View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5050-Insertion-1 (Length: 446)
Name: NF5050-Insertion-1
Description: NF5050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5050-Insertion-1 |
 | |
|
| [»] chr3 (4 HSPs) |
| |
|
| [»] scaffold0294 (1 HSPs) |
| | |
|
| [»] scaffold1476 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 411; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 8 - 446
Target Start/End: Original strand, 47985268 - 47985706
Alignment:
| Q |
8 |
aagtcatcagtggactcctcttcaatagagatccttttgccaatgtattcactatcatcactgctacaatcaatgatattcaggtctggtaaatgataca |
107 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47985268 |
aagtcatcgatggactcctcttcagtagagatccttttgccaatgcattcactatcatcactgctacaatcaatgatattcaggtctggtaaatgataca |
47985367 |
T |
|
| Q |
108 |
gatcaatagttttgccaattggattatcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgtt |
207 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47985368 |
gatcaatagttttgccaattgaattatcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgtt |
47985467 |
T |
|
| Q |
208 |
accgggttctatacttgatactactctctccccctcctcatctccaaaggagattaatgtctcactcttatagagttgaacgatggctcttgtgtgattt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
47985468 |
accgggttctatacttgatactactctctccccctcctcatctccaaaggagattaatgtctcactcttatagagttgaatgatggctcttgtgtgattt |
47985567 |
T |
|
| Q |
308 |
atcactaacacgtttttaaggccatctgatgttatgtcatctgaggttgaagtatagacaatgcacatcattgtctttaagttatgcctttccacttgag |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47985568 |
atcactaacacgtttttaaggccatctgatgttatgtcatctgaggttgaagtatagacaatgcacatcattgtctttaagttatgcctttccacttgag |
47985667 |
T |
|
| Q |
408 |
ggacttcaaaagttacccaagaaccttcagaattaaagg |
446 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
47985668 |
ggacttcaaaagttaccgaagaaccttcagaattaaagg |
47985706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 8 - 446
Target Start/End: Original strand, 48003842 - 48004280
Alignment:
| Q |
8 |
aagtcatcagtggactcctcttcaatagagatccttttgccaatgtattcactatcatcactgctacaatcaatgatattcaggtctggtaaatgataca |
107 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48003842 |
aagtcatcgatggactcctcttcagtagagatccttttgccaatgcattcactatcatcactgctacaatcaatgatattcaggtctggtaaatgataca |
48003941 |
T |
|
| Q |
108 |
gatcaatagttttgccaattggattatcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgtt |
207 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48003942 |
gatcaatagttttgccaattgaattatcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgtt |
48004041 |
T |
|
| Q |
208 |
accgggttctatacttgatactactctctccccctcctcatctccaaaggagattaatgtctcactcttatagagttgaacgatggctcttgtgtgattt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
48004042 |
accgggttctatacttgatactactctctccccctcctcatctccaaaggagattaatgtctcactcttatagagttgaatgatggctcttgtgtgattt |
48004141 |
T |
|
| Q |
308 |
atcactaacacgtttttaaggccatctgatgttatgtcatctgaggttgaagtatagacaatgcacatcattgtctttaagttatgcctttccacttgag |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48004142 |
atcactaacacgtttttaaggccatctgatgttatgtcatctgaggttgaagtatagacaatgcacatcattgtctttaagttatgcctttccacttgag |
48004241 |
T |
|
| Q |
408 |
ggacttcaaaagttacccaagaaccttcagaattaaagg |
446 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
48004242 |
ggacttcaaaagttaccgaagaaccttcagaattaaagg |
48004280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 8 - 446
Target Start/End: Original strand, 47994555 - 47994993
Alignment:
| Q |
8 |
aagtcatcagtggactcctcttcaatagagatccttttgccaatgtattcactatcatcactgctacaatcaatgatattcaggtctggtaaatgataca |
107 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47994555 |
aagtcatcgatggactcctcttcagtagagatccttttgccaatgcattcactatcatcactgctacaatcaatgatattcaggtctggtaaatgataca |
47994654 |
T |
|
| Q |
108 |
gatcaatagttttgccaattggattatcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgtt |
207 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47994655 |
gatcaatagttttgccaattgaattatcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgtt |
47994754 |
T |
|
| Q |
208 |
accgggttctatacttgatactactctctccccctcctcatctccaaaggagattaatgtctcactcttatagagttgaacgatggctcttgtgtgattt |
307 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
47994755 |
accggattctatacttgatactactctctccccctcctcatctccaaaggagattaatgtctcactcttatagagttgaatgatggctcttgtgtgattt |
47994854 |
T |
|
| Q |
308 |
atcactaacacgtttttaaggccatctgatgttatgtcatctgaggttgaagtatagacaatgcacatcattgtctttaagttatgcctttccacttgag |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47994855 |
atcactaacacgtttttaaggccatctgatgttatgtcatctgaggttgaagtatagacaatgcacatcattgtctttaagttatgcctttccacttgag |
47994954 |
T |
|
| Q |
408 |
ggacttcaaaagttacccaagaaccttcagaattaaagg |
446 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
47994955 |
ggacttcaaaagttaccgaagaaccttcagaattaaagg |
47994993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 8 - 446
Target Start/End: Original strand, 48013127 - 48013565
Alignment:
| Q |
8 |
aagtcatcagtggactcctcttcaatagagatccttttgccaatgtattcactatcatcactgctacaatcaatgatattcaggtctggtaaatgataca |
107 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48013127 |
aagtcatcgatggactcctcttcagtagagatccttttgccaatgcattcactatcatcactgctacaatcaatgatattcaggtctggtaaatgataca |
48013226 |
T |
|
| Q |
108 |
gatcaatagttttgccaattggattatcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgtt |
207 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48013227 |
gatcaatagttttgccaattgaattatcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgtt |
48013326 |
T |
|
| Q |
208 |
accgggttctatacttgatactactctctccccctcctcatctccaaaggagattaatgtctcactcttatagagttgaacgatggctcttgtgtgattt |
307 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
48013327 |
accggattctatacttgatactactctctccccctcctcatctccaaaggagattaatgtctcactcttatagagttgaatgatggctcttgtgtgattt |
48013426 |
T |
|
| Q |
308 |
atcactaacacgtttttaaggccatctgatgttatgtcatctgaggttgaagtatagacaatgcacatcattgtctttaagttatgcctttccacttgag |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48013427 |
atcactaacacgtttttaaggccatctgatgttatgtcatctgaggttgaagtatagacaatgcacatcattgtctttaagttatgcctttccacttgag |
48013526 |
T |
|
| Q |
408 |
ggacttcaaaagttacccaagaaccttcagaattaaagg |
446 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
48013527 |
ggacttcaaaagttaccgaagaaccttcagaattaaagg |
48013565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 163; Significance: 7e-87; HSPs: 28)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 137 - 435
Target Start/End: Original strand, 5100822 - 5101120
Alignment:
