagattttcttcttttgtcttcaacctcacaa 498  Q
    ||||||||||||||||||||||||||||||||||||    
T  42257315 tcactagattttcttcttttgtcttcaacctcacaa 42257350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 360 - 501
Target Start/End: Complemental strand, 14788650 - 14788509
Alignment:
Q  360 taggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttca 459  Q
    ||||||||||||| || |||||||||| |||||||| | ||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||     
T  14788650 taggtgaggtttaacatgggaaagctacttttttcctatcatgggaaagttagtttttgaccattagatcaaaccaagaagacattcttatcatacttcc 14788551  T
Q  460 tcatcactagattttcttcttttgtcttcaacctcacaacca 501  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  14788550 tcatcgctagattttcttcttttgtcttcaacctcacaacca 14788509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 362 - 474
Target Start/End: Complemental strand, 930481 - 930369
Alignment:
Q  362 ggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatc 461  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||    
T  930481 ggtgaggtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatccttatcatactccctc 930382  T
Q  462 atcactagatttt 474  Q
    |||||||||||||    
T  930381 atcactagatttt 930369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 361 - 474
Target Start/End: Complemental strand, 11442204 - 11442091
Alignment:
Q  361 aggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 460  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| | |    
T  11442204 aggtgaggtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaacaaagaacacatccttatcatactccct 11442105  T
Q  461 catcactagatttt 474  Q
    ||||||||||||||    
T  11442104 catcactagatttt 11442091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 362 - 474
Target Start/End: Complemental strand, 21166204 - 21166092
Alignment:
Q  362 ggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatc 461  Q
    |||||||||||||| ||||||| || |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| | ||    
T  21166204 ggtgaggtttagcatgggaaagttacttttttcccaccatgggaaaattagtttttgaccattagatcaaaccaagaacacatccttatcatactccctc 21166105  T
Q  462 atcactagatttt 474  Q
    |||||||||||||    
T  21166104 atcactagatttt 21166092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 362 - 474
Target Start/End: Original strand, 32473761 - 32473873
Alignment:
Q  362 ggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatc 461  Q
    |||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| | ||    
T  32473761 ggtgaggtttagcatgggaaagctacttttttcccactatgggaaagttagtttttgaccattagatcaaaccaagaacacatccttattatactccctc 32473860  T
Q  462 atcactagatttt 474  Q
    |||||||||||||    
T  32473861 atcactagatttt 32473873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 360 - 501
Target Start/End: Original strand, 14788272 - 14788413
Alignment:
Q  360 taggtgaggtttagcaagggaaagctaatttttt-cccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttc 458  Q
    |||||||||||||||| |||||| ||| |||||| |||||||||  ||||||||||||||||||||| | ||||||||||||||||| |||||||||| |    
T  14788272 taggtgaggtttagcatgggaaatctactttttttcccaccatga-aaagttagtttttgaccattagaacaaaccaagaacacatctttatcatactcc 14788370  T
Q  459 atcatcactagattttcttcttttgtcttcaacctcacaacca 501  Q
     ||||||||| |||||||||||||||||||||||||| |||||    
T  14788371 ctcatcactaaattttcttcttttgtcttcaacctcagaacca 14788413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 361 - 474
Target Start/End: Original strand, 929910 - 930023
Alignment:
Q  361 aggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 460  Q
    ||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |      
T  929910 aggtgaggtttagcatgggaaatctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaataacacatccttatcatactcccc 930009  T
Q  461 catcactagatttt 474  Q
    ||||||||||||||    
T  930010 catcactagatttt 930023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 361 - 474
Target Start/End: Complemental strand, 32474511 - 32474398
Alignment:
Q  361 aggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 460  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||| |||||| | |    
T  32474511 aggtgaggtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaacgaagaacgcatccttaccatactccct 32474412  T
Q  461 catcactagatttt 474  Q
    ||||||||||||||    
T  32474411 catcactagatttt 32474398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 360 - 474
Target Start/End: Original strand, 43521075 - 43521186
Alignment:
Q  360 taggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttca 459  Q
    |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    |||||||||||||||||| |     
T  43521075 taggtgaggtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaacc---tacacatccttatcatactccc 43521171  T
Q  460 tcatcactagatttt 474  Q
    |||||||||||||||    
T  43521172 tcatcactagatttt 43521186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 359 - 474
Target Start/End: Complemental strand, 26006829 - 26006714
Alignment:
Q  359 ataggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatactt 457  Q
    |||||||| |||||||| ||||||| ||||||||| |||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||     
T  26006829 ataggtgaagtttagcatgggaaaggctaattttt-cccatcatgagaaagttagtttttgaccattagatcaaaccaagaacacatccttatcatactc 26006731  T
Q  458 catcatcactagatttt 474  Q
    | |||||||||||||||    
T  26006730 cctcatcactagatttt 26006714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 363 - 474
Target Start/End: Original strand, 50766631 - 50766740
Alignment:
Q  363 gtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatca 462  Q
    ||||||||||||| |||||||||| |||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||| |||||||||| || |||    
T  50766631 gtgaggtttagcatgggaaagctacttttttcccaccatgg-aaagttaatttttgaccattagatcaaaccaagaacacattcttatcatac-tcctca 50766728  T
Q  463 tcactagatttt 474  Q
    ||||||||||||    
T  50766729 tcactagatttt 50766740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 361 - 474
Target Start/End: Original strand, 5113197 - 5113310
Alignment:
Q  361 aggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttca 459  Q
    |||||| |||||||| ||||||| |||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||| |     
T  5113197 aggtgaagtttagcatgggaaaggctaatttt-tcccaccatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccc 5113295  T
Q  460 tcatcactagatttt 474  Q
    |||||||||||||||    
T  5113296 tcatcactagatttt 5113310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 377 - 474
Target Start/End: Original strand, 11441664 - 11441761
Alignment:
Q  377 gggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatcatcactagatttt 474  Q
    ||||||| || ||||||  |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||    
T  11441664 gggaaagttacttttttttcaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatccttatcatactccctcatcactagatttt 11441761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 362 - 474
Target Start/End: Complemental strand, 20586632 - 20586520
Alignment:
Q  362 ggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 460  Q
    ||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||| | |    
T  20586632 ggtgaagtttagcatgggaaaggctaattttt-cccaccatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccct 20586534  T
Q  461 catcactagatttt 474  Q
    ||||||||||||||    
T  20586533 catcactagatttt 20586520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 362 - 474
Target Start/End: Complemental strand, 24394782 - 24394670
Alignment:
Q  362 ggtgaggtttagcaagggaaa-gctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 460  Q
    ||||| |||||||| |||||| |||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||| | |    
T  24394782 ggtgaagtttagcatgggaaatgctaattttt-cccaccatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccct 24394684  T
