View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5050_low_4 (Length: 418)

Name: NF5050_low_4
Description: NF5050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5050_low_4
NF5050_low_4
[»] chr8 (5 HSPs)
chr8 (34-412)||(12930676-12931055)
chr8 (49-412)||(12935422-12935786)
chr8 (183-253)||(26504985-26505055)
chr8 (139-251)||(15588948-15589060)
chr8 (57-102)||(26504850-26504895)
[»] chr4 (9 HSPs)
chr4 (34-412)||(14173937-14174317)
chr4 (34-412)||(28611553-28611933)
chr4 (48-412)||(14178691-14179057)
chr4 (48-412)||(28606805-28607171)
chr4 (49-412)||(44161586-44161949)
chr4 (49-404)||(11104477-11104829)
chr4 (48-350)||(48826701-48827000)
chr4 (144-245)||(48708155-48708256)
chr4 (160-253)||(24726288-24726381)
[»] chr1 (1 HSPs)
chr1 (49-412)||(34907139-34907503)
[»] chr7 (7 HSPs)
chr7 (49-412)||(37040426-37040791)
chr7 (34-401)||(15290243-15290609)
chr7 (49-351)||(12099060-12099361)
chr7 (196-406)||(12082021-12082227)
chr7 (49-131)||(12084669-12084751)
chr7 (141-253)||(2757307-2757418)
chr7 (35-109)||(2757199-2757273)
[»] chr5 (5 HSPs)
chr5 (49-396)||(29106878-29107224)
chr5 (48-404)||(42910992-42911346)
chr5 (34-129)||(38994684-38994779)
chr5 (140-230)||(38997230-38997320)
chr5 (34-104)||(38997123-38997193)
[»] chr2 (1 HSPs)
chr2 (48-412)||(8539183-8539549)
[»] chr3 (3 HSPs)
chr3 (267-405)||(51302168-51302306)
chr3 (34-131)||(51302937-51303034)
chr3 (139-175)||(51302308-51302344)
[»] chr6 (2 HSPs)
chr6 (49-230)||(2100199-2100379)
chr6 (223-253)||(2100723-2100753)


Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 34 - 412
Target Start/End: Complemental strand, 12931055 - 12930676
Alignment:
34 agctctgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnn 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||      
12931055 agctctgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcga 12930956  T
134 nnnnn---tgaacaccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaata 230  Q
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
12930955 taaaaaaatgaacaccaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaata 12930856  T
231 ttacaatattctctccactctctnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacc 330  Q
    |||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
12930855 ttacaatattctctccactctctcacacacaca--agagatacaatatagtgtttcccgtgagacctacttttattctaatgctattattttatagcacc 12930758  T
331 tagaagttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcac 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
12930757 tagaagttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctcac 12930676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 49 - 412
Target Start/End: Complemental strand, 12935786 - 12935422
Alignment:
49 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnn---tgaacac 145  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||          |||||||    
12935786 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaattcaaaagaaactggatcttgcagcgcagcggtagcgataaaaaaatgaacac 12935687  T
146 caatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc 245  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
12935686 caatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc 12935587  T
246 cactctctnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagaga 345  Q
    ||||||||            |||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||    
12935586 cactctctcacacacaca--agagatacaatatagtgtttcccgtgagacctacttttactctaatgctattattttatagcacctagaagttatagaga 12935489  T
346 tgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcac 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
12935488 tgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctcac 12935422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 183 - 253
Target Start/End: Original strand, 26504985 - 26505055
Alignment:
183 aaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctct 253  Q
    |||||||| | ||||||||| |||||||||| |||||| |||| |||||||||||||||| || |||||||    
26504985 aaaaccacagtacaaactccaaaaaatattcaactataataaaaaatattacaatattctttcaactctct 26505055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 139 - 251
Target Start/End: Complemental strand, 15589060 - 15588948
Alignment:
139 tgaacaccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaata 238  Q
    |||||| |||||||||   || ||||||||||| || |||| |||||| || | |||||||||  ||||||||| |||| ||| ||| |||||||||| |    
15589060 tgaacatcaatatttattttgaaaaaccctctattaatgagagaaaaatcaagtgacaaactctaaaaaatatttcactttatcaaacaatattacaaca 15588961  T
239 ttctctccactct 251  Q