| Q |
137 |
tatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactactctct |
236 |
Q |
| |
|
||||| |||||||||||| || | ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5100822 |
tatacgagataaactgctgtctttttcacaatgaaactgttctcaaaaacaacaacgacctccactttgttaccgggttctatacttgatactaccctca |
5100921 |
T |
|
| Q |
237 |
ccccctcctcatctccaaaggagattaatgtctcactcttatagagttgaacgatggctcttgtgtgatttatcactaacacgtttttaaggccatctga |
336 |
Q |
| |
|
||||||||||| ||||||||| ||||| ||| ||||||||||| |||| | |||| |||||| |||| |||||||||| |||||||||||| ||| |
|
|
| T |
5100922 |
gagcctcctcatcttcaaaggagactaatgcctcgctcttatagagctgaatggtggcctttgtgtaatttttcactaacacatttttaaggccacttga |
5101021 |
T |
|
| Q |
337 |
tgttatgtcatctgaggttgaagtatagacaatgcacatcattgtctttaagttatgcctttccacttgagggacttcaaaagttacccaagaaccttc |
435 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
5101022 |
tgttatgttatctggggttgaagtatagacaatgcacatcattgtcttcaagttacgcccttccacttgagggacttctaaagttacagaagaaccttc |
5101120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 137 - 435
Target Start/End: Original strand, 5135923 - 5136221
Alignment:
| Q |
137 |
tatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactactctct |
236 |
Q |
| |
|
||||| |||||||||||| || | ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5135923 |
tatacgagataaactgctgtctttttcacaatgaaactgttctcaaaaacaacaacgacctccactttgttaccgggttctatacttgatactaccctca |
5136022 |
T |
|
| Q |
237 |
ccccctcctcatctccaaaggagattaatgtctcactcttatagagttgaacgatggctcttgtgtgatttatcactaacacgtttttaaggccatctga |
336 |
Q |
| |
|
||||||||||| |||||||| ||||| || ||||| ||||| |||| | |||| |||||| |||| | || ||||| |||||||||||| ||| |
|
|
| T |
5136023 |
gagcctcctcatcttcaaaggaggctaatgcttcgctcttgtagagctgaatggtggcctttgtgtaattttttaccaacacatttttaaggccacttga |
5136122 |
T |
|
| Q |
337 |
tgttatgtcatctgaggttgaagtatagacaatgcacatcattgtctttaagttatgcctttccacttgagggacttcaaaagttacccaagaaccttc |
435 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
5136123 |
tgttatgttatctggggttgaagtatagacaatgcacatcattgtcttcaagttacgcccttccacttgagggacttctaaagttacagaagaaccttc |
5136221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 133 - 446
Target Start/End: Complemental strand, 5098506 - 5098193
Alignment:
| Q |
133 |
atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactact |
232 |
Q |
| |
|
||||||||| |||||||||||| || | ||||||||||||| ||||| |||||||||| ||||||||||||||||| |||||||||||||||| ||| |
|
|
| T |
5098506 |
atcatataccagataaactgctgtctttttcacaatgaaactgttctcgaaaacaacaatgacctccactttgttaccaggttctatacttgatattacc |
5098407 |
T |
|
| Q |
233 |
ctctccccctcctcatctccaaaggagattaatgtctcactcttatagagttgaacgatggctcttgtgtgatttatcactaacacgtttttaaggccat |
332 |
Q |
| |
|
|||| | |||||||||| ||||||||| |||| ||||||||||||||| |||| | |||| ||||||| ||| ||||||||| ||||||||||||| |
|
|
| T |
5098406 |
ctctggctctcctcatcttcaaaggagaccaatgcctcactcttatagagctgaatggtggcctttgtgtggtttttcactaacatgtttttaaggccac |
5098307 |
T |
|
| Q |
333 |
ctgatgttatgtcatctgaggttgaagtatagacaatgcacatcattgtctttaagttatgcctttccacttgagggacttcaaaagttacccaagaacc |
432 |
Q |
| |
|
|||| | |||| | ||| |||||||||||||||||||||||||||||| || ||| || | | ||||||||| || |||| |||||||||| ||||||| |
|
|
| T |
5098306 |
ttgatatcatgttagctggggttgaagtatagacaatgcacatcattgttttcaagctacggccttccacttggggaacttgaaaagttaccgaagaacc |
5098207 |
T |
|
| Q |
433 |
ttcagaattaaagg |
446 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
5098206 |
ttcagaatgaaagg |
5098193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 113 - 435
Target Start/End: Original strand, 5126609 - 5126934
Alignment:
| Q |
113 |
atagttttgccaattggattatcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgg |
212 |
Q |
| |
|
||||||| |||||||| | |||||||| |||||||| ||| || |||||||||||||||| |||| |||||||||||| | ||| ||||||||||| | |
|
|
| T |
5126609 |
atagtttcaccaattggttcatcatatatgagataaacagctgtcttcttcacaatgaaaccgttcttaaaaacaacaacaatctcaactttgttaccag |
5126708 |
T |
|
| Q |
213 |
gttctatacttgatactactctctccccctcctcatctccaaaggagattaatgtctcactcttatagagttgaacgatggctcttgtgtgatttatcac |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||| | || ||| |||||||||||||||| | |||| | |||| |||| |||| |
|
|
| T |
5126709 |
cttctatacttgatactactctctccccctcctcatcttcaaaggagactgctgcctctctcttatagagttgaatggtggccttcgtgtaatttttcac |
5126808 |
T |
|
| Q |
313 |
taacacgtttttaaggccatctgatgttatgtcatctgaggttgaagtatagacaatgcacatcat---tgtctttaagttatgcctttccacttgaggg |
409 |
Q |
| |
|
|||| | || ||||||||||||||||||||| ||| ||||||||| |||||||||||| ||||| | |||| || || ||| || ||||||||| |
|
|
| T |
5126809 |
caacaagcttgtaaggccatctgatgttatgttatccaaggttgaagaatagacaatgcatatcattactttcttcaacgtacgccctttcacttgaggt |
5126908 |
T |
|
| Q |
410 |
acttcaaaagttacccaagaaccttc |
435 |
Q |
| |
|
||||||||||||||| |||||||||| |
|
|
| T |
5126909 |
acttcaaaagttaccgaagaaccttc |
5126934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 92 - 438
Target Start/End: Original strand, 5352822 - 5353168
Alignment:
| Q |
92 |
tctggtaaatgatacagatcaatagttttgccaattggattatcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaa |
191 |
Q |
| |
|
|||||||||||||| | ||| | ||| || |||||||| ||||||||||| ||||||| || | || ||||||| ||||||| |||||| ||||||| || |
|
|
| T |
5352822 |
tctggtaaatgatataaatccaaagtctttccaattggtttatcatataccagataaattgttgtcttcttcacgatgaaacaattctcgaaaacaataa |
5352921 |
T |
|
| Q |
192 |
ccacctccactttgttaccgggttctatacttgatactactctctccccctcctcatctccaaaggagattaatgtctcactcttatagagttgaacgat |
291 |
Q |
| |
|
||||||| ||||||| ||| || || ||||||||||||||||||| ||||||||||||| ||||||| ||||||| ||| |||||||| || |||| | | |
|
|
| T |
5352922 |
ccacctctactttgtcaccaggatccatacttgatactactctctgcccctcctcatcttcaaaggaaattaatgcctctctcttataaagctgaatggt |
5353021 |
T |
|
| Q |
292 |
ggctcttgtgtgatttatcactaacacgtttttaaggccatctgatgttatgtcatctgaggttgaagtatagacaatgcacatcattgtctttaagtta |
391 |
Q |
| |
|
|| |||||| |||| | | ||||| ||||||||||||| ||| ||||||| || | |||||| ||||||| |||||||||||||||||| |||||| |
|
|
| T |
5353022 |
agcctttgtgtaattttttagcaacacatttttaaggccatatgaagttatgttattttgggttgacgtatagataatgcacatcattgtcttcaagtta |
5353121 |
T |
|
| Q |
392 |
tgcctttccacttgagggacttcaaaagttacccaagaaccttcaga |
438 |
Q |
| |
|
||| |||||| ||||||| | ||||||||| ||||||||||||| |
|
|
| T |
5353122 |
cgcccttccaccagagggacatgaaaagttacagaagaaccttcaga |
5353168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 133 - 439
Target Start/End: Complemental strand, 5398341 - 5398035
Alignment:
| Q |
133 |
atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactact |
232 |
Q |
| |
|
|||||||||||||||||||| | || |||||||||||||| ||||||| ||||||| || ||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
