View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5049-Insertion-8 (Length: 490)
Name: NF5049-Insertion-8
Description: NF5049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5049-Insertion-8 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 8 - 490
Target Start/End: Complemental strand, 51005516 - 51005037
Alignment:
| Q |
8 |
gtttgataccttggagaattctacacttgaagtttgaagttggaatccttttgtgttaaatttttgtgtgttgattagtatacataactttgatctaact |
107 |
Q |
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| T |
51005516 |
gtttgataccttggagaattctacacttgaagtttgaagttggaatccttttgtgttaaatttttgtgtgttgattagtatacataactttgatctaact |
51005417 |
T |
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| Q |
108 |
ttaattaagtccaacaaggatattgaaatgtgaaacacattaaaatcactaacagatccatgacaaacaatgtaacagagcagctaaaatcttgtatgtt |
207 |
Q |
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| T |
51005416 |
ttaattaagtccaacaaggatattgaaatgtgaaacacattaaaatcactaacagaaacatgacaaacaatttaacagagcagctaaaatcttgtatgtt |
51005317 |
T |
|
| Q |
208 |
caaaattcaa-tttgtttaccaaag--nnnnnnnnnctt--gtttacctttcctccttgaaatactgggagatataatgtgtggtaaaattcccatgcag |
302 |
Q |
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| T |
51005316 |
caaaattcaattttgtttaccaaagaaaaaaaaaaacttaagtttaactttcctccttgaaatactgggagatataatgtgtggtaaaattcccatgcag |
51005217 |
T |
|
| Q |
303 |
attctctaaagaaatcacttaaaaatttcatcttatgtaacatcaagacatcaagttagaatcaacacataattttacaaatgaagcatcttctggatgg |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51005216 |
attctctaaagaaatcacttaaaaatttcatcttatgta--------acatcaagttagaatcaacacataattttacaaatgaagcatcttctggatgg |
51005125 |
T |
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| Q |
403 |
tatttccaactttttcactggttattttaaaatgaatgatattattagttctttacacatttaaaatttcttatgacgaagtttttca |
490 |
Q |
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| T |
51005124 |
tatttccaactctttcactggttattttaaaataaatgaaataattagttctttacacatttaaaatttcttatgacgaagtttttca |
51005037 |
T |
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