View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5049_high_1 (Length: 783)
Name: NF5049_high_1
Description: NF5049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5049_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 329 - 774
Target Start/End: Complemental strand, 14569671 - 14569223
Alignment:
| Q |
329 |
agtacaagagaggttcgtgactgaaaatagttattagtccagtccaatgactcaagatgttttagatatcctaaagaagaaatgctacctgagaaa-gca |
427 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
|
|
| T |
14569671 |
agtacaagagaggttcgtaactgaaagtagttattagaccagtccaatgactcaagatgttttagatatcctaaagaagaaatactacctgagaaaagca |
14569572 |
T |
|
| Q |
428 |
ttgtgtgacaagttaagacttaagagcatggagtgctgcgagactcataagcttctttgttattggccattcaaagtggttggattggatgagaaatcca |
527 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14569571 |
ttgtgtgacaagttaagacttaagagcatggagtgctgtgagactcataagctcctttgttattggccattcaaagtggttggattggatgagaaatcca |
14569472 |
T |
|
| Q |
528 |
aggaagtaaaggaaacgaaaattttaaccaaattcaactgttgacaattgtaattgaagcctcataactt-caagaccaacaccttcctcaaagatatga |
626 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
14569471 |
aggaagtaaaggaaacgagaattttaaccaaattcaactgttgacaattgtaattgaagcctcataacttccaagaccaacaccttcctcaaagatatga |
14569372 |
T |
|
| Q |
627 |
gagaatcaatgcttgccgactttgtgagagttttgttggtaacatgccattagtattaagaca---caccaaaccatataaaggtggcatctacttgact |
723 |
Q |
| |
|
||||||||| ||||||| ||||||| |||| |||||||||||||||| ||| |||| ||||| ||||| |||||| ||||||||||||||||||||| |
|
|
| T |
14569371 |
gagaatcaacgcttgccaactttgt--gagtgttgttggtaacatgcctttactattgagacacaccaccataccatacaaaggtggcatctacttgact |
14569274 |
T |
|
| Q |
724 |
tcaatccgacaagattgttgcaaacttgctataaaccccacaggttctgct |
774 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||||||||| | |||||| |
|
|
| T |
14569273 |
tcaatccagcaagcttgttgcaaacttgctataaaccccacaagctctgct |
14569223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 22 - 307
Target Start/End: Complemental strand, 14560290 - 14560008
Alignment:
| Q |
22 |
ttcttcctacttgaaattctatacatctatcctccaagatgttcatacacaatacaaagtcgaggaacaatcttataaagcatatcatctatattctttg |
121 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||| |||| |||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
14560290 |
ttcttcctacttaaaattctatacatctgtcctccacgatgatcatacacaaaacaaagccgaggaacaatcttataaagcatatcatcaatattctttg |
14560191 |
T |
|
| Q |
122 |
aataccaaatcctccttctcttcaagaaaataataagagggaggaagaaaactccaaagctacaagtgaatcccaactcaacacttaagaaattccaatc |
221 |
Q |
| |
|
||||||||| ||||| ||||||||||||| |||||||| ||||| ||||||| ||| | | |||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
14560190 |
aataccaaaacctccatctcttcaagaaa---ataagaggaaggaaaaaaactctaaaaccaaaagtgaatcccacctcaacacttaagaaatttcaatc |
14560094 |
T |
|
| Q |
222 |
aattgaacccctgtcatgaaaataaggtgtttcatatgcttgttgtgacaagcttttccctccttcaccaacacaattttgtgtca |
307 |
Q |
| |
|
|||| ||| ||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
14560093 |
aattaaactcctttcatgataataacgtgtttcatatgcttgttgtgacaagcttttccctccttcaccaccacagttttgtgtca |
14560008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 128 - 307
Target Start/End: Complemental strand, 14569939 - 14569763
Alignment:
| Q |
128 |
aaatcctccttctcttcaagaaaataataagagggaggaagaaaactccaaagctacaagtgaatcccaactcaacacttaagaaattccaatcaattga |
227 |
Q |
| |
|