5398341 |
atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcgaaaacaaagacaacctcaactttgttaccaggttctatacttgatactacc |
5398242 |
T |
|
| Q |
233 |
ctctccccctcctcatctccaaaggagattaatgtctcactcttatagagttgaacgatggctcttgtgtgatttatcactaacacgtttttaaggccat |
332 |
Q |
| |
|
|| | |||||| |||| | ||||||||| ||| | ||||||||||||||| |||| | |||| |||||| |||||||||||||| ||||||||||||| |
|
|
| T |
5398241 |
ctttgcccctcttcatgttcaaaggagaataacgcctcactcttatagagctgaatggtggcctttgtgtaatttatcactaacatgtttttaaggccac |
5398142 |
T |
|
| Q |
333 |
ctgatgttatgtcatctgaggttgaagtatagacaatgcacatcattgtctttaagttatgcctttccacttgagggacttcaaaagttacccaagaacc |
432 |
Q |
| |
|
||||||| | ||| ||||||||||| |||||||||||||||||||| |||||| ||| |||||| ||||| ||||||||||||| ||||||| |
|
|
| T |
5398141 |
tagatgttacattatccagagttgaagtatacacaatgcacatcattgtcttcaagttacgcccttccacatgaggaacttcaaaagttaaagaagaacc |
5398042 |
T |
|
| Q |
433 |
ttcagaa |
439 |
Q |
| |
|
|||||| |
|
|
| T |
5398041 |
ctcagaa |
5398035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 133 - 446
Target Start/End: Complemental strand, 5448904 - 5448591
Alignment:
| Q |
133 |
atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactact |
232 |
Q |
| |
|
||||||||| ||||| ||| || || ||| |||| ||||| ||||||| ||||||| ||| | |||||||||||| |||||||||||||||||||||| |
|
|
| T |
5448904 |
atcatataccagatatactactgtcttctccacagtgaaatcattctcgaaaacaaaaacgatctccactttgtttccgggttctatacttgatactaac |
5448805 |
T |
|
| Q |
233 |
ctctccccctcctcatctccaaaggagattaatgtctcactcttatagagttgaacgatggctcttgtgtgatttatcactaacacgtttttaaggccat |
332 |
Q |
| |
|
|||| |||||||| |||| ||||||| | |||||||||||||||||||| ||||| | | || |||||| |||| |||| ||||| |||||||||||| |
|
|
| T |
5448804 |
ctctgcccctccttatcttcaaaggaaactaatgtctcactcttatagatttgaatggtagcctttgtgtaatttttcaccaacacatttttaaggccac |
5448705 |
T |
|
| Q |
333 |
ctgatgttatgtcatctgaggttgaagtatagacaatgcacatcattgtctttaagttatgcctttccacttgagggacttcaaaagttacccaagaacc |
432 |
Q |
| |
|
||||||| | ||||| |||||||||||||||||||||||||| || | | || | | || ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
5448704 |
tagatgttacattatctggggttgaagtatagacaatgcacatcaatgacgtcaattgacgctcttccacttgagggacttcaaaagttacagaagaacc |
5448605 |
T |
|
| Q |
433 |
ttcagaattaaagg |
446 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
5448604 |
ttcagaattaaagg |
5448591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 133 - 417
Target Start/End: Complemental strand, 5351695 - 5351411
Alignment:
| Q |
133 |
atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactact |
232 |
Q |
| |
|
||||||||| ||||||||| || || | ||||||||| || ||||||| ||||||| || |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5351695 |
atcatatacgagataaactactgtctttttcacaatgcaatcattctcgaaaacaaaaatgacctccactttgttactgggttctatacttgatactaac |
5351596 |
T |
|
| Q |
233 |
ctctccccctcctcatctccaaaggagattaatgtctcactcttatagagttgaacgatggctcttgtgtgatttatcactaacacgtttttaaggccat |
332 |
Q |
| |
|
|||| ||||||||||||| ||||||| | ||||| ||||||||||||||| ||| | |||| |||||| |||| ||||||||| ||||||||||||| |
|
|
| T |
5351595 |
ctctgcccctcctcatcttcaaaggaaactaatgcctcactcttatagagccgaatggtggcctttgtgtaatttttcactaacatgtttttaaggccac |
5351496 |
T |
|
| Q |
333 |
ctgatgttatgtcatctgaggttgaagtatagacaatgcacatcattgtctttaagttatgcctttccacttgagggacttcaaa |
417 |
Q |
| |
|
|||||||| || | | | ||||||||||||||| ||||||||||||||||| |||| | ||| |||||||||||| |||||||| |
|
|
| T |
5351495 |
ttgatgttacgttaccaggggttgaagtatagactatgcacatcattgtcttcaagtcacgcccttccacttgaggaacttcaaa |
5351411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 117 - 439
Target Start/End: Complemental strand, 5427211 - 5426889
Alignment:
| Q |
117 |
ttttgccaattggattatcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttc |
216 |
Q |
| |
|
||||||||||||| | ||||||||| ||||||||| || || || |||||| ||||| ||||||||||||| ||| ||||||| ||||||||| ||||| |
|
|
| T |
5427211 |
ttttgccaattggttcatcatatacgagataaactactgtcttcgtcacaacgaaactgttctcaaaaacaaaaacgacctccattttgttaccaggttc |
5427112 |
T |
|
| Q |
217 |
tatacttgatactactctctccccctcctcatctccaaaggagattaatgtctcactcttatagagttgaacgatggctcttgtgtgatttatcactaac |
316 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |||| || | |||| |||||||||||| || |||| |||||| |||||| |||| ||| |||| |
|
|
| T |
5427111 |
tatacttgatactactctttccccctcctcatcttcaaatgacactaatacctcactcttataaagctgaatgatggcctttgtgtaatttttcaataac |
5427012 |
T |
|
| Q |
317 |
acgtttttaaggccatctgatgttatgtcatctgaggttgaagtatagacaatgcacatcattgtctttaagttatgcctttccacttgagggacttcaa |
416 |
Q |
| |
|
| | ||||||||||| |||| ||| | | | | ||||||||||||||| |||||||| |||||||| | |||| ||| ||||||||| || |||| || |
|
|
| T |
5427011 |
atgattttaaggccacttgatattacattaccaggggttgaagtatagactatgcacataattgtcttcaggttacgcccttccacttgtggaacttgaa |
5426912 |
T |
|
| Q |
417 |
aagttacccaagaaccttcagaa |
439 |
Q |
| |
|
||||||| |||||||||||||| |
|
|
| T |
5426911 |
aagttacagaagaaccttcagaa |
5426889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 133 - 446
Target Start/End: Original strand, 5180774 - 5181087
Alignment:
| Q |
133 |
atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactact |
232 |
Q |
| |
|
||||||||| ||||||| |||| || ||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5180774 |
atcatataccagataaattgctgtcttcttcacaatgaaacttttctcaaaaacaaaaacgacctccactttgttaccgggttctatgcttgatactacc |
5180873 |
T |
|
| Q |
233 |
ctctccccctcctcatctccaaaggagattaatgtctcactcttatagagttgaacgatggctcttgtgtgatttatcactaacacgtttttaaggccat |
332 |
Q |
| |
|
|||| ||||| |||||| |||| |||| ||| || |||||||||||||| |||| | | || |||||| |||| | ||||||| ||||||||||||| |
|
|
| T |
5180874 |
ctctgaccctcttcatcttcaaaagagactaacgtatcactcttatagagctgaatggtagcctttgtgtaatttttaactaacatgtttttaaggccac |
5180973 |
T |
|
| Q |
333 |
ctgatgttatgtcatctgaggttgaagtatagacaatgcacatcattgtctttaagttatgcctttccacttgagggacttcaaaagttacccaagaacc |
432 |
Q |
| |
|
|||||||| | || || |||||| ||||||||| | |||||||||||| |||||| | | |||||| |||||||||||||||||| ||||||| |
|
|
| T |
5180974 |
ttgatgttacattatgtggagttgaattatagacaacgagcatcattgtcttcaagttacgtccttccaccaaagggacttcaaaagttacagaagaacc |
5181073 |
T |
|
| Q |
433 |
ttcagaattaaagg |
446 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
5181074 |
ttcagaattaaagg |
5181087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 133 - 446
Target Start/End: Complemental strand, 5439306 - 5438993
Alignment:
| Q |
133 |
atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactact |
232 |
Q |
| |
|
||||||||| |||||| ||||| || | || |||||||| |||||| ||||||| ||| ||||||||||||||||| ||||||||||||||| || |
