View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5049_low_2 (Length: 423)
Name: NF5049_low_2
Description: NF5049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5049_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 13 - 404
Target Start/End: Original strand, 42623143 - 42623535
Alignment:
| Q |
13 |
aatatgcataaccaatgttggcttattgctatctacacctccctccattttgcatgcaagtgtcatgtgtttccaaatgaaagcagccaatgcttcatat |
112 |
Q |
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| T |
42623143 |
aatatgcataaccaatgttggcttattgctatctacacctccctccattttgcatgcaagtgtcatgtgtttccaaatgaaagcagccaatgcttcatat |
42623242 |
T |
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| Q |
113 |
cttgtaggaaacttataattttcattaacattatcattatcatcgtcgtcttttgctttagcttttaaagtttcgatggattcagagccgaacacgaatc |
212 |
Q |
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| T |
42623243 |
cttgtaggaaacttataattttcataaacattatcattatcatcgtcgtcttttgctttagctcttaaagtttcgatggattcagagccgaacacgaatc |
42623342 |
T |
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| Q |
213 |
ttcttgtgctaca-nnnnnnngtacgtctatgtcctcattagtattcttaccaacatgatttatcggtggaaagaaagaagaagcagaaaagaagtcggg |
311 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
42623343 |
ttcttgtgctacattttttttgtacgtctatgtcctcattagtattcttaccaacatgatttattggtggaaagaaagaagaagcagaaaagaagtcggg |
42623442 |
T |
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| Q |
312 |
gcatggtaattcgtctttagaggcgccgcgacaaatggcagcccaagtagtttggaagagactgccggaacaaccgtcgaggagggtatggag |
404 |
Q |
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|||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42623443 |
gcatggtaattcatctttagaggtgccgcgacaaatggcagcccaaatagtttggaagagactgccggaacaaccgtcgaggagggtatggag |
42623535 |
T |
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