    || ||||||||||    
15588960 ttttctccactct 15588948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 26504850 - 26504895
Alignment:
57 tcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaa 102  Q
    |||||||| |||| | ||||||||||||||||| ||||||||||||    
26504850 tcgacgagtttaatggaagtgtaaattaaaatttcaaaatccaaaa 26504895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 34 - 412
Target Start/End: Complemental strand, 14174317 - 14173937
Alignment:
34 agctctgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnn 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||       
14174317 agctctgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagtga 14174218  T
134 nnnnn----tgaacaccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaat 229  Q
             ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
14174217 taaaaaaaatgaacaccaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaat 14174118  T
230 attacaatattctctccactctctnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcac 329  Q
    ||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
14174117 attacaatattctctccactctctcacacacaca--agagatacaatatagtgtttcccgtgagacctacttctattctaatgctattattttatagcac 14174020  T
330 ctagaagttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcac 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
14174019 ctagaagttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctcac 14173937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 34 - 412
Target Start/End: Original strand, 28611553 - 28611933
Alignment:
34 agctctgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnn 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||      
28611553 agctctgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcga 28611652  T
134 nnnnn----tgaacaccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaat 229  Q
             ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
28611653 taaaaaaaatgaacaccaatatttaacgtgaaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaat 28611752  T
230 attacaatattctctccactctctnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcac 329  Q
    ||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
28611753 attacaatattctctccactctctcacacacaca--agagatacaatatagtgtttcccgtgagacctacttctattctaatgctattattttatagcac 28611850  T
330 ctagaagttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcac 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
28611851 ctagaagttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctcac 28611933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 48 - 412
Target Start/End: Complemental strand, 14179057 - 14178691
Alignment:
48 ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnn----tgaac 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||           |||||    
14179057 ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcaataaaaaaaatgaac 14178958  T
144 accaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctc 243  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
14178957 accaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctc 14178858  T
244 tccactctctnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttataga 343  Q
    ||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
14178857 tccactctctcacacacaca--agagatacaatatagtgtttcccgtgagacctacttctattctaatgctattattttatagcacctagaagttataga 14178760  T
344 gatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcac 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
14178759 gatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctcac 14178691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 48 - 412
Target Start/End: Original strand, 28606805 - 28607171
Alignment:
48 ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnn----tgaac 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||           | |||    
28606805 ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcgataaaaaaaattaac 28606904  T
144 accaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctc 243  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
28606905 accaatatttaacgtgaaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctc 28607004  T
244 tccactctctnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttataga 343  Q
    ||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
28607005 tccactctctcacacacaca--agagatacaatatagtgtttcccgtgagacctacttctattctaatgctattattttatagcacctagaagttataga 28607102  T
344 gatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcac 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