|
|
| T |
5439306 |
atcatatacgagataagctgctgtctttttggcaatgaaatcattcttgaaaacaaaaacaacctccactttgttaccaggttctatacttgattttaac |
5439207 |
T |
|
| Q |
233 |
ctctccccctcctcatctccaaaggagattaatgtctcactcttatagagttgaacgatggctcttgtgtgatttatcactaacacgtttttaaggccat |
332 |
Q |
| |
|
|||| ||||||||||||| |||| |||| || | ||||||||||||||| |||| | |||| |||||||||||||||| || || ||| |||||| || |
|
|
| T |
5439206 |
ctctgcccctcctcatcttcaaaagagactacagcctcactcttatagagctgaatggtggcctttgtgtgatttatcaccaatacatttataaggctat |
5439107 |
T |
|
| Q |
333 |
ctgatgttatgtcatctgaggttgaagtatagacaatgcacatcattgtctttaagttatgcctttccacttgagggacttcaaaagttacccaagaacc |
432 |
Q |
| |
|
|||||||||||| ||| | ||||||| ||||||||||||||||| || | | || ||| ||| ||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
5439106 |
ctgatgttatgttatccggagttgaagaatagacaatgcacatcaatgacatcaaattacgcccttccacttgagggacttgaaaagttacagaagaacc |
5439007 |
T |
|
| Q |
433 |
ttcagaattaaagg |
446 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
5439006 |
ttcagaattaaagg |
5438993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 137 - 442
Target Start/End: Original strand, 5156017 - 5156322
Alignment:
| Q |
137 |
tatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactactctct |
236 |
Q |
| |
|
|||||||||||||||| | || |||||||||||||| | |||| ||||||| | ||||||||||||||||| ||||||| |||||||||||| |||| |
|
|
| T |
5156017 |
tatacaagataaactgttgtcttcttcacaatgaaattaatctcgaaaacaaaatggacctccactttgttaccaggttctagacttgatactaccctct |
5156116 |
T |
|
| Q |
237 |
ccccctcctcatctccaaaggagattaatgtctcactcttatagagttgaacgatggctcttgtgtgatttatcactaacacgtttttaaggccatctga |
336 |
Q |
| |
|
|||||| |||||| |||||||| |||| |||||||||||| || |||| | |||| |||||| |||| ||| ||||| ||||||||||||| | |
|
|
| T |
5156117 |
gcccctcttcatcttcaaaggaggccaatgcctcactcttataaagctgaatggtggcctttgtgtaatttttcaataacatgtttttaaggccactaca |
5156216 |
T |
|
| Q |
337 |
tgttatgtcatctgaggttgaagtatagacaatgcacatcattgtctttaagttatgcctttccacttgagggacttcaaaagttacccaagaaccttca |
436 |
Q |
| |
|
||||| | ||||| ||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||| |||||||| | || ||||||||||| |
|
|
| T |
5156217 |
tgttacattatctggggttgaagtatagacaatgcacatcattgtcttcaagttacgcccttccacttgaggaacttcaaatttcacagaagaaccttca |
5156316 |
T |
|
| Q |
437 |
gaatta |
442 |
Q |
| |
|
|||||| |
|
|
| T |
5156317 |
gaatta |
5156322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 122 - 435
Target Start/End: Complemental strand, 5178045 - 5177729
Alignment:
| Q |
122 |
ccaattggattatcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatac |
221 |
Q |
| |
|
|||||||| | ||||||||| |||||||||| | | |||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
5178045 |
ccaattggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacaacaacaacctccactttgttacaaggttctatac |
5177946 |
T |
|
| Q |
222 |
ttgatactactctctccccctcctcatctccaaaggagattaatgtctcactcttatagagttgaacgatggctcttgtgtgatttatcactaacacgtt |
321 |
Q |
| |
|
||||||||||||||| ||||| |||||| |||||||| ||||| ||| |||||||| || |||| | ||||| |||||| ||| | || |||| ||| |
|
|
| T |
5177945 |
ttgatactactctctgaccctcttcatcttcaaaggaggctaatgcctctctcttataaagctgaatggtggcttttgtgtaattcttaaccaacaagtt |
5177846 |
T |
|
| Q |
322 |
tttaaggccatctgatgttatgtcatctgaggttgaagtatagacaatgca---catcattgtctttaagttatgcctttccacttgagggacttcaaaa |
418 |
Q |
| |
|
| |||||||| ||||||||| | ||| |||||||| |||| ||||||| ||||||||||||||| | || ||||||||||||||||||||| |
|
|
| T |
5177845 |
tgcaaggccatttgatgttatattatccagggttgaagaatagtcaatgcatatcatcattgtctttaaagtgcacccttccacttgagggacttcaaac |
5177746 |
T |
|
| Q |
419 |
gttacccaagaaccttc |
435 |
Q |
| |
|
||||| |||||||||| |
|
|
| T |
5177745 |
attaccgaagaaccttc |
5177729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 122 - 435
Target Start/End: Complemental strand, 5279870 - 5279554
Alignment:
| Q |
122 |
ccaattggattatcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatac |
221 |
Q |
| |
|
|||||||| | ||||||||| |||||||||| | | |||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
5279870 |
ccaattggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacaacaacaacctccactttgttacaaggttctatac |
5279771 |
T |
|
| Q |
222 |
ttgatactactctctccccctcctcatctccaaaggagattaatgtctcactcttatagagttgaacgatggctcttgtgtgatttatcactaacacgtt |
321 |
Q |
| |
|
||||||||||||||| ||||| |||||| |||||||| ||||| ||| |||||||| || |||| | ||||| |||||| ||| |||| |||| ||| |
|
|
| T |
5279770 |
ttgatactactctctgaccctcttcatcttcaaaggaggctaatgcctctctcttataaagctgaatggtggcttttgtgtaattcttcaccaacaagtt |
5279671 |
T |
|
| Q |
322 |
tttaaggccatctgatgttatgtcatctgaggttgaagtatagacaatgcacatcat---tgtctttaagttatgcctttccacttgagggacttcaaaa |
418 |
Q |
| |
|
| |||||||| ||||||||| | ||| |||||||| |||| ||||||| ||||| ||||||||| | || ||||||||||||||||||||| |
|
|
| T |
5279670 |
tgcaaggccatttgatgttatattatccagggttgaagaatagtcaatgcatatcatcaatgtctttaaagtgcacccttccacttgagggacttcaaac |
5279571 |
T |
|
| Q |
419 |
gttacccaagaaccttc |
435 |
Q |
| |
|
||||| |||||||||| |
|
|
| T |
5279570 |
attaccgaagaaccttc |
5279554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 123 - 435
Target Start/End: Original strand, 5065439 - 5065754
Alignment:
| Q |
123 |
caattggattatcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatact |
222 |
Q |
| |
|
||||||| | |||||||| |||||||||| | |||||||||||| |||||| ||||||||||||||||| | |||||||| || || ||||| ||||| |
|
|
| T |
5065439 |
caattggttcatcatatatgagataaactgttgtcctcttcacaacgaaaccgttctcaaaaacaacaacaaaatccactttatttccaggttcaatact |
5065538 |
T |
|
| Q |
223 |
tgatactactctctccccctcctcatctccaaaggagattaatgtctcactcttatagagttgaacgatggctcttgtgtgatttatcactaacacgttt |
322 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||||||| | ||| ||||||||||| |||| | ||| | |||||| |||| | || |||| ||| |
|
|
| T |
5065539 |
tgatactactctctgcccctcctcatcttcaaaggagattaacgcctctctcttatagagctgaatggtggattttgtgtaattttttaccaacaaattt |
5065638 |
T |
|
| Q |
323 |
ttaaggccatctgatgttatgtcatctgaggttgaagtatagacaatgcacatcatt---gtctttaagttatgcctttccacttgagggacttcaaaag |
419 |
Q |
| |
|
| |||||||| |||| ||||| ||| | |||||||| |||||||||||| |||||| ||||| || || ||| || || ||||||||||||||||| |
|
|
| T |
5065639 |
gtgaggccatcagatgctatgttatccggggttgaagaatagacaatgcatatcattattgtcttcaacatacgccctttcatttgagggacttcaaaag |
5065738 |
T |
|
| Q |
420 |
ttacccaagaaccttc |
435 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
5065739 |
ttacagaagaaccttc |
5065754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 133 - 436
Target Start/End: Original strand, 23127310 - 23127613
Alignment:
| Q |
133 |
atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactact |
