View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5051-Insertion-1 (Length: 753)

Name: NF5051-Insertion-1
Description: NF5051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5051-Insertion-1
NF5051-Insertion-1
[»] chr7 (14 HSPs)
chr7 (157-441)||(31281364-31281649)
chr7 (465-753)||(31281671-31281959)
chr7 (7-110)||(31281259-31281362)
chr7 (568-622)||(8615021-8615075)
chr7 (573-625)||(8683065-8683117)
chr7 (565-621)||(24991780-24991836)
chr7 (571-626)||(25888894-25888949)
chr7 (571-625)||(39801701-39801755)
chr7 (548-590)||(42219376-42219418)
chr7 (561-602)||(3584222-3584263)
chr7 (561-622)||(18714446-18714507)
chr7 (584-625)||(37251199-37251240)
chr7 (561-622)||(42043068-42043129)
chr7 (571-620)||(46987086-46987135)
[»] chr3 (15 HSPs)
chr3 (548-619)||(20079723-20079794)
chr3 (548-620)||(47377338-47377410)
chr3 (580-626)||(22843458-22843504)
chr3 (571-620)||(8113574-8113623)
chr3 (548-625)||(18870714-18870791)
chr3 (548-625)||(45431943-45432020)
chr3 (550-625)||(5349523-5349598)
chr3 (562-617)||(40575612-40575667)
chr3 (563-597)||(12746361-12746395)
chr3 (571-625)||(33633330-33633384)
chr3 (576-625)||(1149086-1149135)
chr3 (561-626)||(5428438-5428503)
chr3 (576-625)||(16980371-16980420)
chr3 (561-625)||(24120422-24120487)
chr3 (576-625)||(53996294-53996343)
[»] chr8 (13 HSPs)
chr8 (548-626)||(17704007-17704085)
chr8 (561-597)||(24696008-24696044)
chr8 (571-625)||(13286126-13286180)
chr8 (571-619)||(15438454-15438502)
chr8 (571-619)||(15529758-15529806)
chr8 (576-615)||(11603854-11603893)
chr8 (548-597)||(18147479-18147528)
chr8 (571-620)||(19778065-19778114)
chr8 (548-597)||(21589190-21589239)
chr8 (576-621)||(30623292-30623337)
chr8 (548-597)||(33743598-33743647)
chr8 (576-625)||(37015853-37015902)
chr8 (561-602)||(42208471-42208512)
[»] chr6 (12 HSPs)
chr6 (552-597)||(2692238-2692283)
chr6 (561-605)||(3808120-3808164)
chr6 (561-597)||(6864135-6864171)
chr6 (573-625)||(7083006-7083058)
chr6 (561-601)||(8809325-8809365)
chr6 (571-625)||(655761-655815)
chr6 (549-598)||(1918448-1918497)
chr6 (571-620)||(4450262-4450311)
chr6 (561-598)||(8130461-8130498)
chr6 (576-625)||(8810635-8810684)
chr6 (548-625)||(9923235-9923312)
chr6 (561-602)||(31971547-31971588)
[»] chr4 (18 HSPs)
chr4 (548-625)||(7230275-7230352)
chr4 (571-625)||(19854560-19854614)
chr4 (561-619)||(37921747-37921805)
chr4 (571-620)||(7922262-7922311)
chr4 (548-625)||(50362128-50362205)
chr4 (548-620)||(54500569-54500641)
chr4 (566-625)||(36203231-36203290)
chr4 (559-590)||(42594572-42594603)
chr4 (548-615)||(56551581-56551648)
chr4 (571-625)||(10303523-10303577)
chr4 (561-619)||(11286783-11286841)
chr4 (576-626)||(31780739-31780789)
chr4 (561-631)||(37193238-37193308)
chr4 (576-625)||(6087742-6087791)
chr4 (576-605)||(6520086-6520115)
chr4 (548-625)||(12322668-12322745)
chr4 (548-601)||(16733508-16733561)
chr4 (576-625)||(34247435-34247484)
[»] chr1 (10 HSPs)
chr1 (548-625)||(1794591-1794668)
chr1 (562-625)||(34632164-34632227)
chr1 (548-602)||(46707890-46707944)
chr1 (548-619)||(15854077-15854148)
chr1 (570-625)||(28032279-28032334)
chr1 (571-625)||(52441523-52441577)
chr1 (571-620)||(9639829-9639878)
chr1 (549-622)||(34521180-34521253)
chr1 (571-620)||(38448878-38448927)
chr1 (561-594)||(49868037-49868070)
[»] chr5 (16 HSPs)
chr5 (548-613)||(23218967-23219032)
chr5 (548-601)||(31305875-31305928)
chr5 (573-625)||(1642329-1642381)
chr5 (561-605)||(18557869-18557913)
chr5 (562-622)||(20927637-20927697)
chr5 (548-620)||(37614416-37614488)
chr5 (570-621)||(9123856-9123907)
chr5 (576-619)||(13409429-13409472)
chr5 (561-627)||(16701583-16701649)
chr5 (571-625)||(18331702-18331756)
chr5 (548-597)||(3389185-3389234)
chr5 (548-625)||(5485181-5485258)
