View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5050_low_4 (Length: 418)
Name: NF5050_low_4
Description: NF5050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5050_low_4 |
 |  |
|
Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 34 - 412
Target Start/End: Complemental strand, 12931055 - 12930676
Alignment:
| Q |
34 |
agctctgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnn |
133 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
12931055 |
agctctgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcga |
12930956 |
T |
 |
| Q |
134 |
nnnnn---tgaacaccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaata |
230 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12930955 |
taaaaaaatgaacaccaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaata |
12930856 |
T |
 |
| Q |
231 |
ttacaatattctctccactctctnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacc |
330 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
12930855 |
ttacaatattctctccactctctcacacacaca--agagatacaatatagtgtttcccgtgagacctacttttattctaatgctattattttatagcacc |
12930758 |
T |
 |
| Q |
331 |
tagaagttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcac |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
12930757 |
tagaagttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctcac |
12930676 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 49 - 412
Target Start/End: Complemental strand, 12935786 - 12935422
Alignment:
| Q |
49 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnn---tgaacac |
145 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||| ||||||| |
|
|
| T |
12935786 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaattcaaaagaaactggatcttgcagcgcagcggtagcgataaaaaaatgaacac |
12935687 |
T |
 |
| Q |
146 |
caatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12935686 |
caatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc |
12935587 |
T |
 |
| Q |
246 |
cactctctnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagaga |
345 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
12935586 |
cactctctcacacacaca--agagatacaatatagtgtttcccgtgagacctacttttactctaatgctattattttatagcacctagaagttatagaga |
12935489 |
T |
 |
| Q |
346 |
tgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcac |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
12935488 |
tgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctcac |
12935422 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 183 - 253
Target Start/End: Original strand, 26504985 - 26505055
Alignment:
| Q |
183 |
aaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctct |
253 |
Q |
| |
|
|||||||| | ||||||||| |||||||||| |||||| |||| |||||||||||||||| || ||||||| |
|
|
| T |
26504985 |
aaaaccacagtacaaactccaaaaaatattcaactataataaaaaatattacaatattctttcaactctct |
26505055 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 139 - 251
Target Start/End: Complemental strand, 15589060 - 15588948
Alignment:
| Q |
139 |
tgaacaccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaata |
238 |
Q |
| |
|
|||||| ||||||||| || ||||||||||| || |||| |||||| || | ||||||||| ||||||||| |||| ||| ||| |||||||||| | |
|
|
| T |
15589060 |
tgaacatcaatatttattttgaaaaaccctctattaatgagagaaaaatcaagtgacaaactctaaaaaatatttcactttatcaaacaatattacaaca |
15588961 |
T |
 |
| Q |
239 |
ttctctccactct |
251 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
15588960 |
ttttctccactct |
15588948 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 26504850 - 26504895
Alignment:
| Q |
57 |
tcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaa |
102 |
Q |
| |
|
|||||||| |||| | ||||||||||||||||| |||||||||||| |
|
|
| T |
26504850 |
tcgacgagtttaatggaagtgtaaattaaaatttcaaaatccaaaa |
26504895 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 34 - 412
Target Start/End: Complemental strand, 14174317 - 14173937
Alignment:
| Q |
34 |
agctctgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnn |
133 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
14174317 |
agctctgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagtga |
14174218 |
T |
 |
| Q |
134 |
nnnnn----tgaacaccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaat |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14174217 |
taaaaaaaatgaacaccaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaat |
14174118 |
T |
 |
| Q |
230 |
attacaatattctctccactctctnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcac |
329 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
14174117 |