232 |
Q |
| |
|
|||||||||||||||||||| | | ||||||||| |||||||||||||||||| ||||| ||||||| ||||||||| |||||| ||||||||||| |
|
|
| T |
23127310 |
atcatatacaagataaactgttgtattcttcacaacgaaaccattctcaaaaacgacaacaacctccattttgttaccaggttctgcacttgatactaag |
23127409 |
T |
|
| Q |
233 |
ctctccccctcctcatctccaaaggagattaatgtctcactcttatagagttgaacgatggctcttgtgtgatttatcactaacacgtttttaaggccat |
332 |
Q |
| |
|
|||| ||| ||||||||| | || |||| ||||||||| |||||||||| |||| | | | |||||| |||| | || ||||||||||||| ||||| |
|
|
| T |
23127410 |
ctcttcccttcctcatcttcgaacgagactaatgtctctctcttatagatctgaatggtaccctttgtgtaattttttaccaacacgtttttaacgccat |
23127509 |
T |
|
| Q |
333 |
ctgatgttatgtcatctgaggttgaagtatagacaatgcacatcattgtctttaagttatgcctttccacttgagggacttcaaaagttacccaagaacc |
432 |
Q |
| |
|
| || || |||| ||||| ||||||||||| ||||| ||||| |||||||| | |||||||| |||||||||||| |||||||| |||| ||||||| |
|
|
| T |
23127510 |
ccgaggtaatgttatctggggttgaagtattgacaacacacattattgtcttcacgttatgcccttccacttgaggagcttcaaaacttacagaagaacc |
23127609 |
T |
|
| Q |
433 |
ttca |
436 |
Q |
| |
|
|||| |
|
|
| T |
23127610 |
ttca |
23127613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 124 - 435
Target Start/End: Original strand, 5688894 - 5689208
Alignment:
| Q |
124 |
aattggattatcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatactt |
223 |
Q |
| |
|
|||||| | ||||||||| |||||||||| | | |||||||||||||||| |||||||||||| ||| |||||||||||||||| |||||||||||| |
|
|
| T |
5688894 |
aattggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacagaaacaacctccactttgttacaaggttctatactt |
5688993 |
T |
|
| Q |
224 |
gatactactctctccccctcctcatctccaaaggagattaatgtctcactcttatagagttgaacgatggctcttgtgtgatttatcactaacacgtttt |
323 |
Q |
| |
|
||||||||||||| ||||| |||||| ||||||||| ||||| ||| |||||||| || |||| | ||||| |||||| ||| |||| |||| |||| |
|
|
| T |
5688994 |
gatactactctctgtccctcttcatcttcaaaggagactaatgcctcgctcttataaagctgaatggtggcttttgtgtaattcttcaccaacaagtttg |
5689093 |
T |
|
| Q |
324 |
taaggccatctgatgttatgtcatctgaggttgaagtatagacaatgca---catcattgtctttaagttatgcctttccacttgagggacttcaaaagt |
420 |
Q |
| |
|
|||||||| ||||||||||| ||| ||||| || |||| | ||||| ||||| ||||||||| | ||| ||||||||||||||||||||| | |
|
|
| T |
5689094 |
caaggccatttgatgttatgttatccagggttgtagaatagtcgatgcatatcatcaatgtctttaaagtgcgcccttccacttgagggacttcaaacat |
5689193 |
T |
|
| Q |
421 |
tacccaagaaccttc |
435 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
5689194 |
taccgaagaaccttc |
5689208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 120 - 440
Target Start/End: Original strand, 5242499 - 5242822
Alignment:
| Q |
120 |
tgccaattggattatcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctat |
219 |
Q |
| |
|
|||||||||| | ||||||||| ||||||||| || || ||||||||||||||| ||||||||||||| ||| ||||||||||||||||| |||||||| |
|
|
| T |
5242499 |
tgccaattggttcatcatatacgagataaactactgtcttcttcacaatgaaactgttctcaaaaacaaaaacgacctccactttgttaccaggttctat |
5242598 |
T |
|
| Q |
220 |
acttgatactactctctccccctcctcatctccaaaggagattaatgtctcactcttatagagttgaacgatggctcttgtgtgatttatcactaacacg |
319 |
Q |
| |
|
|||| ||||||||||| ||||| ||||||| |||||| | || || ||| ||||| ||||| |||| | |||| |||||| |||| ||||||||| | |
|
|
| T |
5242599 |
acttcatactactctcagccccttctcatcttcaaaggcggctactgcctctctcttgtagagctgaatggtggcctttgtgtaatttttcactaacaag |
5242698 |
T |
|
| Q |
320 |
tttttaaggccatctgatgttatgtcatctgaggttgaagtatagacaatgcacatc---attgtctttaagttatgcctttccacttgagggacttcaa |
416 |
Q |
| |
|
||| ||||||||| |||||||| ||| || ||||||| ||||||| || ||| |||||||| || | ||| |||||||||||||||||||| |
|
|
| T |
5242699 |
tttccaaggccatcagatgttatactatccgaagttgaagaatagacagcacatatcgttattgtcttcaacattcgcccttccacttgagggacttcaa |
5242798 |
T |
|
| Q |
417 |
aagttacccaagaaccttcagaat |
440 |
Q |
| |
|
|||| || ||||||||||||||| |
|
|
| T |
5242799 |
aagtaacagaagaaccttcagaat |
5242822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 159 - 442
Target Start/End: Complemental strand, 5334454 - 5334165
Alignment:
| Q |
159 |
tcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactactctctccccctcctcatctccaaagga |
258 |
Q |
| |
|
|||||| ||||||| ||||||| ||||||| ||| ||||||||||||||||| ||||||| || ||||||||| |||| |||||| |||||| ||| | |
|
|
| T |
5334454 |
tcttcaaaatgaaatcattctcgaaaacaaaaacgacctccactttgttaccaggttctagacatgatactaccctctacccctcttcatctttgaagaa |
5334355 |
T |
|
| Q |
259 |
gat-------taatgtctcactcttatagagttgaacgatggctcttgtgtgatttatcactaacacgtttttaaggccatctgatgttatgtcatctga |
351 |
Q |
| |
|
| | ||||| |||||||||||||||||||| | |||| |||||| |||||||||||||| ||||||||||||| ||||| || | ||||| |
|
|
| T |
5334354 |
gttagaagtctaatgcctcactcttatagagttgaatggtggcctttgtgtaatttatcactaacatgtttttaaggccacttgatg-tacattatctgg |
5334256 |
T |
|
| Q |
352 |
ggttgaagtatagacaatgcacatcattgtctttaagttatgcctttccacttgagggacttcaaaagttacccaagaaccttcagaatta |
442 |
Q |
| |
|
||||||| |||||| |||||||||||||||||| |||||| || |||||||||||| |||||||| | || ||||||||||||||||| |
|
|
| T |
5334255 |
ggttgaattatagaaaatgcacatcattgtcttcaagttacccccttccacttgaggaacttcaaatttcacagaagaaccttcagaatta |
5334165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 137 - 439
Target Start/End: Complemental strand, 5372388 - 5372086
Alignment:
| Q |
137 |
tatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactactctct |
236 |
Q |
| |
|
||||| ||||||| || | || |||||||||||||| ||||||| | ||||| | | ||||||||||||||| ||||||| |||||||||||| |||| |
|
|
| T |
5372388 |
tatacgagataaattgttgtcttcttcacaatgaaatcattctcgagaacaaaatggatctccactttgttaccaggttctagacttgatactaccctct |
5372289 |
T |
|
| Q |
237 |
ccccctcctcatctccaaaggagattaatgtctcactcttatagagttgaacgatggctcttgtgtgatttatcactaacacgtttttaaggccatctga |
336 |
Q |
| |
|
|||||| |||||| ||||||||| ||||| ||||||||||| || |||| | |||| |||||| |||| ||| ||||| ||||||||||||| || |
|
|
| T |
5372288 |
gcccctcttcatcttcaaaggagactaatgcttcactcttataaagctgaatggtggcctttgtgtaatttttcaataacatgtttttaaggccactaga |
5372189 |
T |
|
| Q |
337 |
tgttatgtcatctgaggttgaagtatagacaatgcacatcattgtctttaagttatgcctttccacttgagggacttcaaaagttacccaagaaccttca |
436 |
Q |
| |
|
||||| | ||| | ||||||||| ||||| ||||||| |||||||| |||||| ||| |||||||||||| |||||||| | || ||||||||||| |
|
|
| T |
5372188 |
tgttacattatccggagttgaagtacagacattgcacataattgtcttcaagttacgcccttccacttgaggaacttcaaatttcacagaagaaccttca |
5372089 |
T |
|
| Q |
437 |
gaa |
439 |
Q |
| |
|
||| |
|
|
| T |
5372088 |
gaa |
5372086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 133 - 441
Target Start/End: Complemental strand, 5346324 - 5346013
Alignment:
| Q |
133 |
atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactact |
232 |
Q |
| |
|