chr5 (576-625)||(18489093-18489142)
chr5 (576-625)||(30893928-30893977)
chr5 (576-625)||(36321511-36321560)
chr5 (548-625)||(37932325-37932402)
[»] chr2 (17 HSPs)
chr2 (548-597)||(36359337-36359386)
chr2 (569-625)||(7206120-7206176)
chr2 (548-596)||(32204568-32204616)
chr2 (574-621)||(14944161-14944208)
chr2 (576-623)||(20120738-20120785)
chr2 (571-621)||(4056789-4056839)
chr2 (548-622)||(13000683-13000757)
chr2 (561-602)||(4138009-4138050)
chr2 (580-625)||(4238754-4238799)
chr2 (571-620)||(24593376-24593425)
chr2 (571-620)||(28771582-28771631)
chr2 (548-597)||(30045476-30045525)
chr2 (548-597)||(30050639-30050688)
chr2 (548-597)||(30141683-30141732)
chr2 (574-627)||(30762510-30762563)
chr2 (571-620)||(39068720-39068769)
chr2 (548-597)||(43004671-43004720)
[»] scaffold0712 (1 HSPs)
scaffold0712 (557-601)||(7234-7278)
[»] scaffold0709 (1 HSPs)
scaffold0709 (557-601)||(7252-7296)
[»] scaffold1619 (1 HSPs)
scaffold1619 (561-598)||(1053-1090)
[»] scaffold0896 (1 HSPs)
scaffold0896 (576-625)||(3136-3185)


Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-131; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 157 - 441
Target Start/End: Original strand, 31281364 - 31281649
Alignment:
Q  157 tgttaagtaatttgctgtttattactttattcttttaccttttgggatctaaagtcaaaattgcatgcagttgtacaaacaatgtatttctcaaatcgcc 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31281364 tgttaagtaatttgctgtttattactttattcttttaccttttgggatctaaagtcaaaattgcatgcagttgtacaaacaatgtatttctcaaatcgcc 31281463  T
Q  257 cgattaagataagacgggtcaaattt-aaaaagtaaaactacattttggacgttctattttaatcggactaacaaaaatgtgtgcattgaagaactacat 355  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||| ||||||||||||||    
T  31281464 cgattaagataagacgggtcaaatttaaaaaagtaaaactacattttggacgttctatcttaatcgaacgaacaaaaatgtgtgcgttgaagaactacat 31281563  T
Q  356 gcagttttaaatgcattcaatccacatcctatcttttgtgacattagcagtggaataaaaaattttaaatttattcttaattgtga 441  Q
     |||||||||||||||||||| |||||||||||||||||||||||||||||  |||||||| || |||||||||||||||||||||    
T  31281564 acagttttaaatgcattcaattcacatcctatcttttgtgacattagcagtataataaaaatttctaaatttattcttaattgtga 31281649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 465 - 753
Target Start/End: Original strand, 31281671 - 31281959
Alignment:
Q  465 gctagacttgcgttacgagattaacccatctcctggatttacttacgtaaaaggtaaagtagacgcacaaaatannnnnnnnatgtggtggccaatgttt 564  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |         ||||||| ||||| ||||    
T  31281671 gctagacttgcgttacgagattaacccatctcttgaatttacttacgtaaaaggtaaagtagacgcacaaatttttttttttatgtggtcgccaaggttt 31281770  T
Q  565 gaatctcggatcttgcatatattatgcattgtctttactaagagagctaagctcacaaggatccacaaaatattttaacgcagctaaagaagggtggtaa 664  Q
    ||||| | || ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  31281771 gaatcccagaccttgcatatattatgcattgtttttaccaagagagctaagctcacaaggatccacaaaatattttaacgcaactaaagaagggtggtaa 31281870  T
Q  665 acatgctacaattgaatggattagttatggttttcaagagttgatcaaaaccaatttcaaggtcaagcaataggctataacagtaacta 753  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31281871 acatgctacaattgaatggattagttatggttttcaagagttgatcaaaaccaatttcaaggtcaagcaataggctataacaataacta 31281959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 7 - 110
Target Start/End: Original strand, 31281259 - 31281362
Alignment:
Q  7 agtatgttgtaggaaaaatgaatatcccacaatcggacaaatggtttgaatctcatcaaaggcagtgctgatatattactatttagtgttcgaccatgct 106  Q
    ||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  31281259 agtatattgtagaaaaaatgaatatcccacaattggacaaatggtttgaatctcatcaaaggaagtgctgatatattactatttagtgttcgaccatgct 31281358  T
Q  107 taaa 110  Q
    ||||    
T  31281359 taaa 31281362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 568 - 622
