View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5050-Insertion-4 (Length: 282)
Name: NF5050-Insertion-4
Description: NF5050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5050-Insertion-4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 8 - 282
Target Start/End: Original strand, 5828827 - 5829101
Alignment:
| Q |
8 |
acaataaccaaagagaagaaccaaccgtctaatagagagaggaactaataaagaggagcaaccaaaaaattcaaatacatcgtcaataaagacttttcac |
107 |
Q |
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| T |
5828827 |
acaataaccaaagagaagaaccaactgtctaatagagagaggaactaataaagaggagcaacaaaaaaattcaaatacatcatcaataaagacttttcac |
5828926 |
T |
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| Q |
108 |
aaacacattatcaacaataacttgactcaccaaattatccaaaaaatacaccttaatagagttcttcacaaatcctctaaatttacaacccataagcaaa |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
5828927 |
aaacacattatcaacaataacttgactcaccaaattatccaaaaaatacaccttaatagagttcttcacaaatcttctaaatttacaacccataagcaaa |
5829026 |
T |
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| Q |
208 |
ctcatgaaattcgtggaaaaacaccctgaagcaaaacccttcatatgattcttacacaaacgccaccaacaagat |
282 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5829027 |
ctcatgaaattcgtggaagaacaccctgaagcaaaacccttcatatgattcttacacaaacgccaccaacaagat |
5829101 |
T |
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