View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5050_high_2 (Length: 683)
Name: NF5050_high_2
Description: NF5050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5050_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 627; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 627; E-Value: 0
Query Start/End: Original strand, 1 - 680
Target Start/End: Complemental strand, 2627275 - 2626596
Alignment:
| Q |
1 |
acataacgaagcttctatctcattcctatgttgaatagtatcttgatattaaaaaattatggtgtttatcattaggtgataatgtgaaggcgcatcaatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2627275 |
acataacgaagcttctatctcattcctatgttgaatagtatcttgatattaaaaaattatggtgtttatcattaggtgataatgtgaaggtgcatcaatg |
2627176 |
T |
|
| Q |
101 |
tccctctttgagtcagnnnnnnnttatcactgatgctataagaagattgaagccaacagttcctgatctggaaggacattctgtacagttgtttcagaat |
200 |
Q |
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|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2627175 |
tccctctttgagtcagaaaaaaattaccactgatgctataagaagattgaagccaacagttcctgatctggaaggacattctgtacagttgtttcagaat |
2627076 |
T |
|
| Q |
201 |
aaaattttgattattccagacgctgcagctaccagtggtaaggctgaactctttatgcattctcctgccttaagcccgttccacatttggggaaagaatc |
300 |
Q |
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| T |
2627075 |
aaaattttgattattccagacgctgcagctaccagtggtaaggctgaactctttatgcattctcctgccttaagcccgttccacatttggggaaagaatc |
2626976 |
T |
|
| Q |
301 |
taaagttggaaaggaagaaccatccgagacttaaaaatatattagagcatggaatggttgatatgtgctttgaaaattgttcaagaatgagtgaagctca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2626975 |
taaagttggaaaggaagaaccatccgagacttaaaaatatattagagcatggaatggttgatatgtgctttgaaaattgttctagaatgagtgaagctca |
2626876 |
T |
|
| Q |
401 |
tttttctatcgcttccaatttcaagactcatttctctaggttgcctgacatagaaaccactatatgccttaacagaaaaagaaagcgaccagataaacat |
500 |
Q |
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| T |
2626875 |
tttttctatcgcttccaatttcaagactcatttctctagtttgcctgacatagaaaccactatatgccttaacagaaaaagaaagcgaccagataaacat |
2626776 |
T |
|
| Q |
501 |
gctttatgtcctcaaattggcagagctcaagaaaatgaaggttttgcatacatctcaaaaaataccagacctaggatctcacacatcagtactcttgaac |
600 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2626775 |
gctttatgtcctcaaattggcagagctcaagaaaatgaaggttttgcatacatctcaaaaaataccagacctaggatctcaaacatcagtactcttgaac |
2626676 |
T |
|
| Q |
601 |
cagaagaaagtattcgaaaagacattctgtcctgcacacactttcctgaaattagcataatcttcactgatgatgtccat |
680 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||| |
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| T |
2626675 |
cagaagaaagtattcgaaaagacattctgtcctgcacacactttcatgaaactagcataatcttcactgatgaggtccat |
2626596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 169 - 433
Target Start/End: Complemental strand, 2638837 - 2638573
Alignment:
| Q |
169 |
tggaaggacattctgtacagttgtttcagaataaaattttgattattccagacgctgcagctaccagtggtaaggctgaactctttatgcattctcctgc |
268 |
Q |
| |
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|||||||||||||| ||| |||||||||||||||| ||| |||||||||||| ||| || |||| |||||||||||||||||||||||||||||||||| |
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| T |
2638837 |
tggaaggacattctataccgttgtttcagaataaactttggattattccagaggctccaactacgggtggtaaggctgaactctttatgcattctcctgc |
2638738 |
T |
|
| Q |
269 |
cttaagcccgttccacatttggggaaagaatctaaagttggaaaggaagaaccatccgagacttaaaaatatattagagcatggaatggttgatatgtgc |
368 |
Q |
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||||||||| ||||||||||||||||||||||||||||| |||||| ||||| ||||| | ||||||||||||||||||| ||||| |||||||| ||| |
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| T |
2638737 |
cttaagcccattccacatttggggaaagaatctaaagttagaaaggcagaacagtccgatatttaaaaatatattagagcacggaatagttgatatctgc |
2638638 |
T |
|
| Q |
369 |
tttgaaaattgttcaagaatgagtgaagctcatttttctatcgcttccaatttcaagactcattt |
433 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2638637 |
tttgaaaattgttctagaatgagtgaagctcatttttctatcgcttccaatttcaagactcattt |
2638573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 435 - 537
Target Start/End: Complemental strand, 2638526 - 2638424
Alignment:
| Q |
435 |
tctaggttgcctgacatagaaaccactatatgccttaacagaaaaagaaagcgaccagataaacatgctttatgtcctcaaattggcagagctcaagaaa |
534 |
Q |
| |
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||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||| | ||||||| |
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| T |
2638526 |
tctaggttgcctgacatagaaacgactatgtgcctcgacagaaaaagaaagcgaccagataaacatgctttatgttctcaaattcgcagggagcaagaaa |
2638427 |
T |
|
| Q |
535 |
atg |
537 |
Q |
| |
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||| |
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| T |
2638426 |
atg |
2638424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 257 - 363
Target Start/End: Original strand, 44003835 - 44003941
Alignment:
| Q |
257 |
gcattctcctgccttaagcccgttccacatttggggaaagaatctaaagttggaaaggaagaaccatccgagacttaaaaatatattagagcatggaatg |
356 |
Q |
| |
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||||||||||| ||||||||| |||||||| |||||||||| |||||||||||||||| | | || || ||| || ||||| ||||||| ||||| ||| |
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| T |
44003835 |
gcattctcctggcttaagcccattccacatatggggaaagagtctaaagttggaaaggcatagccttcttagattttaaaatttattagatcatggcatg |
44003934 |
T |
|
| Q |
357 |
gttgata |
363 |
Q |
| |
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||||||| |
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|
| T |
44003935 |
gttgata |
44003941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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