Target Start/End: Complemental strand, 8615075 - 8615021
Alignment:
Q  568 tctcggatcttgcatatattatgcattgtctttactaagagagctaagctcacaa 622  Q
    ||||||| |||||||||||||||||||||| |||| ||  |||||||||||||||    
T  8615075 tctcggaccttgcatatattatgcattgtccttaccaactgagctaagctcacaa 8615021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 573 - 625
Target Start/End: Complemental strand, 8683117 - 8683065
Alignment:
Q  573 gatcttgcatatattatgcattgtctttactaagagagctaagctcacaagga 625  Q
    |||||||||||||||||||||||||| ||| ||  ||||||||||||| ||||    
T  8683117 gatcttgcatatattatgcattgtctataccaactgagctaagctcacgagga 8683065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 565 - 621
Target Start/End: Complemental strand, 24991836 - 24991780
Alignment:
Q  565 gaatctcggatcttgcatatattatgcattgtctttactaagagagctaagctcaca 621  Q
    ||||| || |||||||||||||||||||||||| |||| ||  ||||||||||||||    
T  24991836 gaatcccgtatcttgcatatattatgcattgtccttaccaactgagctaagctcaca 24991780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 571 - 626
Target Start/End: Complemental strand, 25888949 - 25888894
Alignment:
Q  571 cggatcttgcatatattatgcattgtctttactaagagagctaagctcacaaggat 626  Q
    |||| |||||||||||||||||| ||| |||| ||  |||||||||||||||||||    
T  25888949 cggaccttgcatatattatgcatcgtccttaccaactgagctaagctcacaaggat 25888894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 571 - 625
Target Start/End: Complemental strand, 39801755 - 39801701
Alignment:
Q  571 cggatcttgcatatattatgcattgtctttactaagagagctaagctcacaagga 625  Q
    |||||||||||||||||||||||||||  ||| ||  ||||||||||||| ||||    
T  39801755 cggatcttgcatatattatgcattgtccataccaactgagctaagctcacgagga 39801701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 548 - 590
Target Start/End: Original strand, 42219376 - 42219418
Alignment:
Q  548 tgtggtggccaatgtttgaatctcggatcttgcatatattatg 590  Q
    |||||||||| ||||||||| |||||| |||||||||||||||    
T  42219376 tgtggtggccgatgtttgaacctcggaccttgcatatattatg 42219418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 561 - 602
Target Start/End: Complemental strand, 3584263 - 3584222
Alignment:
Q  561 gtttgaatctcggatcttgcatatattatgcattgtctttac 602  Q
    |||||||||||| | |||||||||||||||||||||| ||||    
T  3584263 gtttgaatctcgtaccttgcatatattatgcattgtccttac 3584222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 561 - 622
Target Start/End: Complemental strand, 18714507 - 18714446
Alignment:
Q  561 gtttgaatctcggatcttgcatatattatgcattgtctttactaagagagctaagctcacaa 622  Q
    ||||||| | |||| |||||||||||||||||||||| |||| ||  |||||||||| ||||    
T  18714507 gtttgaaccccggaccttgcatatattatgcattgtccttaccaactgagctaagctgacaa 18714446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 584 - 625
Target Start/End: Complemental strand, 37251240 - 37251199
Alignment:
Q  584 tattatgcattgtctttactaagagagctaagctcacaagga 625  Q
    ||||||||||||| ||||||||| ||||||||||||| ||||    
T  37251240 tattatgcattgtgtttactaagtgagctaagctcacgagga 37251199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 561 - 622
Target Start/End: Original strand, 42043068 - 42043129
Alignment:
Q  561 gtttgaatctcggatcttgcatatattatgcattgtctttactaagagagctaagctcacaa 622  Q
    |||||||||||||| |||  |||||||||||||||||  ||| ||  |||||||||||||||    
T  42043068 gtttgaatctcggaccttaaatatattatgcattgtccataccaactgagctaagctcacaa 42043129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 571 - 620
Target Start/End: Complemental strand, 46987135 - 46987086
Alignment:
Q  571 cggatcttgcatatattatgcattgtctttactaagagagctaagctcac 620  Q
    |||| |||||||||||||||||||||| |||| ||  |||||||||||||    
T  46987135 cggaccttgcatatattatgcattgtccttaccaactgagctaagctcac 46987086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 548 - 619