28607103 gatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctcac 28607171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 49 - 412
Target Start/End: Complemental strand, 44161949 - 44161586
Alignment:
49 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnn----tgaaca 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||    
44161949 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcgataaaaaaaatgaaca 44161850  T
145 ccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctct 244  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
44161849 ccaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaat--tctct 44161752  T
245 ccactctctnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagag 344  Q
    |||||||||            ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
44161751 ccactctcttacacacaca--agagatacaatatagtgtttcccgtaagacctacttctattctaatgctattattttatagcacctagaagttatagag 44161654  T
345 atgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcac 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
44161653 atgatacccacccggtgtatttttcccacactctctggatttactcaacactctattattcctctcac 44161586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 49 - 404
Target Start/End: Complemental strand, 11104829 - 11104477
Alignment:
49 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnn-tgaacacca 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||        |||||||||    
11104829 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagctgtagcgataaaaatgaacacca 11104730  T
148 atatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctcca 247  Q
    ||||||||| | ||||| |||||||||  ||||| ||| |||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||    
11104729 atatttaacatagaaaatcctctaatatcgagggtaaa-ccacgggacaaactccgaaaaatattccaccatatctaagaatattacaatattctctcca 11104631  T
248 ctctctnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatg 347  Q
    ||||||            ||||||||||||||||||||||||||||||| ||| |||||| ||||||||||| ||||| |||||||||||||||||||||    
11104630 ctctcttacacacaa---agagatacaatatagtgtttcccgtgagacccactcctattcaaatgctattattttataacacctagaagttatagagatg 11104534  T
348 atacccacccggtgtatttttcccacactctctggatttactcaacactctattttt 404  Q
    ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
11104533 atatccacccggtgtatttttcctacactctctggatttactcaacactctattttt 11104477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 48 - 350
Target Start/End: Original strand, 48826701 - 48827000
Alignment:
48 ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnt--gaacac 145  Q
    |||||||| |||||||||||||||||| |||||||||||||| |||||| |||  |||||||||||||||||||||||||||||          ||||||    
48826701 ttgttgggatcgacgagcttaacgcaattgtaaattaaaatttcaaaattcaa--gagattggatcttgcagcgcagcggtagcgatagaaaaagaacac 48826798  T
146 caatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc 245  Q
    ||||||||||||||||||| |||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||     
48826799 caatatttaacgtggaaaatcctctaataccgagggaaaaatcacgggacaa-ctccgaaaaatattccactatattaaagaatattacaatattctctt 48826897  T
246 cactctctnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagaga 345  Q
    | ||||||            |||||||||||||||||||||||||||||   ||| |||||  ||||||||||| |||||||||||||||||||||||||    
48826898 cgctctct--tacacacacaagagatacaatatagtgtttcccgtgagattcactcctatttgaatgctattattttatagcacctagaagttatagaga 48826995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 144 - 245
Target Start/End: Original strand, 48708155 - 48708256
Alignment:
144 accaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctc 243  Q
    ||||||||||||| || ||||| || ||||||| || ||||||||||| |||||||||| ||||||||| || ||||||||| |||||||||||||||||    
48708155 accaatatttaacatgaaaaactctataatactaagagaaaaaccacgtgacaaactccaaaaaatatttcattatattaaaaaatattacaatattctc 48708254  T
244 tc 245  Q
    ||    
48708255 tc 48708256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 160 - 253
Target Start/End: Original strand, 24726288 - 24726381
Alignment:
160 gaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctct 253  Q
    ||||||| |||||||   |||||||| ||||| ||||||||| ||||||||||||| |||||||||||| || | ||||||||||||| |||||    
24726288 gaaaaccatctaatatcaagggaaaagccacgagacaaactctgaaaaatattccattatattaaagaacataataatattctctccattctct 24726381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 49 - 412
Target Start/End: Complemental strand, 34907503 - 34907139
Alignment:
49 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnn---tgaacac 145  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||          |||||||    