|||||||| ||||||| |||| || |||||||||||||||||||||||| |||||| || ||||||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
5346324 |
atcatatatgagataaattgctgtcttcttcacaatgaaaccattctcaataacaacgacaacctccactttgttaccaggttctatacttgatacaact |
5346225 |
T |
|
| Q |
233 |
ctctccccctcctcatctccaaaggagattaatgtctcactcttatagagttgaacgatggctcttgtgtgatttatcactaacacgtttttaaggccat |
332 |
Q |
| |
|
|||| |||||||||||| |||||| | || || ||| ||||| || || |||| | | || |||||| |||| |||| |||| |||| | ||||||| |
|
|
| T |
5346224 |
ctctggccctcctcatcttcaaaggcggctactgcctctctcttgtatagctgaatggtagcctttgtgtaatttttcaccaacaagtttctcaggccat |
5346125 |
T |
|
| Q |
333 |
ctgatgttatgtcatctgaggttgaagtatagacaatgcacatc---attgtctttaagttatgcctttccacttgagggacttcaaaagttacccaaga |
429 |
Q |
| |
|
| |||||||| | ||| || ||||||| |||||||| || ||| |||||||| || | ||| |||||||||||| ||||||||||| || |||| |
|
|
| T |
5346124 |
cagatgttatattatccgaagttgaagaatagacaacacatatcgttattgtcttcaacattcgcccttccacttgaggaacttcaaaagtaacagaaga |
5346025 |
T |
|
| Q |
430 |
accttcagaatt |
441 |
Q |
| |
|
|||||||||||| |
|
|
| T |
5346024 |
accttcagaatt |
5346013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 161 - 446
Target Start/End: Original strand, 5072710 - 5072995
Alignment:
| Q |
161 |
ttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactactctctccccctcctcatctccaaaggaga |
260 |
Q |
| |
|
|||||||||||| | ||||||| |||||| || |||||||||| |||||| || |||||||||||||||| |||||| ||||| |||||| ||||||| |
|
|
| T |
5072710 |
ttcacaatgaaatcgttctcaacaacaacgacaacctccacttggttaccaggctctatacttgatactaatctctcgccctcatcatctttgaaggaga |
5072809 |
T |
|
| Q |
261 |
ttaatgtctcactcttatagagttgaacgatggctcttgtgtgatttatcactaacacgtttttaaggccatctgatgttatgtcatctgaggttgaagt |
360 |
Q |
| |
|
||||| ||| |||||||| ||||||| | ||||| | |||| |||| |||| | || |||||||||||| |||||| || | || || | ||||| |
|
|
| T |
5072810 |
ctaatgcctctctcttatatagttgaatggtggctttagtgtaatttttcaccatcaagtttttaaggccgtctgatactacattatttggtggtgaaga |
5072909 |
T |
|
| Q |
361 |
atagacaatgcacatcattgtctttaagttatgcctttccacttgagggacttcaaaagttacccaagaaccttcagaattaaagg |
446 |
Q |
| |
|
|||||||| ||| ||||||||||| || | ||| ||||||||||||||||||||| ||||| || |||| || ||||||||| |
|
|
| T |
5072910 |
atagacaacgcatatcattgtcttcaatatgcgcccttccacttgagggacttcaaattttaccgaacaaccatcgtaattaaagg |
5072995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 133 - 442
Target Start/End: Complemental strand, 2939210 - 2938895
Alignment:
| Q |
133 |
atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactact |
232 |
Q |
| |
|
||||||||| ||||||| || | | ||||||||||| || ||||||| | ||||| | ||||||||||||||||| |||| || |||||||||||| |
|
|
| T |
2939210 |
atcatatacgagataaattgttgccttcttcacaatgcaatcattctcgataacaaaatggacctccactttgttaccaggttatagacttgatactacc |
2939111 |
T |
|
| Q |
233 |
ctctccccctcctcatc----tccaaaggagattaatgtctcactcttatagagttgaacgatggctcttgtgtgatttatcactaacacgtttttaagg |
328 |
Q |
| |
|
|||| ||| || ||||| | | ||||||| ||||| ||||||||||||||| |||| | |||| || | | |||| ||| || || |||||||||| |
|
|
| T |
2939110 |
ctctgcccttcttcatccatcttcgaaggagactaatgcctcactcttatagagctgaatggtggcctttatataatttttcaatatcatgtttttaagg |
2939011 |
T |
|
| Q |
329 |
ccatctgatgttatgtcatctgaggttgaagtata--gacaatgcacatcattgtctttaagttatgcctttccacttgagggacttcaaaagttaccca |
426 |
Q |
| |
|
||| ||||||| | ||||| |||| ||||||| ||||||||||||||||||||| |||||| ||| |||||||||||| |||||||| | || | |
|
|
| T |
2939010 |
ccactagatgttacattatctggggtttaagtatatagacaatgcacatcattgtcttcaagttacgcccttccacttgaggaacttcaaatttcacaga |
2938911 |
T |
|
| Q |
427 |
agaaccttcagaatta |
442 |
Q |
| |
|
||||| |||||||||| |
|
|
| T |
2938910 |
agaacattcagaatta |
2938895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 133 - 446
Target Start/End: Original strand, 5283224 - 5283525
Alignment:
| Q |
133 |
atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactact |
232 |
Q |
| |
|
||||||||| ||||||| |||| || ||||||||||||||| || |||||||||| | ||||||||||||||||| ||||| |||||||||| ||| |
|
|
| T |
5283224 |
atcatataccagataaattgctgtcttcttcacaatgaaactgttttcaaaaacaaatatgacctccactttgttacctggttcgatacttgatattacc |
5283323 |
T |
|
| Q |
233 |
ctctccccctcctcatctccaaaggagattaatgtctcactcttatagagttgaacgatggctcttgtgtgatttatcactaacacgtttttaaggccat |
332 |
Q |
| |
|
|||| || ||| || | ||||| || |||| ||||| ||||||||||| | | |||| |||||| |||| |||||||||||||| ||| || || |
|
|
| T |
5283324 |
ctctgccactc---attttcaaagtaggaaaatgcatcactattatagagttggatggtggcctttgtgtaatttttcactaacacgtttctaaagctat |
5283420 |
T |
|
| Q |
333 |
ctgatgttatgtcatctgaggttgaagtatagacaatgcacatcattgtctttaagttatgcctttccacttgagggacttcaaaagttacccaagaacc |
432 |
Q |
| |
|
| | | | | ||||||||||||||||||||||||||||| ||| |||||| || ||| ||||||||||| ||||||||||| ||||||| |
|
|
| T |
5283421 |
gt---------ttaccaggggttgaagtatagacaatgcacatcattgacttcaagttacacccttcaacttgagggacatcaaaagttacagaagaacc |
5283511 |
T |
|
| Q |
433 |
ttcagaattaaagg |
446 |
Q |
| |
|
||| ||| |||||| |
|
|
| T |
5283512 |
ttctgaactaaagg |
5283525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 134 - 263
Target Start/End: Complemental strand, 5253827 - 5253698
Alignment:
| Q |
134 |
tcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactactc |
233 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||||| ||||||||||||||||| | ||||||||| || || ||||| |||||| ||| ||||| |
|
|
| T |
5253827 |
tcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacaacaacaaactccactttatttccaggttcaatacttaataatactc |
5253728 |
T |
|
| Q |
234 |
tctccccctcctcatctccaaaggagatta |
263 |
Q |
| |
|
| | ||||||||| ||| |||||||||||| |
|
|
| T |
5253727 |
tttgcccctcctcgtcttcaaaggagatta |
5253698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 333 - 439
Target Start/End: Original strand, 5256350 - 5256456
Alignment:
| Q |
333 |
ctgatgttatgtcatctgaggttgaagtatagacaatgcacatcattgtctttaagttatgcctttccacttgagggacttcaaaagttacccaagaacc |
432 |
Q |
| |
|
||||||| ||| |||| | ||||||||||||||||||||||||||||| | | |||||| ||| ||| |||| ||||||||||||||||| ||||||| |
|
|
| T |
5256350 |
ctgatgtaatggcatcaggggttgaagtatagacaatgcacatcattgacatcaagttacgcccttcaacttcggggacttcaaaagttacagaagaacc |
5256449 |
T |
|
| Q |
433 |
ttcagaa |
439 |
Q |
| |
|
||||||| |
|
|
| T |
5256450 |
ttcagaa |
5256456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 133 - 245
Target Start/End: Original strand, 5256114 - 5256226
Alignment:
| Q |
133 |
atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactact |
232 |
Q |
| |
|
||||||||| | ||||| |||| || |||||||||||||| |||||| ||||||| || ||||||||||||||||| ||||| |||||||||| ||| |
|
|
| T |
5256114 |
atcatataccaaataaattgctgtcttcttcacaatgaaatcattcttgaaaacaaatacgacctccactttgttacctggttcaatacttgatattacc |