Target Start/End: Complemental strand, 20079794 - 20079723
Alignment:
Q  548 tgtggtggccaatgtttgaatctcggatcttgcatatattatgcattgtctttactaagagagctaagctca 619  Q
    |||||||||| | |||||||||| |||||||||||||||||| |||||||| ||||||  ||| ||||||||    
T  20079794 tgtggtggccgaggtttgaatcttggatcttgcatatattatacattgtctctactaactgagttaagctca 20079723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 548 - 620
Target Start/End: Original strand, 47377338 - 47377410
Alignment:
Q  548 tgtggtggccaatgtttgaatctcggatcttgcatatattatgcattgtctttactaagagagctaagctcac 620  Q
    |||||||||||||||||||| |||| | |||| ||||||||||||||||| |||| ||  ||| |||||||||    
T  47377338 tgtggtggccaatgtttgaacctcgaaccttgtatatattatgcattgtccttaccaactgagttaagctcac 47377410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 580 - 626
Target Start/End: Complemental strand, 22843504 - 22843458
Alignment:
Q  580 catatattatgcattgtctttactaagagagctaagctcacaaggat 626  Q
    ||||||||||||||||||||||||||  |||||||||||||| ||||    
T  22843504 catatattatgcattgtctttactaactgagctaagctcacatggat 22843458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 571 - 620
Target Start/End: Original strand, 8113574 - 8113623
Alignment:
Q  571 cggatcttgcatatattatgcattgtctttactaagagagctaagctcac 620  Q
    ||||||||||||||||||||||||||| |||| ||  |||||||||||||    
T  8113574 cggatcttgcatatattatgcattgtccttaccaactgagctaagctcac 8113623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 548 - 625
Target Start/End: Original strand, 18870714 - 18870791
Alignment:
Q  548 tgtggtggccaatgtttgaatctcggatcttgcatatattatgcattgtctttactaagagagctaagctcacaagga 625  Q
    |||||||||| | |||||||||  ||| ||||||||||||||||||||||  ||| ||  ||||||||||||| ||||    
T  18870714 tgtggtggccgaggtttgaatcatggaccttgcatatattatgcattgtccctaccaactgagctaagctcacgagga 18870791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 548 - 625
Target Start/End: Complemental strand, 45432020 - 45431943
Alignment:
Q  548 tgtggtggccaatgtttgaatctcggatcttgcatatattatgcattgtctttactaagagagctaagctcacaagga 625  Q
    |||||||||||  ||||||| | |||| ||||||||||||||||||||||  ||| ||  |||||||||| |||||||    
T  45432020 tgtggtggccagggtttgaaccccggaccttgcatatattatgcattgtccctaccaactgagctaagctaacaagga 45431943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 550 - 625
Target Start/End: Complemental strand, 5349598 - 5349523
Alignment:
Q  550 tggtggccaatgtttgaatctcggatcttgcatatattatgcattgtctttactaagagagctaagctcacaagga 625  Q
    |||||||||  ||||||| |||||| ||||||||||| |||||||||| |||| ||| ||| ||| ||||| ||||    
T  5349598 tggtggccagggtttgaacctcggaccttgcatatataatgcattgtccttaccaagtgagttaaactcacgagga 5349523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 562 - 617
Target Start/End: Original strand, 40575612 - 40575667
Alignment:
Q  562 tttgaatctcggatcttgcatatattatgcattgtctttactaagagagctaagct 617  Q
    |||||| | |||| ||||||||||||||||||||||| ||||||  ||||||||||    
T  40575612 tttgaaccccggaccttgcatatattatgcattgtctatactaattgagctaagct 40575667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 563 - 597
Target Start/End: Original strand, 12746361 - 12746395
Alignment:
Q  563 ttgaatctcggatcttgcatatattatgcattgtc 597  Q
    |||||||||||| ||||||||||||||||||||||    
T  12746361 ttgaatctcggaccttgcatatattatgcattgtc 12746395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 571 - 625
Target Start/End: Original strand, 33633330 - 33633384
Alignment:
Q  571 cggatcttgcatatattatgcattgtctttactaagagagctaagctcacaagga 625  Q
    |||||||| ||||||||||||||||||| ||||||  ||| ||||||||| ||||    
T  33633330 cggatcttacatatattatgcattgtctatactaactgagttaagctcacgagga 33633384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 576 - 625
Target Start/End: Original strand, 1149086 - 1149135
