View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5050-Insertion-3 (Length: 363)
Name: NF5050-Insertion-3
Description: NF5050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5050-Insertion-3 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 8 - 363
Target Start/End: Complemental strand, 24267006 - 24266651
Alignment:
| Q |
8 |
aaggttatttctcatgcaaagtaaaaatgaatctatttttgacataataa-ccataatat-catttacatattattatgcagggttgaataatttggaag |
105 |
Q |
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| T |
24267006 |
aaggttatttttcaagcaaagtaaaaatcaatagatttttaacataataaaccataattttcatttacatattattatgcagggttgaataatttggaag |
24266907 |
T |
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| Q |
106 |
ttcttgacttgggtttcaatcttttctataatgctaccagcattttgtcttgtttggatggactttcttctctaaaatctctatcgttagctaatatgta |
205 |
Q |
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| T |
24266906 |
ttcttgacttgggtttcaatcttttctataatgctatcagcattttgtcttgtttggatggactttcttctcttaaatctctatcgttagctgatacgag |
24266807 |
T |
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| Q |
206 |
ctattcgacttcagttcacggtgaggccaggccagttttagttttctttcttnnnnnnntaaaattaataatttttaattgctttagcaaattaatttca |
305 |
Q |
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| T |
24266806 |
cgttatggtttcatttcacggtgaggacaggccagttttagttttctttctt-aaaaaataaaa-taataatttttaattgctttagcaaattaatttca |
24266709 |
T |
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| Q |
306 |
taacactaatacatatttgtactgtaccatagattttcagtcagttttggagacaatt |
363 |
Q |
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| T |
24266708 |
taacactaatacatatttgtattgtaccatagattttcagacagttttggagacaatt |
24266651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 8 - 255
Target Start/End: Complemental strand, 24249176 - 24248924
Alignment:
| Q |
8 |
aaggttatttctcatgcaaagtaaaaatgaatctatttttgacataataaccataatat-catttacatat----tattatgcagggttgaataatttgg |
102 |
Q |
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| T |
24249176 |
aaggttatttctcatacaaagtaaaagttaatctaattttgacatagtaaccataattttcatttacatatatattattatgcagggttgaaaaatcttg |
24249077 |
T |
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| Q |
103 |
aagttcttgacttgggtttcaatcttttctataatgctaccagcattttgtcttgtttggatggactttcttctctaaaatctctatcgttagctaatat |
202 |
Q |
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| T |
24249076 |
aaggtctttacttgagtgctaatcctttcgataatgctatcagcgttgtgtcttgtttggacggactttcttctcttaagtctctatcattagctgatat |
24248977 |
T |
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| Q |
203 |
gtactattcgacttcagttcacggtgaggccaggccagttttagttttctttc |
255 |
Q |
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| T |
24248976 |
gtactctatgacttcatttcaaggtgaggtcaggccgcatatagttttctttc |
24248924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 293 - 360
Target Start/End: Complemental strand, 24248870 - 24248803
Alignment:
| Q |
293 |
caaattaatttcataacactaatacatatttgtactgtaccatagattttcagtcagttttggagaca |
360 |
Q |
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| T |
24248870 |
caaattaatttaatagtactaatacatatttgtaccgtaccatagattttcacacagttttggagaca |
24248803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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