attacaatattctctccactctctcacacacaca--agagatacaatatagtgtttcccgtgagacctacttctattctaatgctattattttatagcac |
14174020 |
T |
 |
| Q |
330 |
ctagaagttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcac |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
14174019 |
ctagaagttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctcac |
14173937 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 34 - 412
Target Start/End: Original strand, 28611553 - 28611933
Alignment:
| Q |
34 |
agctctgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnn |
133 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
28611553 |
agctctgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcga |
28611652 |
T |
 |
| Q |
134 |
nnnnn----tgaacaccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaat |
229 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28611653 |
taaaaaaaatgaacaccaatatttaacgtgaaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaat |
28611752 |
T |
 |
| Q |
230 |
attacaatattctctccactctctnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcac |
329 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
28611753 |
attacaatattctctccactctctcacacacaca--agagatacaatatagtgtttcccgtgagacctacttctattctaatgctattattttatagcac |
28611850 |
T |
 |
| Q |
330 |
ctagaagttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcac |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
28611851 |
ctagaagttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctcac |
28611933 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 48 - 412
Target Start/End: Complemental strand, 14179057 - 14178691
Alignment:
| Q |
48 |
ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnn----tgaac |
143 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
14179057 |
ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcaataaaaaaaatgaac |
14178958 |
T |
 |
| Q |
144 |
accaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctc |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14178957 |
accaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctc |
14178858 |
T |
 |
| Q |
244 |
tccactctctnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttataga |
343 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
14178857 |
tccactctctcacacacaca--agagatacaatatagtgtttcccgtgagacctacttctattctaatgctattattttatagcacctagaagttataga |
14178760 |
T |
 |
| Q |
344 |
gatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcac |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
14178759 |
gatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctcac |
14178691 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 48 - 412
Target Start/End: Original strand, 28606805 - 28607171
Alignment:
| Q |
48 |
ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnn----tgaac |
143 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||| |
|
|
| T |
28606805 |
ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcgataaaaaaaattaac |
28606904 |
T |
 |
| Q |
144 |
accaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctc |
243 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28606905 |
accaatatttaacgtgaaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctc |
28607004 |
T |
 |
| Q |
244 |
tccactctctnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttataga |
343 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
28607005 |
tccactctctcacacacaca--agagatacaatatagtgtttcccgtgagacctacttctattctaatgctattattttatagcacctagaagttataga |
28607102 |
T |
 |
| Q |
344 |
gatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcac |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
28607103 |
gatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctcac |
28607171 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 49 - 412
Target Start/End: Complemental strand, 44161949 - 44161586
Alignment:
| Q |
49 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnn----tgaaca |
144 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
44161949 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcgataaaaaaaatgaaca |
44161850 |
T |
 |
| Q |
145 |
ccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctct |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
44161849 |
ccaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaat--tctct |
44161752 |
T |
 |
| Q |
245 |
ccactctctnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagag |
344 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
44161751 |
ccactctcttacacacaca--agagatacaatatagtgtttcccgtaagacctacttctattctaatgctattattttatagcacctagaagttatagag |
