View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5050_high_1 (Length: 988)
Name: NF5050_high_1
Description: NF5050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5050_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 570; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 176 - 773
Target Start/End: Original strand, 2628398 - 2628995
Alignment:
| Q |
176 |
ttccatatcacccaaattaccacgtgccaaattcggagctaactttttctaacgcttttatttcctccctctaattctaccattgtgcgtaaatctgatt |
275 |
Q |
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| T |
2628398 |
ttccatatcacccaaattaccacgtgccaaattcggagctaactttttctaacgcttttatttcctccctctaattctaccattgtgcataaatctgatt |
2628497 |
T |
|
| Q |
276 |
ggattacctaaatcagtcccgaacaattattcatcccataccagacccccgcaaaagctatctttgtgtatgcataggtatatattttggttctgtaatt |
375 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2628498 |
ggattacctaaatcagtcccgaacaattattcatcccataccagacccctgcaaaagctatctttgtgtatgcataggtatatattttggttctgtaatt |
2628597 |
T |
|
| Q |
376 |
taatttttcataggtattcagctcttgcttttaagtgttgtcaggtaatgaacttgtgttctggacattcatgtatttataagacttttacaatactgtc |
475 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2628598 |
taatttttcataggtattcagctcttgcttttaagtgttgtcaggtaatgaacttgtgttctggacattcatgtatttataagacttttacaatactgtc |
2628697 |
T |
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| Q |
476 |
acacataataatggtaatatcgttcaacttataagatcttttaatattactttttaataatccaatctagagtttttgtatgaaaaatccaacaatactc |
575 |
Q |
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|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2628698 |
acacttaacaatggtaatatcgttcaacttataagatcttttaatattactttttaataatccaatctagagtttttgtatgaaaaatccaacaataatc |
2628797 |
T |
|
| Q |
576 |
tattttgttaatcatgttattcttacgaagtatccatcgttgattagtactaagtactttaatagtaactaatcagtgtcagaaaagaatcagaattcga |
675 |
Q |
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| T |
2628798 |
tattttgttaatcatgttattcttacgaagtatccatcgttgtttagtactaagtactttaatagtaactaatcagtgtcagaaaagaatcagaattcga |
2628897 |
T |
|
| Q |
676 |
acccttgatgactctcttcctaactccttagtctcttatcactttttgttaaacccttatcatgcttctatgacttttcttcacaaatgtcatgtcta |
773 |
Q |
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| T |
2628898 |
acccttgatcactctcttcctaactccttagtctcttatcactttttgttaaacccttatcatgcttctatgacttttcttcacaaatgtcatgtcta |
2628995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 2628203 - 2628358
Alignment:
| Q |
1 |
ctcacagcagaccccaatacataagcatacacagtgaagggttccaacaccattcaaagtaagccatgagtttttgcatagtttactcaggagccatttc |
100 |
Q |
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| T |
2628203 |
ctcacagcagaccccaatacataagcatacacagtgaagggttccaacactattcaaagtaagacatgagtttttgcgtagtttactcaggagccatttc |
2628302 |
T |
|
| Q |
101 |
agtgaaatcatcctaatctcatccacttcagccgcacagcagttcccattagagaa |
156 |
Q |
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| T |
2628303 |
agtgaaatcatcttaatctcatccacttcagccgcacagcagttcacattagagaa |
2628358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 802 - 971
Target Start/End: Original strand, 2628989 - 2629158
Alignment:
| Q |
802 |
atgtctatagacaaatttcaacccnnnnnnnnaaaggaaatctctaccctgttttccacaataattaccccaattctgtgtttcataatttgactcaata |
901 |
Q |
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| T |
2628989 |
atgtctatagacaaatttcaacccttttttttaaaggaaatctctaccctgttttccacaataattaccccaattctgtctttcataatttgactcaata |
2629088 |
T |
|
| Q |
902 |
tttcttatattatgtaaccacttttatgttgcattcaattatgatattttctcaaattattattgtacat |
971 |
Q |
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| T |
2629089 |
tttcttatcttatgtaaccacttttatgttgcattcaattatgataatttctcaaattattattgtacat |
2629158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 224
Target Start/End: Original strand, 2628367 - 2628400
Alignment:
| Q |
191 |
attaccacgtgccaaattcggagctaactttttc |
224 |
Q |
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| T |
2628367 |
attaccacgtgccaaattcggagctaactttttc |
2628400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 930 - 964
Target Start/End: Original strand, 34093967 - 34094001
Alignment:
| Q |
930 |
ttgcattcaattatgatattttctcaaattattat |
964 |
Q |
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| T |
34093967 |
ttgcattcaattatgacattttctcaaattattat |
34094001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 933 - 966
Target Start/End: Original strand, 17080902 - 17080935
Alignment:
| Q |
933 |
cattcaattatgatattttctcaaattattattg |
966 |
Q |
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|||||||||||| ||||||||||||||||||||| |
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| T |
17080902 |
cattcaattatgttattttctcaaattattattg |
17080935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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