Q  461 catcactagatttt 474  Q
    ||||||||||||||    
T  24394683 catcactagatttt 24394670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 359 - 474
Target Start/End: Complemental strand, 5113759 - 5113644
Alignment:
Q  359 ataggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttc 458  Q
    |||||||| |||||||| ||||||||  | | ||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||| |||||| |    
T  5113759 ataggtgaagtttagcatgggaaagcctaatctttcccaccatgggaaagttagtttttaaccattagatcaaaccaagaatacatccttaccatactcc 5113660  T
Q  459 atcatcactagatttt 474  Q
     |||||||||||||||    
T  5113659 ctcatcactagatttt 5113644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 360 - 474
Target Start/End: Complemental strand, 36992223 - 36992109
Alignment:
Q  360 taggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttc 458  Q
    ||||||| |||||| | ||||||| ||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||| |    
T  36992223 taggtgaagtttagtatgggaaaggctaattttt-cccaccatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactcc 36992125  T
Q  459 atcatcactagatttt 474  Q
     |||||||||||||||    
T  36992124 ctcatcactagatttt 36992109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 360 - 474
Target Start/End: Complemental strand, 37017663 - 37017549
Alignment:
Q  360 taggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttc 458  Q
    ||||||| |||||| | ||||||| ||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||| |    
T  37017663 taggtgaagtttagtatgggaaaggctaattttt-cccaccatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactcc 37017565  T
Q  459 atcatcactagatttt 474  Q
     |||||||||||||||    
T  37017564 ctcatcactagatttt 37017549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 388 - 490
Target Start/End: Complemental strand, 42258083 - 42257982
Alignment:
Q  388 ttttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatcatcactagattttcttcttttgtctt 487  Q
    |||||||||| ||| ||||||||||||||||||||||| |||||| ||| ||||||| ||||||||||| | ||||||||||||||||||||||||||||    
T  42258083 ttttttcccatcattggaaagttagtttttgaccattagatcaaatcaataacacat-cttatcatactccctcatcactagattttcttcttttgtctt 42257985  T
Q  488 caa 490  Q
    |||    
T  42257984 caa 42257982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 362 - 474
Target Start/End: Original strand, 20586072 - 20586184
Alignment:
Q  362 ggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 460  Q
    ||||| |||||||| ||||||| |||||||| ||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||| |||||| | |    
T  20586072 ggtgaagtttagcatgggaaaggctaatttt-tcccaccatgggaaagttagtttttaaccattagatcaaatcaagaacacatccttaccatactccct 20586170  T
Q  461 catcactagatttt 474  Q
    ||||||||||||||    
T  20586171 catcactagatttt 20586184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 389 - 474
Target Start/End: Complemental strand, 45000848 - 45000763
Alignment:
Q  389 tttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatcatcactagatttt 474  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||| | |||||||||||||||    
T  45000848 tttttcccaccatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccctcatcactagatttt 45000763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 362 - 474
Target Start/End: Original strand, 24394247 - 24394359
Alignment:
Q  362 ggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 460  Q
    ||||| |||||| | ||||||| |||||||||||| ||||| ||||||||||||||| ||||||| ||||||||||||||||||||||| |||||| | |    
T  24394247 ggtgaagtttagtatgggaaagactaattttttcc-accataggaaagttagtttttaaccattagatcaaaccaagaacacatccttagcatactccct 24394345  T
Q  461 catcactagatttt 474  Q
    ||||||||||||||    
T  24394346 catcactagatttt 24394359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 362 - 474
Target Start/End: Original strand, 26006146 - 26006258
Alignment:
Q  362 ggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 460  Q
    ||||| |||||||| ||||||| |||||||| ||||||||||||||||||||||||| ||||||| ||||||| || |||||||||||| |||||| | |    
T  26006146 ggtgaagtttagcatgggaaaggctaatttt-tcccaccatgggaaagttagtttttaaccattagatcaaactaataacacatccttaccatactcctt 26006244  T
Q  461 catcactagatttt 474  Q
    ||||||||||||||    
T  26006245 catcactagatttt 26006258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 363 - 474
Target Start/End: Original strand, 45000316 - 45000427
Alignment:
Q  363 gtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatc 461  Q
    |||| |||||||| ||||||| ||||||||| ||||| |||||||||||||||||| ||||||| |||||| |||||||||||||||| |||||| | ||    
T  45000316 gtgaagtttagcatgggaaaggctaattttt-cccactatgggaaagttagtttttaaccattagatcaaatcaagaacacatccttaccatactccctc 45000414  T
Q  462 atcactagatttt 474  Q
    |||||||||||||    
T  45000415 atcactagatttt 45000427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 361 - 474
Target Start/End: Complemental strand, 43104826 - 43104713
Alignment:
Q  361 aggtgaggtttagcaagggaaa-gctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttca 459  Q
    |||||| |||||||| |||||| |||||||||| ||||  |||||||||||||||||| ||||||| ||||||| ||||||||||| ||| |||||| |     
T  43104826 aggtgaagtttagcatgggaaatgctaattttt-cccataatgggaaagttagtttttaaccattagatcaaacgaagaacacatctttaccatactccc 43104728  T
Q  460 tcatcactagatttt 474  Q
    |||||| ||||||||    
T  43104727 tcatcattagatttt 43104713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 50836214 - 50836265
Alignment:
Q  360 taggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagtta 411  Q
    |||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  50836214 taggtgaggtttagcatgggaaagctatttttttcccaccatgggaaagtta 50836265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 50839639 - 50839588
Alignment:
Q  360 taggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagtta 411  Q
    |||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  50839639 taggtgaggtttagcatgggaaagctatttttttcccaccatgggaaagtta 50839588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 403
Target Start/End: Complemental strand, 24181987 - 24181950
Alignment:
Q  366 aggtttagcaagggaaagctaattttttcccaccatgg 403  Q
    |||||||||| |||||||||| ||||||||||||||||    
T  24181987 aggtttagcatgggaaagctacttttttcccaccatgg 24181950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 103; Significance: 5e-51; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 359 - 501
Target Start/End: Complemental strand, 42655791 - 42655649
Alignment:
Q  359 ataggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttc 458  Q
    |||||| | |||||||| |||||||||| || ||||||||||||| ||| ||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  42655791 ataggtcacgtttagcatgggaaagctacttctttcccaccatggaaaaattagtttttgaccattagatcaaaccaataacacatccttatcatacttc 42655692  T
Q  459 atcatcactagattttcttcttttgtcttcaacctcacaacca 501  Q
     ||||||||||||||||||||||||||||||||||||||||||    
T  42655691 ctcatcactagattttcttcttttgtcttcaacctcacaacca 42655649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 362 - 474
Target Start/End: Complemental strand, 5620917 - 5620805
Alignment:
Q  362 ggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatc 461  Q
    |||||||||||||| ||||||| || |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| | ||    
T  5620917 ggtgaggtttagcatgggaaagttacttttttcccaccatgggaaaattagtttttgaccattagatcaaaccaagaacacatccttatcatactccctc 5620818  T
Q  462 atcactagatttt 474  Q
    |||||||||||||    
T  5620817 atcactagatttt 5620805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 360 - 474
Target Start/End: Complemental strand, 12330712 - 12330598
Alignment:
Q  360 taggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttc 458  Q
    ||||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||| |    
T  12330712 taggtgaagtttagcatgggaaaggctaattttt-cccaccatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactcc 12330614  T
