View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5049-Insertion-9 (Length: 428)
Name: NF5049-Insertion-9
Description: NF5049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5049-Insertion-9 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 7 - 425
Target Start/End: Original strand, 8160193 - 8160594
Alignment:
| Q |
7 |
acaaggtagtggacaatgttagatcgataacataaacagtggaaaatgatactagaatattcgaatttgattgcagtgtacaaaggatatttatatgcca |
106 |
Q |
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| T |
8160193 |
acaaggtagtggacaatgttagatcgataacataaacagaggaaaatgatactggaatattcagattcgattgcagtgtacaaatgatatttatatgcca |
8160292 |
T |
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| Q |
107 |
gaaatnnnnnnnnnncaaatttccacttttt-aacaacaattaaaaccgaatgatctatgataagttattgtttccttttctctacgttaaatcacaact |
205 |
Q |
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| T |
8160293 |
gaaa---aaaaaaatcaaatttccatttttttaataacaattaaaaccgaatgatctatgataaattattgtttccttttctctacgttaaatcacaact |
8160389 |
T |
|
| Q |
206 |
caaaaattttcaaggccatttccagccacaactcacaaaagttatcacaccaataaaagttttaatgttatatttccatacaaaatccaaattgccgact |
305 |
Q |
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| T |
8160390 |
caaaaaatttcaaggccatctccggccacaattcacaaaagttatcacaccaataaaagtttt-atgttatatttccgtacaaaatccgaattgc----- |
8160483 |
T |
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| Q |
306 |
atcctatggtgtagtgtaggtatatgggctttcacaaacacactttttcctcatttaaattatcattttattttttaaagtttaaactatcacatgttct |
405 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8160484 |
---------tgtcgtgtaggtatatgggctttcacaaacacactttttcctcatttaaattatcattttattttttaaagtttaaactatcacatgttct |
8160574 |
T |
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| Q |
406 |
cctcgcaataatatttaaat |
425 |
Q |
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| T |
8160575 |
cctcgcaataatatttaaat |
8160594 |
T |
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