|||||||| ||||||||||||||||| | | |||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
14569939 |
aaatcctctatctcttcaagaaaataaaa---gcgaggaagaaaactccaaatctacaagtgaattccaactcaacacttaagaaattctaatcaattga |
14569843 |
T |
|
| Q |
228 |
acccctgtcatgaaaataaggtgtttcatatgcttgttgtgacaagcttttccctccttcaccaacacaattttgtgtca |
307 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14569842 |
acccctgtcgtgaaaataaggtgtttcatatgcttgttgttacaagcttttccctccttcaccaacacaattttgtgtca |
14569763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 22 - 172
Target Start/End: Complemental strand, 14570085 - 14569938
Alignment:
| Q |
22 |
ttcttcctacttgaaattctatacatctatcctccaagatgttcatacacaatacaaagtcgaggaacaatcttataaagcatatcatctatattctttg |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
14570085 |
ttcttcctacttgaaattctatacatctatcctccaagatgttcatacacaaaacaaagccgaggaacaatcttacaaagcatatcatagatattcttca |
14569986 |
T |
|
| Q |
122 |
aataccaaatcctccttctcttcaagaaaataataagagggaggaagaaaa |
172 |
Q |
| |
|
| ||||||||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
14569985 |
agtaccaaatcctccatctcttcaagaaa---ataagagggaggaagaaaa |
14569938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 370 - 630
Target Start/End: Complemental strand, 14559832 - 14559570
Alignment:
| Q |
370 |
gtccaatgactcaagatgttttagatatcctaaagaagaa---atgctacctgagaaagcattgtgtgacaagttaagacttaagagcatggagtgctgc |
466 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||| || |||||| ||||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
14559832 |
gtccaatgactccagatgttttagatttcctaaagaataaggaatgctatctgagaaagcattttgtgacaagttaaga-------gcatggagtgctgt |
14559740 |
T |
|
| Q |
467 |
gagactcataagcttctttgttattggccattcaaagtggttggattggatgagaaatccaaggaagtaaaggaaacgaaaattttaaccaaattcaact |
566 |
Q |
| |
|
|||||||||||||| | ||| |||||||| ||||| | | ||||||||||||||||| |||||||||| || || ||||||| |||||||||||| |
|
|
| T |
14559739 |
gagactcataagctccattggtattggcccatcaaatttg-----ttggatgagaaatccaatgaagtaaaggcaatgagaattttagccaaattcaact |
14559645 |
T |
|
| Q |
567 |
gttgac----------aattgtaattgaagcctcataacttc-aagaccaacaccttcctcaaagatatgagaga |
630 |
Q |
| |
|
|||||| |||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
14559644 |
gttgacctttgttgaaaattgtaactgaatcctcataacttctaagaccaacaccttcctcaaagatatgagaga |
14559570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 566 - 630
Target Start/End: Complemental strand, 32549001 - 32548936
Alignment:
| Q |
566 |
tgttgacaattgtaattgaagcctcataacttc-aagaccaacaccttcctcaaagatatgagaga |
630 |
Q |
| |
|
|||| |||||||||| |||| |||||||| ||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
32549001 |
tgttaacaattgtaactgaatcctcataagttctaagaccaacaccttcctcaaaaatatgagaga |
32548936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 224
Target Start/End: Complemental strand, 32549594 - 32549451
Alignment:
| Q |
78 |
aagtcgaggaacaatcttataaagcatatcatctatattctttgaataccaaatcctccttctcttcaagaaaataataagagggaggaagaaaactcca |
177 |
Q |
| |
|
|||| |||||| ||| |||||||||| ||||| | ||||| || ||||| ||||||| ||||||| | || |||||| || || | |||| |||| |
|
|
| T |
32549594 |
aagttgaggaatgatcctataaagcatgtcatccaccttcttggagtaccacatcctccatctcttcca---aagaataaggggtagtatcaaaattcca |
32549498 |
T |
|
| Q |
178 |
aagctacaagtgaatcccaactcaacacttaagaaattccaatcaat |
224 |
Q |
| |
|
|| | | ||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