Q  459 atcatcactagatttt 474  Q
     |||||||||||||||    
T  12330613 ctcatcactagatttt 12330598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 361 - 474
Target Start/End: Original strand, 3595776 - 3595889
Alignment:
Q  361 aggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttca 459  Q
    |||||| |||||||| ||||||| |||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||| |     
T  3595776 aggtgaagtttagcatgggaaaggctaatttt-tcccaccatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccc 3595874  T
Q  460 tcatcactagatttt 474  Q
    |||||||||||||||    
T  3595875 tcatcactagatttt 3595889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 362 - 474
Target Start/End: Complemental strand, 8321435 - 8321323
Alignment:
Q  362 ggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 460  Q
    ||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||| | |    
T  8321435 ggtgaagtttagcatgggaaaggctaattttt-cccaccatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccct 8321337  T
Q  461 catcactagatttt 474  Q
    ||||||||||||||    
T  8321336 catcactagatttt 8321323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 361 - 474
Target Start/End: Original strand, 7858326 - 7858439
Alignment:
Q  361 aggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttca 459  Q
    |||||| |||||||| ||||||| |||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||| |     
T  7858326 aggtgaagtttagcatgggaaaggctaatttt-tcccaccatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccc 7858424  T
Q  460 tcatcactagatttt 474  Q
    |||||| ||||||||    
T  7858425 tcatcattagatttt 7858439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 362 - 474
Target Start/End: Original strand, 12330148 - 12330260
Alignment:
Q  362 ggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 460  Q
    ||||| |||||||| ||||||| |||||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||| |||||| | |    
T  12330148 ggtgaagtttagcatgggaaaggctaatttt-tcccaccatgggaaagttaatttttaaccattagatcaaaccaagaacacatccttaccatactccct 12330246  T
Q  461 catcactagatttt 474  Q
    ||||||||||||||    
T  12330247 catcactagatttt 12330260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 381 - 474
Target Start/End: Complemental strand, 16997058 - 16996965
Alignment:
Q  381 aagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatcatcactagatttt 474  Q
    |||||| |||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||| | |||||||||||||||    
T  16997058 aagctacttttttcctaccatgggaaagttagtttttgaccattagatcaaacgaagaacacatccttaccatactccctcatcactagatttt 16996965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 362 - 474
Target Start/End: Original strand, 8320875 - 8320987
Alignment:
Q  362 ggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 460  Q
    ||||| |||||||| ||||||| |||||||| ||||||||||||||||||||||||| ||||||| || ||||||| |||||||||||| |||||| | |    
T  8320875 ggtgaagtttagcatgggaaaggctaatttt-tcccaccatgggaaagttagtttttaaccattagattaaaccaataacacatccttaccatactccct 8320973  T
Q  461 catcactagatttt 474  Q
    ||||||||||||||    
T  8320974 catcactagatttt 8320987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 362 - 474
Target Start/End: Original strand, 24027187 - 24027299
Alignment:
Q  362 ggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 460  Q
    ||||| |||||||| ||||||| |||||||| ||||||||||| ||||||||||||| || |||| ||||||||||||||||||||||| |||||| | |    
T  24027187 ggtgaagtttagcatgggaaaggctaatttt-tcccaccatggaaaagttagtttttaactattagatcaaaccaagaacacatccttaccatactccct 24027285  T
Q  461 catcactagatttt 474  Q
    ||||||||||||||    
T  24027286 catcactagatttt 24027299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 389 - 474
Target Start/End: Complemental strand, 24027707 - 24027622
Alignment:
Q  389 tttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatcatcactagatttt 474  Q
    ||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||| | |||||||||||||||    
T  24027707 tttttcccatcatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccctcatcactagatttt 24027622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 362 - 474
Target Start/End: Original strand, 29759597 - 29759709
Alignment:
Q  362 ggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 460  Q
    ||||| |||||||| ||||||| |||||||||||| || |||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||| |      
T  29759597 ggtgaagtttagcatgggaaagactaattttttcc-actatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactcccc 29759695  T
Q  461 catcactagatttt 474  Q
    ||||||||||||||    
T  29759696 catcactagatttt 29759709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 363 - 474
Target Start/End: Complemental strand, 3596340 - 3596229
Alignment:
Q  363 gtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatc 461  Q
    |||| |||||||| ||||||| ||||||||| |||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||  ||||| | ||    
T  3596340 gtgaagtttagcatgggaaagactaattttt-cccaccatgggaaaattagtttttaaccattagatcaaaccaagaacacatccttactatactccctc 3596242  T
Q  462 atcactagatttt 474  Q
    |||||||||||||    
T  3596241 atcactagatttt 3596229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 360 - 474
Target Start/End: Complemental strand, 7858869 - 7858755
Alignment:
Q  360 taggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttca 459  Q
    ||||||| ||||| || ||||||| | | |||||   ||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||| |     
T  7858869 taggtgaagtttaacatgggaaagattaattttttttaccatgggaaagttagtttttaaccattaaatcaaaccaagaatacatccttaccatactccc 7858770  T
Q  460 tcatcactagatttt 474  Q
    |||||||||||||||    
T  7858769 tcatcactagatttt 7858755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 361 - 426
Target Start/End: Original strand, 31078455 - 31078520
Alignment:
Q  361 aggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaa 426  Q
    |||||| |||||||| ||||||| |||||||||||| ||||||||||||||||||||| ||||||||    
T  31078455 aggtgaagtttagcatgggaaagactaattttttcc-accatgggaaagttagtttttaaccattaa 31078520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 419
Target Start/End: Original strand, 36912245 - 36912302
Alignment:
Q  361 aggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttga 419  Q
    ||||| ||||||||| |||||||   |||||||||||||||||||||||| ||||||||    
T  36912245 aggtggggtttagcatgggaaaggctattttttcccaccatgggaaagtt-gtttttga 36912302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 7e-47; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 359 - 474
Target Start/End: Complemental strand, 28983343 - 28983228
Alignment:
Q  359 ataggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttc 458  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |    
T  28983343 ataggtgaggtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatccttatcatactcc 28983244  T
Q  459 atcatcactagatttt 474  Q
     |||||||||||||||    
T  28983243 ctcatcactagatttt 28983228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 360 - 474
Target Start/End: Complemental strand, 34717805 - 34717691
Alignment:
Q  360 taggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttca 459  Q
    |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |     
T  34717805 taggtgaggtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatccttatcatactccc 34717706  T
Q  460 tcatcactagatttt 474  Q
    |||||||||||||||    
T  34717705 tcatcactagatttt 34717691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 368 - 497
Target Start/End: Complemental strand, 28535506 - 28535376
Alignment:
Q  368 gtttagcaagggaaagctaattttttc-ccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatcatcac 466  Q
    |||||||| |||||||||| ||||||  ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||     
T  28535506 gtttagcatgggaaagctacttttttttccaccataggaaagttagtttttgaccattagatcaaaccaagaacacatccttatcatacttcctcatcat 28535407  T
