View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5049_low_3 (Length: 257)

Name: NF5049_low_3
Description: NF5049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5049_low_3
NF5049_low_3
[»] chr4 (3 HSPs)
chr4 (109-250)||(53400896-53401037)
chr4 (15-87)||(53400640-53400712)
chr4 (155-200)||(9962855-9962900)
[»] chr7 (3 HSPs)
chr7 (113-250)||(7346473-7346613)
chr7 (15-87)||(7346812-7346884)
chr7 (86-123)||(7346619-7346656)
[»] chr8 (1 HSPs)
chr8 (15-87)||(36519417-36519486)


Alignment Details
Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 109 - 250
Target Start/End: Original strand, 53400896 - 53401037
Alignment:
Q  109 tcaaaatcgaaatgagattgttgctttggtgcgacggcggagtcgacgggaaatgatggacgtttacggcggaatcagtcgttggaggtggtagttttgg 208  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||    
T  53400896 tcaaaatcgaaatgagattgttgctttggtgcgacgacggagtcgacgggaaatgatggacgtttacggcggaatcagtcgttggaggtggtggttccgg 53400995  T
Q  209 tgaattttttaacgtcacttatctaataccttcacatctctg 250  Q
     |||||||||||||||||||||||||||||||||||||||||    
T  53400996 cgaattttttaacgtcacttatctaataccttcacatctctg 53401037  T

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Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 53400640 - 53400712
Alignment:
Q  15 gtaataacataggatattagtgtagtttcttcttttatctacaaatgttgatattatctgtcgatattactat 87  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53400640 gtaataaaataggatattagtgtagtttcttcttttatctacaaatgttgatattatctgtcgatattactat 53400712  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 200
Target Start/End: Complemental strand, 9962900 - 9962855
Alignment:
Q  155 cgggaaatgatggacgtttacggcggaatcagtcgttggaggtggt 200  Q
    ||||||||||||| ||| ||||||||||||||||| ||||||||||    
T  9962900 cgggaaatgatggccgtctacggcggaatcagtcgatggaggtggt 9962855  T

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Target: chr7 (Bit Score: 95; Significance: 1e-46; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 113 - 250
Target Start/End: Complemental strand, 7346613 - 7346473
Alignment:
Q  113 aatcgaaatgagattgttgctttggt---gcgacggcggagtcgacgggaaatgatggacgtttacggcggaatcagtcgttggaggtggtagttttggt 209  Q
    |||||||||||||||||||||||  |   || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||     
T  7346613 aatcgaaatgagattgttgctttttttatgcaacggcagagtcgacgggaaatgatggacgtttacggcggaatcagtcgttggaggtggtggttccggc 7346514  T
Q  210 gaattttttaacgtcacttatctaataccttcacatctctg 250  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  7346513 gaattttttaacgtcacttatctaataccttcacatctctg 7346473  T

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Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 7346884 - 7346812
Alignment:
Q  15 gtaataacataggatattagtgtagtttcttcttttatctacaaatgttgatattatctgtcgatattactat 87  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7346884 gtaataacataggatattagtgtagtttcttcttttatctacaaatgttgatattatctgtcgatattactat 7346812  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 123
Target Start/End: Complemental strand, 7346656 - 7346619
Alignment:
Q  86 attgaaaatcatcaggaagaaactcaaaatcgaaatga 123  Q
    |||||||||||||||||||||| |||||||||||||||    
T  7346656 attgaaaatcatcaggaagaaattcaaaatcgaaatga 7346619  T

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Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 36519417 - 36519486
Alignment:
Q  15 gtaataacataggatattagtgtagtttcttcttttatctacaaatgttgatattatctgtcgatattactat 87  Q
    ||||||||||||||||||| ||||||||||   ||||||| |||||||||||||||||||| |||||||||||    
T  36519417 gtaataacataggatattactgtagtttct---tttatctgcaaatgttgatattatctgttgatattactat 36519486  T

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