View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5049_low_7 (Length: 218)
Name: NF5049_low_7
Description: NF5049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5049_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 72; Significance: 6e-33; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 129 - 200
Target Start/End: Complemental strand, 38791788 - 38791717
Alignment:
| Q |
129 |
aatctgtgctgtatattttgtactactgctacataatgcaaagcaatgttgattcttatctaaatactaaat |
200 |
Q |
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| T |
38791788 |
aatctgtgctgtatattttgtactactgctacataatgcaaagcaatgttgattcttatctaaatactaaat |
38791717 |
T |
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Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 38791907 - 38791860
Alignment:
| Q |
16 |
atgaaaatgaaagggttactttcgtggacctagagaaaataatgttca |
63 |
Q |
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| T |
38791907 |
atgaaaatgaaagggttactttcgtggacctagagaaaataatgttca |
38791860 |
T |
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