Q  467 tagattttcttcttttgtcttcaacctcaca 497  Q
    || ||||||||||||||||||||||||||||    
T  28535406 tatattttcttcttttgtcttcaacctcaca 28535376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 362 - 474
Target Start/End: Complemental strand, 19062871 - 19062759
Alignment:
Q  362 ggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatc 461  Q
    |||||| ||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||| | ||    
T  19062871 ggtgagctttagcatgggaaagctacttttttcccaccatgagaaagttagtttttgaccattagatcaaaccaaaaacacatccttatcatactccctc 19062772  T
Q  462 atcactagatttt 474  Q
    |||||||||||||    
T  19062771 atcactagatttt 19062759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 361 - 474
Target Start/End: Original strand, 34717241 - 34717354
Alignment:
Q  361 aggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 460  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||| |||||| ||||||||| |||||||||||||   |    
T  34717241 aggtgaggtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgatcattagatcaaatcaagaacacgtccttatcatactctct 34717340  T
Q  461 catcactagatttt 474  Q
    ||||||||||||||    
T  34717341 catcactagatttt 34717354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 360 - 474
Target Start/End: Complemental strand, 7635685 - 7635571
Alignment:
Q  360 taggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttc 458  Q
    ||||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||| |    
T  7635685 taggtgaagtttagcatgggaaagactaattttt-cccaccatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactcc 7635587  T
Q  459 atcatcactagatttt 474  Q
     |||||||||||||||    
T  7635586 ctcatcactagatttt 7635571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 362 - 474
Target Start/End: Original strand, 28982782 - 28982893
Alignment:
Q  362 ggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatc 461  Q
    |||||||||||||| |||||| ||| |||||||  | ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| | ||    
T  28982782 ggtgaggtttagcatgggaaaactacttttttct-atcatgggaaagttagtttttgaccattcgatcaaaccaagaacacatccttatcatactccctc 28982880  T
Q  462 atcactagatttt 474  Q
    |||||||||||||    
T  28982881 atcactagatttt 28982893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 361 - 474
Target Start/End: Original strand, 7635123 - 7635236
Alignment:
Q  361 aggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttca 459  Q
    |||||| |||||||| ||||||| |||||||| ||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||| |||||| |     
T  7635123 aggtgaagtttagcatgggaaaggctaatttt-tcccaccatgggaaagttagtttttaaccattagatcaaactaagaacacatccttaccatactccc 7635221  T
Q  460 tcatcactagatttt 474  Q
    |||||||||||||||    
T  7635222 tcatcactagatttt 7635236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 362 - 474
Target Start/End: Complemental strand, 18290543 - 18290431
Alignment:
Q  362 ggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 460  Q
    ||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||| |||||| | |    
T  18290543 ggtgaagtttagcatgggaaaggctaattttt-cccaccatgggaaagttagtttttaaccattagatcaaaccaagaacaaatccttaccatactccct 18290445  T
Q  461 catcactagatttt 474  Q
    ||||||||||||||    
T  18290444 catcactagatttt 18290431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 361 - 474
Target Start/End: Original strand, 18290214 - 18290327
Alignment:
Q  361 aggtgaggtttagcaagggaaa-gctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttca 459  Q
    |||||| |||||||| |||||| ||||||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| ||||||| |||||| |     
T  18290214 aggtgaagtttagcatgggaaaagctaatttt-tcccaccatgggaaagttaatttttaaccattagatcaaaccaagaacaaatccttaccatactccc 18290312  T
Q  460 tcatcactagatttt 474  Q
    |||||||||||||||    
T  18290313 tcatcactagatttt 18290327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 361 - 430
Target Start/End: Complemental strand, 2925021 - 2924952
Alignment:
Q  361 aggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatca 430  Q
    ||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||| ||||    
T  2925021 aggtgaggtttagcatgggaaagctacttttttcccaccataggaaagttagtttttgaccattagatca 2924952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 361 - 474
Target Start/End: Original strand, 4348846 - 4348959
Alignment:
Q  361 aggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 460  Q
    |||||| |||||||| | ||||| | | ||||| |||||||  ||||||| |||||| ||||||| ||||||||||||||||||||||| |||||| | |    
T  4348846 aggtgaagtttagcatgagaaagattaattttttccaccataagaaagtttgtttttaaccattagatcaaaccaagaacacatccttaccatactccct 4348945  T
Q  461 catcactagatttt 474  Q
    ||||||||||||||    
T  4348946 catcactagatttt 4348959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 389 - 474
Target Start/End: Complemental strand, 12999498 - 12999413
Alignment:
Q  389 tttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatcatcactagatttt 474  Q
    |||||||||||||| | |||||||||||| ||||||| ||||||||||||||| ||||||| |||||| | ||| || ||||||||    
T  12999498 tttttcccaccatgagcaagttagtttttaaccattagatcaaaccaagaacatatccttaccatactccctcaccattagatttt 12999413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 388 - 425
Target Start/End: Complemental strand, 10608341 - 10608304
Alignment:
Q  388 ttttttcccaccatgggaaagttagtttttgaccatta 425  Q
    ||||||||||||||||||||||||||||||||||||||    
T  10608341 ttttttcccaccatgggaaagttagtttttgaccatta 10608304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 407
Target Start/End: Original strand, 14496445 - 14496489
Alignment:
Q  363 gtgaggtttagcaagggaaagctaattttttcccaccatgggaaa 407  Q
    ||||||||||||| |||||||||| ||||||| ||||||||||||    
T  14496445 gtgaggtttagcatgggaaagctacttttttctcaccatgggaaa 14496489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 501
Target Start/End: Complemental strand, 18605901 - 18605767
Alignment:
Q  368 gtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatcatcac 466  Q
    |||||||| ||||||| |||||||||||| |||||||||||||| |||||| ||||||  ||||||  |  ||||||  |||||||| || | | | ||     
T  18605901 gtttagcatgggaaaggctaattttttcc-accatgggaaagtttgtttttaaccattggatcaaatgataaacacactcttatcatgctcctttaacat 18605803  T
Q  467 taga-ttttcttcttttgtcttcaacctcacaacca 501  Q
    |||| |||||| | ||| ||||||||||||||||||    
T  18605802 tagatttttctccatttctcttcaacctcacaacca 18605767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 388 - 425
Target Start/End: Original strand, 930950 - 930988
Alignment:
Q  388 ttttttcccaccatgggaaa-gttagtttttgaccatta 425  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  930950 ttttttcccaccatgggaaaagttagtttttgaccatta 930988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 94; Significance: 1e-45; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 361 - 474
Target Start/End: Original strand, 20559745 - 20559858
Alignment:
Q  361 aggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 460  Q
    ||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |    
T  20559745 aggtgaggtttagcatgggaaagctattttttttccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatactccct 20559844  T
Q  461 catcactagatttt 474  Q
    ||||||||||||||    
T  20559845 catcactagatttt 20559858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 361 - 474
Target Start/End: Complemental strand, 20560330 - 20560217
Alignment:
Q  361 aggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 460  Q
    ||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |    
T  20560330 aggtgaggtttagcatgggaaagctatatttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatccttatcatactccct 20560231  T
Q  461 catcactagatttt 474  Q
    ||||||||||||||    
T  20560230 catcactagatttt 20560217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 361 - 479
Target Start/End: Complemental strand, 42901185 - 42901067