44161654 |
T |
 |
| Q |
345 |
atgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcac |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
44161653 |
atgatacccacccggtgtatttttcccacactctctggatttactcaacactctattattcctctcac |
44161586 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 49 - 404
Target Start/End: Complemental strand, 11104829 - 11104477
Alignment:
| Q |
49 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnn-tgaacacca |
147 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
11104829 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagctgtagcgataaaaatgaacacca |
11104730 |
T |
 |
| Q |
148 |
atatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctcca |
247 |
Q |
| |
|
||||||||| | ||||| ||||||||| ||||| ||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
11104729 |
atatttaacatagaaaatcctctaatatcgagggtaaa-ccacgggacaaactccgaaaaatattccaccatatctaagaatattacaatattctctcca |
11104631 |
T |
 |
| Q |
248 |
ctctctnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatg |
347 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| ||| |||||| ||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
11104630 |
ctctcttacacacaa---agagatacaatatagtgtttcccgtgagacccactcctattcaaatgctattattttataacacctagaagttatagagatg |
11104534 |
T |
 |
| Q |
348 |
atacccacccggtgtatttttcccacactctctggatttactcaacactctattttt |
404 |
Q |
| |
|
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
11104533 |
atatccacccggtgtatttttcctacactctctggatttactcaacactctattttt |
11104477 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 48 - 350
Target Start/End: Original strand, 48826701 - 48827000
Alignment:
| Q |
48 |
ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnt--gaacac |
145 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||||| |||||| ||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
48826701 |
ttgttgggatcgacgagcttaacgcaattgtaaattaaaatttcaaaattcaa--gagattggatcttgcagcgcagcggtagcgatagaaaaagaacac |
48826798 |
T |
 |
| Q |
146 |
caatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc |
245 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48826799 |
caatatttaacgtggaaaatcctctaataccgagggaaaaatcacgggacaa-ctccgaaaaatattccactatattaaagaatattacaatattctctt |
48826897 |
T |
 |
| Q |
246 |
cactctctnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagaga |
345 |
Q |
| |
|
| |||||| ||||||||||||||||||||||||||||| ||| ||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
48826898 |
cgctctct--tacacacacaagagatacaatatagtgtttcccgtgagattcactcctatttgaatgctattattttatagcacctagaagttatagaga |
48826995 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 144 - 245
Target Start/End: Original strand, 48708155 - 48708256
Alignment:
| Q |
144 |
accaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctc |
243 |
Q |
| |
|
||||||||||||| || ||||| || ||||||| || ||||||||||| |||||||||| ||||||||| || ||||||||| ||||||||||||||||| |
|
|
| T |
48708155 |
accaatatttaacatgaaaaactctataatactaagagaaaaaccacgtgacaaactccaaaaaatatttcattatattaaaaaatattacaatattctc |
48708254 |
T |
 |
| Q |
244 |
tc |
245 |
Q |
| |
|
|| |
|
|
| T |
48708255 |
tc |
48708256 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 160 - 253
Target Start/End: Original strand, 24726288 - 24726381
Alignment:
| Q |
160 |
gaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctct |
253 |
Q |
| |
|
||||||| ||||||| |||||||| ||||| ||||||||| ||||||||||||| |||||||||||| || | ||||||||||||| ||||| |
|
|
| T |
24726288 |
gaaaaccatctaatatcaagggaaaagccacgagacaaactctgaaaaatattccattatattaaagaacataataatattctctccattctct |
24726381 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 49 - 412
Target Start/End: Complemental strand, 34907503 - 34907139
Alignment:
| Q |
49 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnn---tgaacac |
145 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
34907503 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcgataaaaaaatgaacac |
34907404 |
T |
 |
| Q |
146 |
caatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34907403 |
caatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc |
34907304 |
T |
 |
| Q |
246 |
cactctctnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagaga |
345 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34907303 |
cactctctcacacacaca--agagatacaatatagtgtttcccgtgagacctacttttattctaatgctattattttatagcacctagaagttatagaga |
34907206 |
T |
 |
| Q |
346 |
tgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcac |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