34907503 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcgataaaaaaatgaacac 34907404  T
146 caatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc 245  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
34907403 caatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc 34907304  T
246 cactctctnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagaga 345  Q
    ||||||||            |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
34907303 cactctctcacacacaca--agagatacaatatagtgtttcccgtgagacctacttttattctaatgctattattttatagcacctagaagttatagaga 34907206  T
346 tgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcac 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
34907205 tgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctcac 34907139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 49 - 412
Target Start/End: Original strand, 37040426 - 37040791
Alignment:
49 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnn----tgaaca 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||           ||||||    
37040426 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaaagactggatcttgcagcgcagcggtagcgataaaaaaaatgaaca 37040525  T
145 ccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctct 244  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
37040526 ccaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattttct 37040625  T
245 ccactctctnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagag 344  Q
    |||||||||            |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
37040626 ccactctctcacacacaca--agagatacaatatagtgttttccgtgagacctacttctattctaatgctattattttatagcacctagaagttatagag 37040723  T
345 atgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcac 412  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
37040724 atgatacccacccgatgtatttttcccacactctctggatttactcaacactctatttttcctctcac 37040791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 34 - 401
Target Start/End: Complemental strand, 15290609 - 15290243
Alignment:
34 agctctgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaa-gagattggatcttgcagcgcagcggtagcn 132  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||  ||||     
15290609 agctctgataccacttgttgggctcgacgagcttaacgcaattgtaaattaaaatttcaaaatccaaaaagagattggatcttgcagcgcagccttagcg 15290510  T
133 nnnnnn----tgaacaccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaa 228  Q
              ||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||| ||| || |||||||||||| |||||    
15290509 ataaaaaaaatgaacaccaatatttaacgtggaaaaccctctaataccgaggtataaaccacgggacaaactccaaaagattttccactatatttaagaa 15290410  T
229 tattacaatattctctccactctctnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagca 328  Q
    |||||||||||||||||||||||||            |||||||||||||||||||| |||||||||| ||| |||||| ||||||||  ||||  ||||    
15290409 tattacaatattctctccactctct--tacacacacaagagatacaatatagtgttt-ccgtgagacccactcctattcgaatgctat--tatttcagca 15290315  T
329 cctagaagttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatt 401  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||    
15290314 cctagaagttatagagatgatacccacccggtgtattttt-ccacactttctggatttagtcaacactctatt 15290243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 49 - 351
Target Start/End: Complemental strand, 12099361 - 12099060
Alignment:
49 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnn-tgaacacca 147  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||  ||||||||||| || || ||||        |||| | ||    
12099361 tgttgggctcgacgagtttaacgcgagtgtaaattaaaattccaaaatccaaaagagatatgatcttgcagctcaccgatagcgataaaaatgaaaagca 12099262  T
148 atatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctcca 247  Q
    |||||| ||||| |||||||||||||   || |||||||||| ||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||    
12099261 atattttacgtgaaaaaccctctaatgacgaaggaaaaaccaagggacaaactccgaaaaaatttcaactatattaaagaatattacaatattctctcca 12099162  T
248 ctctctnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatg 347  Q
    ||||||            ||||| ||||||| |||||||  |||||||  ||| |||||| |||| |||||| ||||| |||||| ||||||||||||||    
12099161 ctctct--tacacgcacaagagacacaatattgtgtttctagtgagactcactcctattcaaatgatattattttataacacctaaaagttatagagatg 12099064  T
348 atac 351  Q
    ||||    
12099063 atac 12099060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 196 - 406
Target Start/End: Complemental strand, 12082227 - 12082021
Alignment:
196 aaactccgaaaaatattccactatattaaagaatattacaatattctctccactctctnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagac 295  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||            |||||||||||||||||||||   ||||||    