Alignment:
Q  361 aggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 460  Q
    ||||||||||||||| |  ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  |||||||||| | |    
T  42901185 aggtgaggtttagcatgaaaaagctatttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacattgttatcatactccct 42901086  T
Q  461 catcactagattttcttct 479  Q
    |||||||||||||||||||    
T  42901085 catcactagattttcttct 42901067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 400 - 497
Target Start/End: Original strand, 35211940 - 35212037
Alignment:
Q  400 atgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatcatcactagattttcttcttttgtcttcaacctcaca 497  Q
    |||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  35211940 atggaaaagttagtttttgaccattaaatcaaatcaagaacacattcttatcatacttcatcatcattagattttcttcttttgtcttcaacctcaca 35212037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 362 - 474
Target Start/End: Original strand, 33139774 - 33139886
Alignment:
Q  362 ggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatc 461  Q
    |||||||||||||| |||||||||| |||||| |||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||| | ||    
T  33139774 ggtgaggtttagcatgggaaagctactttttttccaccatgagaaagttggtttttgaccattagatcaaaccaagaacacatccttatcatactccctc 33139873  T
Q  462 atcactagatttt 474  Q
    |||||||||||||    
T  33139874 atcactagatttt 33139886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 362 - 474
Target Start/End: Complemental strand, 33140342 - 33140230
Alignment:
Q  362 ggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatc 461  Q
    |||||||||||| | ||||||| || |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| | ||    
T  33140342 ggtgaggtttagtatgggaaagttacttttttcccaccatgggaaagttagtttttgaccattagatcaaactaagaacacatccttatcatactccctc 33140243  T
Q  462 atcactagatttt 474  Q
    |||||||||||||    
T  33140242 atcactagatttt 33140230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 362 - 474
Target Start/End: Original strand, 4179637 - 4179749
Alignment:
Q  362 ggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatc 461  Q
    |||||||||||||| | |||| ||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||| | ||    
T  4179637 ggtgaggtttagcatgagaaaactatttttttcccaccatgggaaagttagtatttgaccattagatcaaaccaagaacacatccttaccatactccctc 4179736  T
Q  462 atcactagatttt 474  Q
    |||||||||||||    
T  4179737 atcactagatttt 4179749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 361 - 474
Target Start/End: Complemental strand, 4180387 - 4180274
Alignment:
Q  361 aggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 460  Q
    |||||||||||| || || |||||||  ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||| | |    
T  4180387 aggtgaggtttaacatggaaaagctacatttttcccaccatgggaaagttagtttttgaccattagatcaaactaagaacacatccttaccatactccct 4180288  T
Q  461 catcactagatttt 474  Q
    ||||||||||||||    
T  4180287 catcactagatttt 4180274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 362 - 482
Target Start/End: Original strand, 42900647 - 42900767
Alignment:
Q  362 ggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatc 461  Q
    |||||||||||||| || |||| || ||||||  |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||   ||    
T  42900647 ggtgaggtttagcatggaaaaggtacttttttttcaccatgggaaagttagtttttgaccattagatcaaatcaagaacacatccttatcatactcgttc 42900746  T
Q  462 atcactagattttcttctttt 482  Q
    ||||||| |||||||||||||    
T  42900747 atcactaaattttcttctttt 42900767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 360 - 474
Target Start/End: Original strand, 30414179 - 30414293
Alignment:
Q  360 taggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttc 458  Q
    ||||||| |||||| | ||||||| |||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||| |    
T  30414179 taggtgaagtttagtatgggaaaggctaatttt-tcccaccatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactcc 30414277  T
Q  459 atcatcactagatttt 474  Q
     |||||||||||||||    
T  30414278 ctcatcactagatttt 30414293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 362 - 474
Target Start/End: Complemental strand, 40641218 - 40641106
Alignment:
Q  362 ggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatc 461  Q
    |||||||||||||| ||||||| || ||||||   || |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| | |     
T  40641218 ggtgaggtttagcatgggaaagttactttttttttactatgggaaagttagtttttgaccattagatcaaatcaagaacacatccttatcatactccctt 40641119  T
Q  462 atcactagatttt 474  Q
    |||||||||||||    
T  40641118 atcactagatttt 40641106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 360 - 474
Target Start/End: Original strand, 25137410 - 25137524
Alignment:
Q  360 taggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttc 458  Q
    ||||||| |||||||| ||||||| |||||||| ||||||||||||||||||||||||| ||||||| |||||| ||| |||||||||||| |||||| |    
T  25137410 taggtgaagtttagcatgggaaaggctaatttt-tcccaccatgggaaagttagtttttaaccattagatcaaatcaataacacatccttaccatactcc 25137508  T
Q  459 atcatcactagatttt 474  Q
     |||||||||||||||    
T  25137509 ctcatcactagatttt 25137524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 362 - 474
Target Start/End: Original strand, 40640653 - 40640762
Alignment:
Q  362 ggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatc 461  Q
    |||||||||||||| ||||||  || |||||||||||   |||||||||||||||| | ||||||||||||||||||||||||| ||||||| || | ||    
T  40640653 ggtgaggtttagcatgggaaaattacttttttcccac---gggaaagttagtttttaatcattaaatcaaaccaagaacacatcattatcattctccctc 40640749  T
Q  462 atcactagatttt 474  Q
    |||||||||||||    
T  40640750 atcactagatttt 40640762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 362 - 474
Target Start/End: Complemental strand, 25137973 - 25137860
Alignment:
Q  362 ggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaa-ccaagaacacatccttatcatacttca 459  Q
    ||||| |||||||| ||||||| ||||||||| |||||||||||||| ||||||||| ||||||| |||||| | ||||||||||||||| |||||| |     
T  25137973 ggtgaagtttagcatgggaaagactaattttt-cccaccatgggaaaattagtttttaaccattagatcaaatcaaagaacacatccttaccatactccc 25137875  T
Q  460 tcatcactagatttt 474  Q
    |||||||||||||||    
T  25137874 tcatcactagatttt 25137860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 362 - 423
Target Start/End: Original strand, 33686926 - 33686987
Alignment:
Q  362 ggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccat 423  Q
    ||||| |||||||| ||||||| | | ||||||||||||||||||||||||||||| |||||    
T  33686926 ggtgaagtttagcatgggaaaggttaatttttcccaccatgggaaagttagtttttaaccat 33686987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 388 - 425
Target Start/End: Original strand, 29006374 - 29006411
Alignment:
Q  388 ttttttcccaccatgggaaagttagtttttgaccatta 425  Q
    |||||||||||||||||||||||||||||| |||||||    
T  29006374 ttttttcccaccatgggaaagttagtttttaaccatta 29006411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 388 - 425
Target Start/End: Complemental strand, 29007220 - 29007183
Alignment:
Q  388 ttttttcccaccatgggaaagttagtttttgaccatta 425  Q
    |||||||||||||||||||||||||||||| |||||||    
T  29007220 ttttttcccaccatgggaaagttagtttttaaccatta 29007183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 387 - 424
Target Start/End: Complemental strand, 41224865 - 41224828
Alignment:
Q  387 attttttcccaccatgggaaagttagtttttgaccatt 424  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  41224865 attttttcccaccatgggaaagttagtttttaaccatt 41224828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 361 - 424
Target Start/End: Complemental strand, 33687798 - 33687735
Alignment:
Q  361 aggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccatt 424  Q
    |||||| |||||||| ||||||| |||||||||||| |||||| |||||||||||||| ||||||    
T  33687798 aggtgaagtttagcatgggaaaggctaattttttcc-accatgagaaagttagtttttaaccatt 33687735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 432