34907205 |
tgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctcac |
34907139 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 49 - 412
Target Start/End: Original strand, 37040426 - 37040791
Alignment:
| Q |
49 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnn----tgaaca |
144 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||| |
|
|
| T |
37040426 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaaagactggatcttgcagcgcagcggtagcgataaaaaaaatgaaca |
37040525 |
T |
 |
| Q |
145 |
ccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctct |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
37040526 |
ccaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattttct |
37040625 |
T |
 |
| Q |
245 |
ccactctctnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagag |
344 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
37040626 |
ccactctctcacacacaca--agagatacaatatagtgttttccgtgagacctacttctattctaatgctattattttatagcacctagaagttatagag |
37040723 |
T |
 |
| Q |
345 |
atgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcac |
412 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
37040724 |
atgatacccacccgatgtatttttcccacactctctggatttactcaacactctatttttcctctcac |
37040791 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 34 - 401
Target Start/End: Complemental strand, 15290609 - 15290243
Alignment:
| Q |
34 |
agctctgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaa-gagattggatcttgcagcgcagcggtagcn |
132 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
15290609 |
agctctgataccacttgttgggctcgacgagcttaacgcaattgtaaattaaaatttcaaaatccaaaaagagattggatcttgcagcgcagccttagcg |
15290510 |
T |
 |
| Q |
133 |
nnnnnn----tgaacaccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaa |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||| ||| || |||||||||||| ||||| |
|
|
| T |
15290509 |
ataaaaaaaatgaacaccaatatttaacgtggaaaaccctctaataccgaggtataaaccacgggacaaactccaaaagattttccactatatttaagaa |
15290410 |
T |
 |
| Q |
229 |
tattacaatattctctccactctctnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagca |
328 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||| |||||| |||||||| |||| |||| |
|
|
| T |
15290409 |
tattacaatattctctccactctct--tacacacacaagagatacaatatagtgttt-ccgtgagacccactcctattcgaatgctat--tatttcagca |
15290315 |
T |
 |
| Q |
329 |
cctagaagttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatt |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||| |
|
|
| T |
15290314 |
cctagaagttatagagatgatacccacccggtgtattttt-ccacactttctggatttagtcaacactctatt |
15290243 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 49 - 351
Target Start/End: Complemental strand, 12099361 - 12099060
Alignment:
| Q |
49 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnn-tgaacacca |
147 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||| || || |||| |||| | || |
|
|
| T |
12099361 |
tgttgggctcgacgagtttaacgcgagtgtaaattaaaattccaaaatccaaaagagatatgatcttgcagctcaccgatagcgataaaaatgaaaagca |
12099262 |
T |
 |
| Q |
148 |
atatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctcca |
247 |
Q |
| |
|
|||||| ||||| ||||||||||||| || |||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
12099261 |
atattttacgtgaaaaaccctctaatgacgaaggaaaaaccaagggacaaactccgaaaaaatttcaactatattaaagaatattacaatattctctcca |
12099162 |
T |
 |
| Q |
248 |
ctctctnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatg |
347 |
Q |
| |
|
|||||| ||||| ||||||| ||||||| ||||||| ||| |||||| |||| |||||| ||||| |||||| |||||||||||||| |
|
|
| T |
12099161 |
ctctct--tacacgcacaagagacacaatattgtgtttctagtgagactcactcctattcaaatgatattattttataacacctaaaagttatagagatg |
12099064 |
T |
 |
| Q |
348 |
atac |
351 |
Q |
| |
|
|||| |
|
|
| T |
12099063 |
atac |
12099060 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 196 - 406
Target Start/End: Complemental strand, 12082227 - 12082021
Alignment:
| Q |
196 |
aaactccgaaaaatattccactatattaaagaatattacaatattctctccactctctnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagac |
295 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
12082227 |
aaactccaaaaaatattccactatattaa-gaatattacaatattttctccactctcttacacggaaa--agagatacaatatagtgtttctaatgagac |
12082131 |
T |
 |
| Q |
296 |
ctacttctattctaatgctattatattatagcacctagaagttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaacac |
395 |
Q |
| |
|
|| |||||| |||| |||||| ||||||| |||||||||||||||||| ||||| ||||| | |||||||||| | | ||||||||||| |||||| |
|
|
| T |
12082130 |
tcgctcctattcaaatgttattattttatagcgcctagaagttatagagataatacctacccgatatatttttccc-ctttttctggatttacccaacac |