5256213 |
T |
|
| Q |
233 |
ctctccccctcct |
245 |
Q |
| |
|
|||| || ||||| |
|
|
| T |
5256214 |
ctctgccactcct |
5256226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 160 - 287
Target Start/End: Original strand, 5124470 - 5124597
Alignment:
| Q |
160 |
cttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactactctctccccctcctcatctccaaaggag |
259 |
Q |
| |
|
|||||||||||| | |||| |||||||| ||| | |||||||| ||||| ||||||||||| ||||||| ||| | ||||||||| ||| ||| | | |
|
|
| T |
5124470 |
cttcacaatgaagcggttcttaaaaacaaaaacaaattccactttattaccaggttctatactcgatactaatctatgcccctcctcctcttgaaatgcg |
5124569 |
T |
|
| Q |
260 |
attaatgtctcactcttatagagttgaa |
287 |
Q |
| |
|
| ||||| || |||||||||||||||| |
|
|
| T |
5124570 |
actaatgcatctctcttatagagttgaa |
5124597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 113; Significance: 5e-57; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 133 - 441
Target Start/End: Original strand, 4319302 - 4319610
Alignment:
| Q |
133 |
atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactact |
232 |
Q |
| |
|
|||||||| |||||||||||| || || |||||||||||| ||| ||||||| ||||| | |||||| |||| ||| ||||| ||| ||| ||| ||| |
|
|
| T |
4319302 |
atcatatatgagataaactgctgtcttcatcacaatgaaactgttcccaaaaacgacaacaatctccaccttgtcaccaggttccatatttgttacaact |
4319401 |
T |
|
| Q |
233 |
ctctccccctcctcatctccaaaggagattaatgtctcactcttatagagttgaacgatggctcttgtgtgatttatcactaacacgtttttaaggccat |
332 |
Q |
| |
|
|||| || |||||||| | |||||||| ||||| || |||||||||||||||| | ||| |||||||||||||||||||||| |||| |||||||| |
|
|
| T |
4319402 |
ctctgccactcctcattttcaaaggaggataatgcttctctcttatagagttgaatggtggtctttgtgtgatttatcactaacacattttcaaggccat |
4319501 |
T |
|
| Q |
333 |
ctgatgttatgtcatctgaggttgaagtatagacaatgcacatcattgtctttaagttatgcctttccacttgagggacttcaaaagttacccaagaacc |
432 |
Q |
| |
|
||||||||||||| | || | |||||| ||||||||||||||| |||||||| ||| || | | |||||||||||||||||||||| |||| ||||||| |
|
|
| T |
4319502 |
ctgatgttatgtcgtatgggcttgaagaatagacaatgcacattattgtcttcaagctacgtccttccacttgagggacttcaaaaattacagaagaacc |
4319601 |
T |
|
| Q |
433 |
ttcagaatt |
441 |
Q |
| |
|
||| ||||| |
|
|
| T |
4319602 |
ttctgaatt |
4319610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 143 - 423
Target Start/End: Complemental strand, 4337187 - 4336907
Alignment:
| Q |
143 |
agataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactactctctccccct |
242 |
Q |
| |
|
|||||||||| | ||||| ||||||| ||| ||| ||||||||||||| | ||| ||||| | ||| ||||| ||| ||||||| ||||||| || || |
|
|
| T |
4337187 |
agataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgataccactctctgccact |
4337088 |
T |
|
| Q |
243 |
cctcatctccaaaggagattaatgtctcactcttatagagttgaacgatggctcttgtgtgatttatcactaacacgtttttaaggccatctgatgttat |
342 |
Q |
| |
|
|||||| | | ||||| ||||| ||| |||||| ||||||||| | ||| |||||||||||||||| ||||| |||| |||||||||||||||||| |
|
|
| T |
4337087 |
cctcattttcgaaggacgataatgcctctctcttaaagagttgaatggtggtctttgtgtgatttatcaccaacacattttgaaggccatctgatgttat |
4336988 |
T |
|
| Q |
343 |
gtcatctgaggttgaagtatagacaatgcacatcattgtctttaagttatgcctttccacttgagggacttcaaaagttac |
423 |
Q |
| |
|
||||| || | |||||| |||||||||||||||||||||||| ||| || | | |||||| ||||||||||||||| |||| |
|
|
| T |
4336987 |
gtcatttgggcttgaagaatagacaatgcacatcattgtcttcaagctacgtccttccacatgagggacttcaaaatttac |
4336907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 133 - 418
Target Start/End: Original strand, 4122644 - 4122929
Alignment:
| Q |
133 |
atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactact |
232 |
Q |
| |
|
|||||||| |||||||||| | || || |||||||||||| || ||||||||||||| | ||||||||||| ||| ||||| ||| ||||||| ||| |
|
|
| T |
4122644 |
atcatatatgagataaactgatgtcttcatcacaatgaaactgtttccaaaaacaacaacaatctccactttgtcaccaggttccatatttgataccact |
4122743 |
T |
|
| Q |
233 |
ctctccccctcctcatctccaaaggagattaatgtctcactcttatagagttgaacgatggctcttgtgtgatttatcactaacacgtttttaaggccat |
332 |
Q |
| |
|
|||| || ||||||| | | |||||| ||| | ||| |||||||||||||||| | ||| |||||||||||||||| ||||| |||| ||||||| |
|
|
| T |
4122744 |
ctcttccattcctcattttctaaggaggataacgcctctctcttatagagttgaatggtggtctttgtgtgatttatcaccaacacattttgaaggccaa |
4122843 |
T |
|
| Q |
333 |
ctgatgttatgtcatctgaggttgaagtatagacaatgcacatcattgtctttaagttatgcctttccacttgagggacttcaaaa |
418 |
Q |
| |
|
|||||| |||| ||| || | |||| | |||||||||||||||||||||||| ||| || | | |||||||||||||||||||||| |
|
|
| T |
4122844 |
ctgatgctatgccatttgggcttgatgaatagacaatgcacatcattgtcttcaagctacgtccttccacttgagggacttcaaaa |
4122929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 123 - 423
Target Start/End: Complemental strand, 4362857 - 4362557
Alignment:
| Q |
123 |
caattggattatcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatact |
222 |
Q |
| |
|
||||||| | |||||||| |||||||||||| || || ||||||||| | ||| | | |||| ||| | ||||||||||| ||| ||||| ||| | |
|
|
| T |
4362857 |
caattggttcatcatatatgagataaactgctgtcttcgtcacaatgacattgttcaccattacaataactatctccactttgtcaccaggttccatatt |
4362758 |
T |
|
| Q |
223 |
tgatactactctctccccctcctcatctccaaaggagattaatgtctcactcttatagagttgaacgatggctcttgtgtgatttatcactaacacgttt |
322 |
Q |
| |
|
||||| ||||||| || ||| ||| | | ||||| ||| | ||| |||||||||||||||| | ||| |||||||||||||||| ||||| ||| |
|
|
| T |
4362757 |
tgatatcactctctgccagtccgcattttcgaaggacgataacgcctctctcttatagagttgaatggtggtctttgtgtgatttatcaccaacacattt |
4362658 |
T |
|
| Q |
323 |
ttaaggccatctgatgttatgtcatctgaggttgaagtatagacaatgcacatcattgtctttaagttatgcctttccacttgagggacttcaaaagtta |
422 |
Q |
| |
|
|||||||||||||||||||||||| || | |||||| ||||||||||||||| |||||||| ||| || | |||||||||||||||||||||| ||| |
|
|
| T |
4362657 |
ctaaggccatctgatgttatgtcatatgggcttgaagaatagacaatgcacattattgtcttcaagctacatccttccacttgagggacttcaaaaatta |
4362558 |
T |
|
| Q |
423 |
c |
423 |
Q |
| |
|
| |
|
|
| T |
4362557 |
c |
4362557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 123 - 417
Target Start/End: Complemental strand, 4346668 - 4346367
Alignment:
| Q |
123 |
caattggattatcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatact |
222 |
Q |
| |
|
||||||| | |||||||| |||||||||||| || || ||||||||| | ||| | | ||||||||| | ||||||||||| ||| ||||| ||| | |
|
|
| T |
4346668 |
caattggttcatcatatatgagataaactgctgtcttcgtcacaatgacattgttcaccataacaacaactatctccactttgtcaccaggttccatatt |
4346569 |
T |
|
| Q |
223 |
tgatactactctctccccctcctcatctccaaaggagattaatgtctcactcttatagagttgaacgatggctcttgtgtgatttatcactaacacgttt |
322 |
Q |
| |
|
|||| | ||||| || ||||| | ||||||| ||| | ||| |||||||||||||||| | ||| |||||||||||||||| ||||| ||| |
|
|
| T |
4346568 |