12082227 aaactccaaaaaatattccactatattaa-gaatattacaatattttctccactctcttacacggaaa--agagatacaatatagtgtttctaatgagac 12082131  T
296 ctacttctattctaatgctattatattatagcacctagaagttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaacac 395  Q
       || |||||| |||| |||||| ||||||| |||||||||||||||||| ||||| ||||| | |||||||||| |  | ||||||||||| ||||||    
12082130 tcgctcctattcaaatgttattattttatagcgcctagaagttatagagataatacctacccgatatatttttccc-ctttttctggatttacccaacac 12082032  T
396 tctatttttct 406  Q
    |||| ||||||    
12082031 tctaattttct 12082021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 49 - 131
Target Start/End: Complemental strand, 12084751 - 12084669
Alignment:
49 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagc 131  Q
    |||||||||| ||||||||||| | || ||||||||||||| |||||||||| ||| ||||||||||| |||||| |||||||    
12084751 tgttgggctcaacgagcttaacacgagggtaaattaaaatttcaaaatccaatagacattggatcttgtagcgcaacggtagc 12084669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 141 - 253
Target Start/End: Original strand, 2757307 - 2757418
Alignment:
141 aacaccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatatt 240  Q
    |||||||||||||||  || ||| |||| |||| || | |||||||||| | |||||| |  ||||| |||||||||||||| || |||||| || ||||    
2757307 aacaccaatatttaatatgaaaacccctttaatgcttaaggaaaaaccatgagacaaattttgaaaa-tattccactatatttaaaaatattgcactatt 2757405  T
241 ctctccactctct 253  Q
    |||||||||||||    
2757406 ctctccactctct 2757418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 109
Target Start/End: Original strand, 2757199 - 2757273
Alignment:
35 gctctgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattg 109  Q
    ||||| ||| ||||||||| | || |||||||||   ||||||||||||||||||||||||| ||||||| ||||    
2757199 gctcttatatcacttgttgtgttcaacgagcttattacaagtgtaaattaaaattccaaaattcaaaagaaattg 2757273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 49 - 396
Target Start/End: Original strand, 29106878 - 29107224
Alignment:
49 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnn-tgaacacca 147  Q
    ||||||| |||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||        |||||||||    
29106878 tgttgggatcgaggagcttaatgcaagtgtaaattaaaattccaaaatccaaaaaagattggatcttgcagcgcagcggtagcgttaaaaatgaacacca 29106977  T
148 atatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctcca 247  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
29106978 atatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctcca 29107077  T
248 ctctctnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatg 347  Q
    ||||||            |||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||    
29107078 ctctct--tacacacacaagagatacaa-atagtgtttcccgtgagacctacttctattctaatgctattattttttagcacctagaagttataaagatg 29107174  T
348 ata-cccacccggtgtatttttcccacactctctggatttactcaacact 396  Q
    ||| |||||||  |||||||||||||||||||||||||||||||||||||    
29107175 ataccccacccaatgtatttttcccacactctctggatttactcaacact 29107224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 48 - 404
Target Start/End: Original strand, 42910992 - 42911346
Alignment:
48 ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnn-tgaacacc 146  Q
    |||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||| |||||||||||||||||| | |        ||||||||    
42910992 ttgttgggctcgacgagcttaacgcaagtggaaattaaaattttaaaatccaaaagagattagatcttgcagcgcagcggcaacgataaaaatgaacacc 42911091  T
147 aatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctcc 246  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
42911092 aatatttaacatggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaa-tattccactatatttaagaatattacaatattctctcc 42911190  T
247 actctctnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagat 346  Q
    |||||||            | ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
42911191 actctctcacacacaca--aaagatacaatatagtgtttcccttgagacctacttctattctaatgctattattttatagcaccaagaagttatagagat 42911288  T
347 gatacccacccggtgtatttttcccacactctctggatttactcaacactctattttt 404  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||    
42911289 gatacccacccagtgtattttttccacactctctggatttactcaacactctattttt 42911346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 34 - 129
Target Start/End: Original strand, 38994684 - 38994779
Alignment:
34 agctctgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggta 129  Q
    |||||||||||||||||||||||| ||||| ||||| || |||||||||||||||||||||| |||||  | |||||||||||||| |||||||||    