32549497 |
aaaccaaaagtgaatcccaactcagcactcaagaaattccaatcaat |
32549451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 153 - 229
Target Start/End: Original strand, 5345745 - 5345821
Alignment:
| Q |
153 |
aataagagggaggaagaaaactccaaagctacaagtgaatcccaactcaacacttaagaaattccaatcaattgaac |
229 |
Q |
| |
|
|||||| ||||||| ||||| |||||||| | || | ||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
5345745 |
aataagggggaggaggaaaattccaaagccaaaaataaatcccaactccacacttaagaagttccaatcaattgaac |
5345821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 153 - 228
Target Start/End: Complemental strand, 5379655 - 5379580
Alignment:
| Q |
153 |
aataagagggaggaagaaaactccaaagctacaagtgaatcccaactcaacacttaagaaattccaatcaattgaa |
228 |
Q |
| |
|
|||||| ||||||| ||||| |||||||| | || | ||||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
5379655 |
aataagggggaggatgaaaattccaaagccaaaaataaatcccaactccacacttaagagattccaatcaattgaa |
5379580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 5357418 - 5357357
Alignment:
| Q |
168 |
gaaaactccaaagctacaagtgaatcccaactcaacacttaagaaattccaatcaattgaac |
229 |
Q |
| |
|
|||||||||||||| || | ||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
5357418 |
gaaaactccaaagccgaaaataaatcccaactccacacttaagaaattccaatcaattgaac |
5357357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 160 - 229
Target Start/End: Original strand, 5423069 - 5423138
Alignment:
| Q |
160 |
gggaggaagaaaactccaaagctacaagtgaatcccaactcaacacttaagaaattccaatcaattgaac |
229 |
Q |
| |
|
||||||| ||||| ||||| || | || | ||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
5423069 |
gggaggatgaaaattccaaggccaaaaataaatcccaactccacacttaagaaattccaatcaattgaac |
5423138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 229
Target Start/End: Complemental strand, 5355319 - 5355243
Alignment:
| Q |
153 |
aataagagggaggaagaaaactccaaagctacaagtgaatcccaactcaacacttaagaaattccaatcaattgaac |
229 |
Q |
| |
|
|||||| ||||||| ||||| |||||||| | || | ||||||||||| | |||||||||||||||||| ||||||| |
|
|
| T |
5355319 |
aataagggggaggatgaaaattccaaagccaaaaataaatcccaactccaaacttaagaaattccaatcgattgaac |
5355243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 229
Target Start/End: Complemental strand, 5363793 - 5363717
Alignment:
| Q |
153 |
aataagagggaggaagaaaactccaaagctacaagtgaatcccaactcaacacttaagaaattccaatcaattgaac |
229 |
Q |
| |
|
|||||| ||||||| ||||| |||||| | | || | ||||||||||| |||||||||||| |||| |||||||||| |
|
|
| T |
5363793 |
aataagggggaggatgaaaattccaaacccaaaaataaatcccaactccacacttaagaaactccagtcaattgaac |
5363717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 229
Target Start/End: Complemental strand, 5891199 - 5891160
Alignment:
| Q |
190 |
aatcccaactcaacacttaagaaattccaatcaattgaac |
229 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
5891199 |
aatcccaactccacacttaaaaaattccaatcaattgaac |
5891160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 160 - 229
Target Start/End: Complemental strand, 20329833 - 20329764
Alignment:
| Q |
160 |
gggaggaagaaaactccaaagctacaagtgaatcccaactcaacacttaagaaattccaatcaattgaac |
229 |
Q |
| |
|
||||||| ||||| ||||| || | || | ||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
20329833 |
gggaggatgaaaattccaaggccaaaaataaatcccaactccacacttaagaaattccaatcaattgaac |
20329764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University