12082032 |
T |
 |
| Q |
396 |
tctatttttct |
406 |
Q |
| |
|
|||| |||||| |
|
|
| T |
12082031 |
tctaattttct |
12082021 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 49 - 131
Target Start/End: Complemental strand, 12084751 - 12084669
Alignment:
| Q |
49 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagc |
131 |
Q |
| |
|
|||||||||| ||||||||||| | || ||||||||||||| |||||||||| ||| ||||||||||| |||||| ||||||| |
|
|
| T |
12084751 |
tgttgggctcaacgagcttaacacgagggtaaattaaaatttcaaaatccaatagacattggatcttgtagcgcaacggtagc |
12084669 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 141 - 253
Target Start/End: Original strand, 2757307 - 2757418
Alignment:
| Q |
141 |
aacaccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatatt |
240 |
Q |
| |
|
||||||||||||||| || ||| |||| |||| || | |||||||||| | |||||| | ||||| |||||||||||||| || |||||| || |||| |
|
|
| T |
2757307 |
aacaccaatatttaatatgaaaacccctttaatgcttaaggaaaaaccatgagacaaattttgaaaa-tattccactatatttaaaaatattgcactatt |
2757405 |
T |
 |
| Q |
241 |
ctctccactctct |
253 |
Q |
| |
|
||||||||||||| |
|
|
| T |
2757406 |
ctctccactctct |
2757418 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 109
Target Start/End: Original strand, 2757199 - 2757273
Alignment:
| Q |
35 |
gctctgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattg |
109 |
Q |
| |
|
||||| ||| ||||||||| | || ||||||||| ||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
2757199 |
gctcttatatcacttgttgtgttcaacgagcttattacaagtgtaaattaaaattccaaaattcaaaagaaattg |
2757273 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 49 - 396
Target Start/End: Original strand, 29106878 - 29107224
Alignment:
| Q |
49 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnn-tgaacacca |
147 |
Q |
| |
|
||||||| |||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
29106878 |
tgttgggatcgaggagcttaatgcaagtgtaaattaaaattccaaaatccaaaaaagattggatcttgcagcgcagcggtagcgttaaaaatgaacacca |
29106977 |
T |
 |
| Q |
148 |
atatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctcca |
247 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29106978 |
atatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctcca |
29107077 |
T |
 |
| Q |
248 |
ctctctnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatg |
347 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||| |
|
|
| T |
29107078 |
ctctct--tacacacacaagagatacaa-atagtgtttcccgtgagacctacttctattctaatgctattattttttagcacctagaagttataaagatg |
29107174 |
T |
 |
| Q |
348 |
ata-cccacccggtgtatttttcccacactctctggatttactcaacact |
396 |
Q |
| |
|
||| ||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29107175 |
ataccccacccaatgtatttttcccacactctctggatttactcaacact |
29107224 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 48 - 404
Target Start/End: Original strand, 42910992 - 42911346
Alignment:
| Q |
48 |
ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnn-tgaacacc |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||| | | |||||||| |
|
|
| T |
42910992 |
ttgttgggctcgacgagcttaacgcaagtggaaattaaaattttaaaatccaaaagagattagatcttgcagcgcagcggcaacgataaaaatgaacacc |
42911091 |
T |
 |
| Q |
147 |
aatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctcc |
246 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
42911092 |
aatatttaacatggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaa-tattccactatatttaagaatattacaatattctctcc |
42911190 |
T |
 |
| Q |
247 |
actctctnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagat |
346 |
Q |
| |
|
||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
42911191 |
actctctcacacacaca--aaagatacaatatagtgtttcccttgagacctacttctattctaatgctattattttatagcaccaagaagttatagagat |
42911288 |
T |
 |
| Q |
347 |
gatacccacccggtgtatttttcccacactctctggatttactcaacactctattttt |
404 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
42911289 |
gatacccacccagtgtattttttccacactctctggatttactcaacactctattttt |
42911346 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 34 - 129
Target Start/End: Original strand, 38994684 - 38994779
Alignment:
| Q |
34 |
agctctgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggta |
129 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||| || |||||||||||||||||||||| ||||| | |||||||||||||| ||||||||| |
|
|
| T |
38994684 |
agctctgataccacttgttgggcttgacgatcttaatgctagtgtaaattaaaattccaaaacccaaacaaaattggatcttgcagtgcagcggta |
38994779 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 140 - 230
Target Start/End: Original strand, 38997230 - 38997320
Alignment:
| Q |
140 |
gaacaccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaata |
230 |
Q |
| |
|
||||| |||||||| |||| ||||||||||||||| || ||||||| |||||||||||||| ||||||| |||| |||||||||||||| |
|
|
| T |
38997230 |
gaacagcaatattttacgtcgaaaaccctctaatatcgaacgaaaaactacgggacaaactccaaaaaataatccattatattaaagaata |
38997320 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 104
Target Start/End: Original strand, 38997123 - 38997193
Alignment:
| Q |
34 |
agctctgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaga |
104 |
Q |
| |
|
|||||| |||| |||||||||| |||| | |||||| || |||||||||||||||||| ||||||||||| |
|
|
| T |
38997123 |
agctctaatactacttgttgggttcgaagggcttaatgcgggtgtaaattaaaattccagaatccaaaaga |
38997193 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 48 - 412
Target Start/End: Complemental strand, 8539549 - 8539183
Alignment:
| Q |
48 |
ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnn--tgaacac |
145 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
8539549 |
ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaattctaaaagagattggatcttgcagcgcagcggtaacaataaaaaatgaacat |
8539450 |
T |
 |
| Q |
146 |
caatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
8539449 |
caatatttaacgtggaaaaccctctaataccgagggaaaaatcacgggacaaactccgaaagatattccactatatttaagaatattacaatattatctc |
8539350 |
T |
 |
| Q |
246 |
cactctctnnnnnnnnnnnnagagatacaa---tatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatag |
342 |
Q |
| |
|
|||||||| |||||||||| |||||||||| |||||||||| ||| |||||| | ||||||||| ||| |||||||| ||||||||| |
|
|
| T |
8539349 |
cactctct--tacacacacaagagatacaatattatagtgttt-ccgtgagacccactcctattcgattgctattattttacagcacctaaaagttatag |
8539253 |
T |
 |
| Q |
343 |
agatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcac |
412 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||||| ||||||| |||||| |||||||| |||||| |
|
|
| T |
8539252 |
agatgatacccatccgatgtatttttcccacactctctgaatttactgaacactatatttttcctctcac |
8539183 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 1e-48; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 267 - 405
Target Start/End: Complemental strand, 51302306 - 51302168
Alignment:
| Q |
267 |
gagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatgatacccacccggtgtattt |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| |||||| ||||| ||| | ||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
51302306 |
gagatacaatatagtgtttcccgtgagacccactcctattcgaatgcaattgttttatagcacctagaagttatagagatgattcccacccggtgtattt |
51302207 |
T |
 |
| Q |
367 |
ttcccacactctctggatttactcaacactctatttttc |
405 |
Q |
| |
|
| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
51302206 |
tatccacactctctggatttactcaatactctatttttc |
51302168 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 34 - 131
Target Start/End: Complemental strand, 51303034 - 51302937
Alignment:
| Q |
34 |
agctctgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagc |
131 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
51303034 |
agctccgataccacttgttgggatcgacgagcttaatgcaagtgtaaattaaaatttcaaaatccaaaacagattggatcttgcagcgcagcggtagc |
51302937 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 51302344 - 51302308
Alignment:
| Q |
139 |
tgaacaccaatatttaacgtggaaaaccctctaatac |
175 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51302344 |
tgaacaccaatatttaacgtggaaaaccctctaatac |
51302308 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 49 - 230
Target Start/End: Original strand, 2100199 - 2100379
Alignment:
| Q |
49 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattgga-tcttgcagcgcagcggtagcnnnnnnnt-gaacacc |
146 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||| || | ||||||| || || || | ||||| | |
|
|
| T |
2100199 |
tgttgggctcgacgagcttaacacaagtgtaaattaaaattccaaaattcataagagatttgaattttgcagcacaacgataatgataaaattgaacatc |
2100298 |
T |
 |
| Q |
147 |
aatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaata |
230 |
Q |
| |
|
||||||||| |||||||||||| ||||| |||| ||||||| ||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2100299 |
aatatttaaggtggaaaaccctttaataatgagcgaaaaac---ggggcaaactccgaaaaatattccactatattaaagaata |
2100379 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 253
Target Start/End: Original strand, 2100723 - 2100753
Alignment:
| Q |
223 |
aaagaatattacaatattctctccactctct |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
2100723 |
aaagaatattacaatattctctccactctct |
2100753 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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