Target Start/End: Original strand, 42607078 - 42607151
Alignment:
Q  359 ataggtgaggtttagcaagggaaagct-aattttttcccaccatgggaaagttagtttttgaccattaaatcaaa 432  Q
    ||||||| ||||||||| |||||||   |||| |||||||||||||||||||| ||||||| |||||| ||||||    
T  42607078 ataggtggggtttagcatgggaaaggggaattgtttcccaccatgggaaagtt-gtttttgtccattagatcaaa 42607151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 422
Target Start/End: Complemental strand, 35613264 - 35613231
Alignment:
Q  389 tttttcccaccatgggaaagttagtttttgacca 422  Q
    ||||||||||||||| ||||||||||||||||||    
T  35613264 tttttcccaccatggaaaagttagtttttgacca 35613231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 425
Target Start/End: Original strand, 44896073 - 44896110
Alignment:
Q  388 ttttttcccaccatgggaaagttagtttttgaccatta 425  Q
    ||||| |||||||||||||||||||||||| |||||||    
T  44896073 tttttccccaccatgggaaagttagtttttaaccatta 44896110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 424
Target Start/End: Original strand, 29314608 - 29314644
Alignment:
Q  388 ttttttcccaccatgggaaagttagtttttgaccatt 424  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  29314608 tttttttccaccatgggaaagttagtttttaaccatt 29314644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 364 - 501
Target Start/End: Complemental strand, 42977 - 42841
Alignment:
Q  364 tgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatcat 463  Q
    |||||||||||| | |||| ||| |||||||| |||||   |||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||    
T  42977 tgaggtttagcatgagaaaactacttttttcc-accataaaaaagttagtttttgaccattaaatcaaaccaagaacacatccttataatactccctcat 42879  T
Q  464 cactagattttcttcttttgtcttcaacctcacaacca 501  Q
    ||||||||||||||||||||||||||||||||||||||    
T  42878 cactagattttcttcttttgtcttcaacctcacaacca 42841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 3e-43; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 364 - 501
Target Start/End: Original strand, 52532125 - 52532262
Alignment:
Q  364 tgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatcat 463  Q
    |||||||||||| |||||| ||| ||||||||||||||||||||||| |||||||||||  | |||||||||||||| |||| |||| ||||| | ||||    
T  52532125 tgaggtttagcatgggaaaactacttttttcccaccatgggaaagtttgtttttgaccagcagatcaaaccaagaacgcatctttattatactccctcat 52532224  T
Q  464 cactagattttcttcttttgtcttcaacctcacaacca 501  Q
    ||||||||||||||||||||||||||||||||||||||    
T  52532225 cactagattttcttcttttgtcttcaacctcacaacca 52532262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 361 - 501
Target Start/End: Complemental strand, 52532479 - 52532339
Alignment:
Q  361 aggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 460  Q
    |||||||||||| || || ||||||| |||||||||||| | |||||||||||||||||||| || |||||||||||||||||||||| | ||||| | |    
T  52532479 aggtgaggtttaacatggaaaagctacttttttcccaccgttggaaagttagtttttgaccagtagatcaaaccaagaacacatccttgttatactccct 52532380  T
Q  461 catcactagattttcttcttttgtcttcaacctcacaacca 501  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  52532379 catcattagattttcttcttttgtcttcaacctcacaacca 52532339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 362 - 474
Target Start/End: Original strand, 19860330 - 19860442
Alignment:
Q  362 ggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatc 461  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||| | ||    
T  19860330 ggtgaggtttagcatgggaaagctatttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatacttaccatactccctc 19860429  T
Q  462 atcactagatttt 474  Q
    |||||||||||||    
T  19860430 atcactagatttt 19860442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 361 - 499
Target Start/End: Complemental strand, 5259377 - 5259239
Alignment:
Q  361 aggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 460  Q
    ||||||||||||||| | |||| ||| ||||||  || |||||||||||||||||| |||||||| |||||| |||||||||||| |||||||||| | |    
T  5259377 aggtgaggtttagcatgagaaaactacttttttttcatcatgggaaagttagttttcgaccattagatcaaatcaagaacacatctttatcatactcctt 5259278  T
Q  461 catcactagattttcttcttttgtcttcaacctcacaac 499  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  5259277 catcactagattttcttcttttgttttcaacctcacaac 5259239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 361 - 474
Target Start/End: Complemental strand, 19860921 - 19860808
Alignment:
Q  361 aggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 460  Q
    ||||||||||||||| |||||| ||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| | |    
T  19860921 aggtgaggtttagcatgggaaacctacttttttcccaccgtgggaaagttagtttttgaccattagatcaaaccaagaacacatccttttcatactccct 19860822  T
Q  461 catcactagatttt 474  Q
    ||||||||||||||    
T  19860821 catcactagatttt 19860808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 361 - 474
Target Start/End: Original strand, 20174969 - 20175082
Alignment:
Q  361 aggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttca 459  Q
    |||||| |||||||| ||||||| |||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |     
T  20174969 aggtgaagtttagcatgggaaaggctaatttt-tcccaccatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttatcatactccc 20175067  T
Q  460 tcatcactagatttt 474  Q
    |||||||||||||||    
T  20175068 tcatcactagatttt 20175082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 361 - 474
Target Start/End: Original strand, 5235373 - 5235486
Alignment:
Q  361 aggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttca 459  Q
    |||||| |||||||| ||||||| |||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||       
T  5235373 aggtgaagtttagcatgggaaaggctaatttt-tcccaccatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttatcatactcac 5235471  T
Q  460 tcatcactagatttt 474  Q
    |||||||||||||||    
T  5235472 tcatcactagatttt 5235486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 361 - 474
Target Start/End: Complemental strand, 6934551 - 6934438
Alignment:
Q  361 aggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttca 459  Q
    |||||| |||||||| ||||||| |||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||| |     
T  6934551 aggtgaagtttagcatgggaaagactaattttttcc-accatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccc 6934453  T
Q  460 tcatcactagatttt 474  Q
    |||||||||||||||    
T  6934452 tcatcactagatttt 6934438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 361 - 474
Target Start/End: Original strand, 6933820 - 6933933
Alignment:
Q  361 aggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttca 459  Q
    |||||| |||||||| ||||||| |||||||||||| | ||||| ||||||||||||| ||||||| ||||||||||||||||||||||| |||||| |     
T  6933820 aggtgaagtttagcatgggaaagactaattttttcc-atcatggaaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccc 6933918  T
Q  460 tcatcactagatttt 474  Q
    |||||||||||||||    
T  6933919 tcatcactagatttt 6933933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 361 - 474
Target Start/End: Complemental strand, 5235935 - 5235822
Alignment:
Q  361 aggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttca 459  Q
    |||||| |||||||| ||||||  ||||||||| || ||||| ||||||||||||||| ||||||| ||||||||||||||||||||||| |||||| |     
T  5235935 aggtgaagtttagcatgggaaaaactaattttt-cctaccataggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccc 5235837  T
Q  460 tcatcactagatttt 474  Q
    |||||||||||||||    
T  5235836 tcatcactagatttt 5235822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 359 - 474
Target Start/End: Complemental strand, 30213966 - 30213851
Alignment:
Q  359 ataggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttc 458  Q
    |||||||||||||| || |||||| ||| |||||| | ||||||  ||||||||||||||||||||| ||||||||||||| | ||  |||||||||| |    
T  30213966 ataggtgaggtttatcatgggaaaactactttttttctaccatgaaaaagttagtttttgaccattagatcaaaccaagaatatatttttatcatactcc 30213867  T