38994684 agctctgataccacttgttgggcttgacgatcttaatgctagtgtaaattaaaattccaaaacccaaacaaaattggatcttgcagtgcagcggta 38994779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 140 - 230
Target Start/End: Original strand, 38997230 - 38997320
Alignment:
140 gaacaccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaata 230  Q
    ||||| |||||||| |||| |||||||||||||||  ||  ||||||| |||||||||||||| ||||||| |||| ||||||||||||||    
38997230 gaacagcaatattttacgtcgaaaaccctctaatatcgaacgaaaaactacgggacaaactccaaaaaataatccattatattaaagaata 38997320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 104
Target Start/End: Original strand, 38997123 - 38997193
Alignment:
34 agctctgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaga 104  Q
    |||||| |||| |||||||||| |||| | |||||| ||  |||||||||||||||||| |||||||||||    
38997123 agctctaatactacttgttgggttcgaagggcttaatgcgggtgtaaattaaaattccagaatccaaaaga 38997193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 48 - 412
Target Start/End: Complemental strand, 8539549 - 8539183
Alignment:
48 ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnn--tgaacac 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |         ||||||     
8539549 ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaattctaaaagagattggatcttgcagcgcagcggtaacaataaaaaatgaacat 8539450  T
146 caatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc 245  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||    
8539449 caatatttaacgtggaaaaccctctaataccgagggaaaaatcacgggacaaactccgaaagatattccactatatttaagaatattacaatattatctc 8539350  T
246 cactctctnnnnnnnnnnnnagagatacaa---tatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatag 342  Q
    ||||||||            ||||||||||   |||||||||| |||||||||| ||| |||||| | ||||||||| ||| |||||||| |||||||||    
8539349 cactctct--tacacacacaagagatacaatattatagtgttt-ccgtgagacccactcctattcgattgctattattttacagcacctaaaagttatag 8539253  T
343 agatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcac 412  Q
    |||||||||||| ||| |||||||||||||||||||||| ||||||| |||||| |||||||| ||||||    
8539252 agatgatacccatccgatgtatttttcccacactctctgaatttactgaacactatatttttcctctcac 8539183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 1e-48; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 267 - 405
Target Start/End: Complemental strand, 51302306 - 51302168
Alignment:
267 gagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatgatacccacccggtgtattt 366  Q
    |||||||||||||||||||||||||||||| ||| |||||| ||||| ||| | ||||||||||||||||||||||||||||| ||||||||||||||||    
51302306 gagatacaatatagtgtttcccgtgagacccactcctattcgaatgcaattgttttatagcacctagaagttatagagatgattcccacccggtgtattt 51302207  T
367 ttcccacactctctggatttactcaacactctatttttc 405  Q
    |  ||||||||||||||||||||||| ||||||||||||    
51302206 tatccacactctctggatttactcaatactctatttttc 51302168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 34 - 131
Target Start/End: Complemental strand, 51303034 - 51302937
Alignment:
34 agctctgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagc 131  Q
    ||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
51303034 agctccgataccacttgttgggatcgacgagcttaatgcaagtgtaaattaaaatttcaaaatccaaaacagattggatcttgcagcgcagcggtagc 51302937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 51302344 - 51302308
Alignment:
139 tgaacaccaatatttaacgtggaaaaccctctaatac 175  Q
    |||||||||||||||||||||||||||||||||||||    
51302344 tgaacaccaatatttaacgtggaaaaccctctaatac 51302308  T

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Target: chr6 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 49 - 230
Target Start/End: Original strand, 2100199 - 2100379
Alignment:
49 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattgga-tcttgcagcgcagcggtagcnnnnnnnt-gaacacc 146  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||| || | ||||||| || || ||         | ||||| |    
2100199 tgttgggctcgacgagcttaacacaagtgtaaattaaaattccaaaattcataagagatttgaattttgcagcacaacgataatgataaaattgaacatc 2100298  T
147 aatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaata 230  Q
    ||||||||| |||||||||||| ||||| |||| |||||||   ||| ||||||||||||||||||||||||||||||||||||    
2100299 aatatttaaggtggaaaaccctttaataatgagcgaaaaac---ggggcaaactccgaaaaatattccactatattaaagaata 2100379  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 253
Target Start/End: Original strand, 2100723 - 2100753
Alignment:
223 aaagaatattacaatattctctccactctct 253  Q
    |||||||||||||||||||||||||||||||    
2100723 aaagaatattacaatattctctccactctct 2100753  T

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