cgatatcattctctgccagtcctccctttcaaaggacgataacgcctctctcttatagagttgaatggtggtctttgtgtgatttatcaccaacacattt |
4346469 |
T |
|
| Q |
323 |
ttaaggccatctgatgt-------tatgtcatctgaggttgaagtatagacaatgcacatcattgtctttaagttatgcctttccacttgagggacttca |
415 |
Q |
| |
|
||||||||||||||||| ||||||||||| | |||||| ||||||||||||||| |||||||| ||| |||| | ||||||||||||||||||| |
|
|
| T |
4346468 |
ttaaggccatctgatgtctgatgttatgtcatctgggcttgaagaatagacaatgcacattattgtcttcaagctatgtccttccacttgagggacttca |
4346369 |
T |
|
| Q |
416 |
aa |
417 |
Q |
| |
|
|| |
|
|
| T |
4346368 |
aa |
4346367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 122 - 334
Target Start/End: Original strand, 4132607 - 4132816
Alignment:
| Q |
122 |
ccaattggattatcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatac |
221 |
Q |
| |
|
|||||||| | |||||||| |||||||||||| || || |||||||||||| ||| |||||||||||| | || ||||||| ||| ||||| ||| |
|
|
| T |
4132607 |
ccaattggttcatcatatatgagataaactgctgtcttcatcacaatgaaactgttcccaaaaacaacaatc---tcgactttgtcaccaggttccatat |
4132703 |
T |
|
| Q |
222 |
ttgatactactctctccccctcctcatctccaaaggagattaatgtctcactcttatagagttgaacgatggctctt-gtgtgatttatcactaacacgt |
320 |
Q |
| |
|
||||||||||||||| || |||||||| | |||||||| |||| ||| ||||||||||| |||| | | | |||| |||||||||||||| ||||| | |
|
|
| T |
4132704 |
ttgatactactctctgccactcctcattttcaaaggaggcgaatgcctctctcttatagagctgaatggtag-tcttcgtgtgatttatcaccaacacat |
4132802 |
T |
|
| Q |
321 |
ttttaaggccatct |
334 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
4132803 |
tttttaggccatct |
4132816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 178 - 281
Target Start/End: Complemental strand, 25569090 - 25568987
Alignment:
| Q |
178 |
ctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactactctctccccctcctcatctccaaaggagattaatgtctcactctta |
277 |
Q |
| |
|
||||||||||| ||| |||||||||||||| || ||||||||||||||||||||| | | ||||||||| | | ||||||| | ||||| ||| ||||| |
|
|
| T |
25569090 |
ctcaaaaacaaaaacaacctccactttgtttccaggttctatacttgatactactatatgcccctcctcgttttcaaaggaaactaatgcctctctcttg |
25568991 |
T |
|
| Q |
278 |
taga |
281 |
Q |
| |
|
|||| |
|
|
| T |
25568990 |
taga |
25568987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 246
Target Start/End: Original strand, 7884145 - 7884268
Alignment:
| Q |
123 |
caattggattatcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatact |
222 |
Q |
| |
|
||||||| | |||||| |||||||||| || | | ||||||||||||| |||| ||||||||||||||||| | || ||| || ||||||||| | |
|
|
| T |
7884145 |
caattggttcatcatagacaagataaattgttgttttcttcacaatgaattcatttgtaaaaacaacaaccaccttaatttcgtttccaggttctatatt |
7884244 |
T |
|
| Q |
223 |
tgatactactctctccccctcctc |
246 |
Q |
| |
|
||||| |||||||| || |||||| |
|
|
| T |
7884245 |
tgatattactctctgccactcctc |
7884268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 159 - 434
Target Start/End: Original strand, 36212947 - 36213222
Alignment:
| Q |
159 |
tcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactactctctccccctcctcatctccaaagga |
258 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||| ||| | ||| ||||||||||||||||||| ||||| ||||||||||||| |||| || |
|
|
| T |
36212947 |
tcttcacaatgaaattgttctcaaaaacaacaacaacctccattttatcaccaggttctatacttgatactaatctctgcccctcctcatcttcaaatga |
36213046 |
T |
|
| Q |
259 |
gattaatgtctcactcttatagagttgaacgatggctcttgtgtgatttatcactaacacgtttttaaggccatctgatgttatgtcatctgaggttgaa |
358 |
Q |
| |
|
|| ||||| ||| |||||||||| |||| | | || ||||||||||| | || | |||||||||||| |||||||||| ||||| |||| |||||| |
|
|
| T |
36213047 |
gactaatgcctctctcttatagatctgaatggtagcctttgtgtgattttttaccatcacgtttttaagtccatctgatgctatgttttctggagttgaa |
36213146 |
T |
|
| Q |
359 |
gtatagacaatgcacatcattgtctttaagttatgcctttccacttgagggacttcaaaagttacccaagaacctt |
434 |
Q |
| |
|
| ||||||||| ||||| ||||||||||||||| | | |||||| ||||||| |||||| |||| ||||||||| |
|
|
| T |
36213147 |
gaatagacaatacacattattgtctttaagttacgtccatccactcgagggacatcaaaaattacagaagaacctt |
36213222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 165 - 409
Target Start/End: Original strand, 7909 - 8150
Alignment:
| Q |
165 |
caatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactactctctccccctcctcatctccaaaggagattaa |
264 |
Q |
| |
|
|||||||||| | | ||||||||||||| |||||||||||||| |||||||||| ||||||||||| ||| | |||||||| |||||| ||| |
|
|
| T |
7909 |
caatgaaaccgtccccaaaaacaacaacaacctccactttgtttccgggttctacacttgatactaaattctgcttttcctcatccttaaaggaagctaa |
8008 |
T |
|
| Q |
265 |
tgtctcactcttatagagttgaacgatggctcttgtgtgatttatcactaacacgtttttaaggccatctgatgttatgtcatctgaggttgaagtatag |
364 |
Q |
| |
|
||| ||||||||||||| |||| | |||| |||||| |||| |||||||||| |||||||| ||||||| |||||||| ||| | ||||||| || |
|
|
| T |
8009 |
tgtttcactcttatagatctgaatggtggcctttgtgtaatttttcactaacacatttttaagaccatctggtgttatgttatccgcagttgaag---ag |
8105 |
T |
|
| Q |
365 |
acaatgcacatcattgtctttaagttatgcctttccacttgaggg |
409 |
Q |
| |
|
|||||||||||| || ||||||||||||| ||||||||||||| |
|
|
| T |
8106 |
gcaatgcacatcaatgactttaagttatgctcttccacttgaggg |
8150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 297 - 436
Target Start/End: Complemental strand, 8879660 - 8879521
Alignment:
| Q |
297 |
ttgtgtgatttatcactaacacgtttttaaggccatctgatgttatgtcatctgaggttgaagtatagacaatgcacatcattgtctttaagttatgcct |
396 |
Q |
| |
|
||||||||||||| || |||| ||||| || ||||||||| || ||| ||||| |||||| |||||||||||||||||||| | ||| ||||| || |
|
|
| T |
8879660 |
ttgtgtgatttataaccaacatattttttagtccatctgatattgtgttatctggggttgatgtatagacaatgcacatcatcgacttcaagtttctccc |
8879561 |
T |
|
| Q |
397 |
ttccacttgagggacttcaaaagttacccaagaaccttca |
436 |
Q |
| |
|
||| |||||||| |||| ||||||||| |||| ||||||| |
|
|
| T |
8879560 |
ttcaacttgaggaactttaaaagttacacaaggaccttca |
8879521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1476 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1476
Description:
Target: scaffold1476; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 94 - 43
Alignment:
| Q |
176 |
ttctcaaaaacaacaaccacctccactttgttaccgggttctatacttgata |
227 |
Q |
| |
|
|||||| |||||||| | ||||||||||| ||||| |||||||||||||||| |
|
|
| T |
94 |
ttctcataaacaacagcaacctccactttattaccaggttctatacttgata |
43 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 227
Target Start/End: Original strand, 22583345 - 22583396
Alignment:
| Q |
176 |
ttctcaaaaacaacaaccacctccactttgttaccgggttctatacttgata |
227 |
Q |
| |
|
|||||| |||||||| | ||||||||||| ||||| |||||||||||||||| |
|
|
| T |
22583345 |
ttctcataaacaacagcaacctccactttattaccaggttctatacttgata |
22583396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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