Q  459 atcatcactagatttt 474  Q
     |||||||||||||||    
T  30213866 ctcatcactagatttt 30213851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 388 - 428
Target Start/End: Original strand, 46764279 - 46764319
Alignment:
Q  388 ttttttcccaccatgggaaagttagtttttgaccattaaat 428  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  46764279 ttttttcccaccatgggaaagttagtttttgaccattaaat 46764319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 388 - 425
Target Start/End: Original strand, 11680303 - 11680340
Alignment:
Q  388 ttttttcccaccatgggaaagttagtttttgaccatta 425  Q
    ||||||||||||||||||||||||||||||||||||||    
T  11680303 ttttttcccaccatgggaaagttagtttttgaccatta 11680340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 388 - 425
Target Start/End: Original strand, 11688582 - 11688619
Alignment:
Q  388 ttttttcccaccatgggaaagttagtttttgaccatta 425  Q
    ||||||||||||||||||||||||||||||||||||||    
T  11688582 ttttttcccaccatgggaaagttagtttttgaccatta 11688619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 388 - 425
Target Start/End: Complemental strand, 25655660 - 25655623
Alignment:
Q  388 ttttttcccaccatgggaaagttagtttttgaccatta 425  Q
    ||||||||||||||||||||||||||||||||||||||    
T  25655660 ttttttcccaccatgggaaagttagtttttgaccatta 25655623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 388 - 428
Target Start/End: Original strand, 31910581 - 31910621
Alignment:
Q  388 ttttttcccaccatgggaaagttagtttttgaccattaaat 428  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  31910581 ttttttcccaccatgggaaagttagtttttaaccattaaat 31910621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 425
Target Start/End: Complemental strand, 12590229 - 12590187
Alignment:
Q  383 gctaattttttcccaccatgggaaagttagtttttgaccatta 425  Q
    |||| |||||| |||||||||||||||||||||||||||||||    
T  12590229 gctagtttttttccaccatgggaaagttagtttttgaccatta 12590187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 414 - 474
Target Start/End: Complemental strand, 20175421 - 20175361
Alignment:
Q  414 ttttgaccattaaatcaaaccaagaacacatccttatcatacttcatcatcactagatttt 474  Q
    |||| ||||||| |||||||||| |||||||||||| ||| || | |||||||||||||||    
T  20175421 ttttaaccattagatcaaaccaataacacatccttaccatgctccctcatcactagatttt 20175361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 501
Target Start/End: Original strand, 39412771 - 39412905
Alignment:
Q  368 gtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatcatcac 466  Q
    |||||||| ||||||| ||||||||| |||| ||||||||||||||||||| ||||||  ||||||  |  ||||||  |||||||| || | | | ||     
T  39412771 gtttagcatgggaaaggctaattttt-cccatcatgggaaagttagtttttaaccattggatcaaatgataaacacactcttatcatgctcctttaacat 39412869  T
Q  467 taga-ttttcttcttttgtcttcaacctcacaacca 501  Q
    |||| |||||| | ||| ||||||||||||||||||    
T  39412870 tagatttttctccatttctcttcaacctcacaacca 39412905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 424
Target Start/End: Complemental strand, 3167525 - 3167463
Alignment:
Q  362 ggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccatt 424  Q
    |||| ||||||||| ||||||| | | ||||||||||||||||||||||  ||||| ||||||    
T  3167525 ggtggggtttagcatgggaaagattactttttcccaccatgggaaagttgttttttaaccatt 3167463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 432
Target Start/End: Original strand, 3847913 - 3847957
Alignment:
Q  388 ttttttcccaccatgggaaagttagtttttgaccattaaatcaaa 432  Q
    ||||||||||||||||||||||   ||||||||||||| ||||||    
T  3847913 ttttttcccaccatgggaaagtatttttttgaccattagatcaaa 3847957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 424
Target Start/End: Complemental strand, 39413670 - 39413607
Alignment:
Q  361 aggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccatt 424  Q
    |||||| |||||| | ||||||| ||||||||| |||||||| ||||||||||||||| ||||||    
T  39413670 aggtgaagtttagaatgggaaagactaattttt-cccaccataggaaagttagtttttaaccatt 39413607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 3e-40; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 362 - 474
Target Start/End: Original strand, 3705337 - 3705449
Alignment:
Q  362 ggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatc 461  Q
    ||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| | ||    
T  3705337 ggtgaggtttagcataggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatccatatcatactccctc 3705436  T
Q  462 atcactagatttt 474  Q
    |||||||||||||    
T  3705437 atcactagatttt 3705449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 362 - 474
Target Start/End: Original strand, 16681566 - 16681678
Alignment:
Q  362 ggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatc 461  Q
    |||||||||||||| |||||||||| || ||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| | ||    
T  16681566 ggtgaggtttagcatgggaaagctagttatttcccatcatgggaaagttagtttttggccattagatcaaaccaagaacacatccttatcatactccctc 16681665  T
Q  462 atcactagatttt 474  Q
    |||||||||||||    
T  16681666 atcactagatttt 16681678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 360 - 474
Target Start/End: Complemental strand, 3705876 - 3705760
Alignment:
Q  360 taggtgaggtttagcaagggaaagctaattttttc--ccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatactt 457  Q
    |||||||||||||||| |||||  ||| ||||||   ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||     
T  3705876 taggtgaggtttagcatgggaagactactttttttttccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatccttatcatactc 3705777  T
Q  458 catcatcactagatttt 474  Q
    | |||||||||||||||    
T  3705776 cttcatcactagatttt 3705760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 362 - 474
Target Start/End: Original strand, 30899390 - 30899502
Alignment:
Q  362 ggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 460  Q
    ||||| |||||||| ||||||| |||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||| | |    
T  30899390 ggtgaagtttagcatgggaaaggctaatttt-tcccaccatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccct 30899488  T
Q  461 catcactagatttt 474  Q
    ||||||||||||||    
T  30899489 catcactagatttt 30899502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 361 - 474
Target Start/End: Complemental strand, 15562089 - 15561976
Alignment:
Q  361 aggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttca 459  Q
    |||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| ||||||| || |||||||||||||||||||| |||||| |     
T  15562089 aggtgaagtttagcatgggaaaggctaattttt-cccaccatgggaaagttagtttttaaccattagattaaaccaagaacacatccttaccatactccc 15561991  T
Q  460 tcatcactagatttt 474  Q
    |||||||||||||||    
T  15561990 tcatcactagatttt 15561976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 361 - 474
Target Start/End: Complemental strand, 16903946 - 16903833
Alignment:
Q  361 aggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttca 459  Q
    |||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||| |||||| |     
T  16903946 aggtgaagtttagcatgggaaaggctaattttt-cccaccatgggaaagttagtttttaaccattagatcaaactaagaacacatccttaccatactccc 16903848  T
Q  460 tcatcactagatttt 474  Q
    |||||||||||||||    
T  16903847 tcatcactagatttt 16903833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 361 - 474
Target Start/End: Complemental strand, 16992441 - 16992327
Alignment:
Q  361 aggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttca 459  Q
    |||||| |||||||| ||||||| ||||||||| | |||||||||||||||||||||| ||||||| ||||||| ||||||||||||||| |||||| |     
T  16992441 aggtgaagtttagcatgggaaaggctaatttttcctcaccatgggaaagttagtttttaaccattagatcaaactaagaacacatccttaccatactccc 16992342  T
Q  460 tcatcactagatttt 474  Q
    |||||||||||||||    
T  16992341 tcatcactagatttt 16992327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 362 - 474
Target Start/End: Complemental strand, 6610091 - 6609979
Alignment:
Q  362 ggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 460  Q
    ||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| ||||||| || |||||||||||||||||||| |||||| | |    
T  6610091 ggtgaagtttagcatgggaaaggctaattttt-cccaccatgggaaagttagtttttaaccattagattaaaccaagaacacatccttaccatactccct 6609993  T
Q  461 catcactagatttt 474  Q
    ||||||||||||||    
T  6609992 catcactagatttt 6609979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 362 - 474
Target Start/End: Complemental strand, 7994621 - 7994509
Alignment:
Q  362 ggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 460  Q
    ||||| |||||||| ||||||| |||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||| | |    
T  7994621 ggtgaagtttagcatgggaaaggctaattttttcc-accatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccct 7994523  T
Q  461 catcactagatttt 474  Q
    |||| |||||||||    
T  7994522 catcgctagatttt 7994509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 361 - 474
Target Start/End: Original strand, 15561540 - 15561653
Alignment:
Q  361 aggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttca 459  Q
    |||||| |||||||| ||||||| |||||||| ||||||||| ||||||||||||||| ||||||| ||||||| ||||||||||||||| |||||| |     
T  15561540 aggtgaagtttagcatgggaaagactaatttt-tcccaccattggaaagttagtttttaaccattagatcaaactaagaacacatccttaccatactccc 15561638  T
Q  460 tcatcactagatttt 474  Q
    |||||||||||||||    
T  15561639 tcatcactagatttt 15561653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 389 - 474
Target Start/End: Original strand, 7994082 - 7994167
Alignment:
Q  389 tttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatcatcactagatttt 474  Q
    ||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||| | |||||||||||||||    
T  7994082 tttttcccatcatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccctcatcactagatttt 7994167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 361 - 456
Target Start/End: Complemental strand, 37996632 - 37996537
Alignment:
Q  361 aggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatact 456  Q
    |||||| |||||||| ||||||| ||||||||| |||| ||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||    
T  37996632 aggtgaagtttagcatgggaaaggctaattttt-cccatcatgggaaagttagtttttaaccattagatcaaatcaagaacacatccttatcatact 37996537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 389 - 474
Target Start/End: Original strand, 16903425 - 16903509
Alignment:
Q  389 tttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatcatcactagatttt 474  Q
    ||||||||||||||| ||||||||||||| ||||||| |||||| |||||||||||||||| |||||| | |||||||||||||||    
T  16903425 tttttcccaccatggaaaagttagtttttaaccattagatcaaa-caagaacacatccttaccatactccctcatcactagatttt 16903509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 362 - 474
Target Start/End: Complemental strand, 30899949 - 30899837
Alignment:
Q  362 ggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 460  Q
    ||||| |||||||| ||||||| ||||||||| |||||||||  ||||||||||||| || |||| ||||||||||||||||||||||| |||||| | |    
T  30899949 ggtgaagtttagcatgggaaaggctaattttt-cccaccatgaaaaagttagtttttaactattagatcaaaccaagaacacatccttaccatactccct 30899851  T
Q  461 catcactagatttt 474  Q
    ||||| ||||||||    
T  30899850 catcattagatttt 30899837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 363 - 474
Target Start/End: Original strand, 6609552 - 6609663
Alignment:
Q  363 gtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatc 461  Q
    |||| |||||||| ||||||| |||||||| ||||||||||| ||||||||||||| ||||||| || ||||||| |||||||||||| |||||| | ||    
T  6609552 gtgaagtttagcatgggaaaggctaatttt-tcccaccatggaaaagttagtttttaaccattagatgaaaccaacaacacatccttaccatactccctc 6609650  T
Q  462 atcactagatttt 474  Q
     ||||||||||||    
T  6609651 ttcactagatttt 6609663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 388 - 445
Target Start/End: Complemental strand, 16682288 - 16682231
Alignment:
Q  388 ttttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatc 445  Q
    |||||||||||  ||| |||||||||||||||| |||||||||||| |||||||||||    
T  16682288 ttttttcccacattggcaaagttagtttttgactattaaatcaaacgaagaacacatc 16682231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 361 - 425
Target Start/End: Original strand, 34617652 - 34617716
Alignment:
Q  361 aggtgaggtttagcaagggaaagc-taattttttcccaccatgggaaagttagtttttgaccatta 425  Q
    ||||| ||||||||| |||||||  ||||| ||||||||||||||||||||| |||||||||||||    
T  34617652 aggtggggtttagcatgggaaaggataattgtttcccaccatgggaaagtta-tttttgaccatta 34617716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 424
Target Start/End: Original strand, 40992249 - 40992285
Alignment:
Q  388 ttttttcccaccatgggaaagttagtttttgaccatt 424  Q
    |||||||| ||||||||||||||||||||| ||||||    
T  40992249 ttttttcctaccatgggaaagttagtttttaaccatt 40992285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 359 - 474
Target Start/End: Original strand, 4130 - 4245
Alignment:
Q  359 ataggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatactt 457  Q
    |||||||| |||||||| ||||||| |||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||     
T  4130 ataggtgaagtttagcatgggaaaggctaatttt-tcccaccatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactc 4228  T
Q  458 catcatcactagatttt 474  Q
    | |||||||||||||||    
T  4229 cctcatcactagatttt 4245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 362 - 474
Target Start/End: Complemental strand, 4672 - 4560
Alignment:
Q  362 ggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 460  Q
    ||||| |||||||| ||||||| |||||||||||| | ||||||||||||||||||| || |||| ||||||||||||||||||||||| |||||| | |    
T  4672 ggtgaagtttagcatgggaaagactaattttttcc-atcatgggaaagttagtttttaacaattagatcaaaccaagaacacatccttaccatactccct 4574  T
Q  461 catcactagatttt 474  Q
    ||||||||||||||    
T  4573 catcactagatttt 4560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 361 - 474
Target Start/End: Original strand, 61573 - 61686
Alignment:
Q  361 aggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttca 459  Q
    |||||| |||||||| ||||||| ||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |     
T  61573 aggtgaagtttagcatgggaaaggctaattttt-cccatcatgggaaagttagtttttgaccattagatcaaaccaagaacacatccttctcatactccc 61671  T
Q  460 tcatcactagatttt 474  Q
    |||||||||||||||    
T  61672 tcatcactagatttt 61686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 408 - 474
Target Start/End: Complemental strand, 62089 - 62023
Alignment:
Q  408 gttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatcatcactagatttt 474  Q
    |||||||||| | ||||| |||||||||||| |||||||||| |||||| | |||||||||||||||    
T  62089 gttagttttttagcattagatcaaaccaagatcacatccttaccatactccctcatcactagatttt 62023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 389 - 474
Target Start/End: Complemental strand, 202304 - 202219
Alignment:
Q  389 tttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatcatcactagatttt 474  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||| | |||||||||||||||    
T  202304 tttttcccaccatggaaaagttagtttttaaccattaaatcaaaccaagaacacatccttaccatactccctcatcactagatttt 202219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 359 - 433
Target Start/End: Complemental strand, 22278 - 22203
Alignment:
Q  359 ataggtgaggtttagcaagggaaagctaattttttc-ccaccatgggaaagttagtttttgaccattaaatcaaac 433  Q
    |||||||  |||||||| |||||||||| ||||||  ||||||||||||| || |||||||||||||| |||||||    
T  22278 ataggtggcgtttagcatgggaaagctacttttttttccaccatgggaaaatttgtttttgaccattagatcaaac 22203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 424
Target Start/End: Original strand, 17366 - 17402
Alignment:
Q  388 ttttttcccaccatgggaaagttagtttttgaccatt 424  Q
    |||||||||||||||||||||||||||||| ||||||    
T  17366 ttttttcccaccatgggaaagttagtttttaaccatt 17402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University