Alignment:
Q  576 cttgcatatattatgcattgtctttactaagagagctaagctcacaagga 625  Q
    |||||||||||||||||||||| |||| ||  ||||||||||||| ||||    
T  1149086 cttgcatatattatgcattgtccttaccaactgagctaagctcacgagga 1149135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 561 - 626
Target Start/End: Original strand, 5428438 - 5428503
Alignment:
Q  561 gtttgaatctcggatcttgcatatattatgcattgtctttactaagagagctaagctcacaaggat 626  Q
    |||||||||  ||| ||||||||||||||||||||| ||||  ||  ||||||| |||||||||||    
T  5428438 gtttgaatcctggaccttgcatatattatgcattgtttttatcaattgagctaaactcacaaggat 5428503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 576 - 625
Target Start/End: Original strand, 16980371 - 16980420
Alignment:
Q  576 cttgcatatattatgcattgtctttactaagagagctaagctcacaagga 625  Q
    |||||||||||||||||||||| |||| ||  ||||||||||||| ||||    
T  16980371 cttgcatatattatgcattgtccttaccaactgagctaagctcacgagga 16980420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 561 - 625
Target Start/End: Original strand, 24120422 - 24120487
Alignment:
Q  561 gtttgaatctcggatcttgcatatattatgca-ttgtctttactaagagagctaagctcacaagga 625  Q
    ||||||| | |||||||||||||||||||||| |||||| ||| ||  ||||||||||||| ||||    
T  24120422 gtttgaaccgcggatcttgcatatattatgcatttgtctctaccaactgagctaagctcacgagga 24120487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 576 - 625
Target Start/End: Complemental strand, 53996343 - 53996294
Alignment:
Q  576 cttgcatatattatgcattgtctttactaagagagctaagctcacaagga 625  Q
    ||||||||||||||||||||||  ||| ||  ||||||||||||||||||    
T  53996343 cttgcatatattatgcattgtccataccaactgagctaagctcacaagga 53996294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 548 - 626
Target Start/End: Complemental strand, 17704085 - 17704007
Alignment:
Q  548 tgtggtggccaatgtttgaatctcggatcttgcatatattatgcattgtctttactaagagagctaagctcacaaggat 626  Q
    |||||||||| | ||||||||| | || |||||||||||||||||||||| |||| ||  ||||||||||||| |||||    
T  17704085 tgtggtggccgaggtttgaatcacagaccttgcatatattatgcattgtccttaccaactgagctaagctcacgaggat 17704007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 561 - 597
Target Start/End: Original strand, 24696008 - 24696044
Alignment:
Q  561 gtttgaatctcggatcttgcatatattatgcattgtc 597  Q
    |||||||||||||||||||||||||||||||||||||    
T  24696008 gtttgaatctcggatcttgcatatattatgcattgtc 24696044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 571 - 625
Target Start/End: Complemental strand, 13286180 - 13286126
Alignment:
Q  571 cggatcttgcatatattatgcattgtctttactaagagagctaagctcacaagga 625  Q
    |||||||||||||||||||||||||||| ||| ||  ||||||||||||| ||||    
T  13286180 cggatcttgcatatattatgcattgtctataccaactgagctaagctcacgagga 13286126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 571 - 619
Target Start/End: Complemental strand, 15438502 - 15438454
Alignment:
Q  571 cggatcttgcatatattatgcattgtctttactaagagagctaagctca 619  Q
    |||| |||||||||||||||||||||| |||| ||| ||||||||||||    
T  15438502 cggaccttgcatatattatgcattgtccttaccaagtgagctaagctca 15438454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 571 - 619
Target Start/End: Complemental strand, 15529806 - 15529758
Alignment:
Q  571 cggatcttgcatatattatgcattgtctttactaagagagctaagctca 619  Q
    |||| |||||||||||||||||||||| |||| ||| ||||||||||||    
T  15529806 cggaccttgcatatattatgcattgtccttaccaagtgagctaagctca 15529758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 576 - 615
Target Start/End: Original strand, 11603854 - 11603893
Alignment:
Q  576 cttgcatatattatgcattgtctttactaagagagctaag 615  Q
    |||||||||||||||||||||| ||||||| |||||||||    
T  11603854 cttgcatatattatgcattgtccttactaacagagctaag 11603893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 548 - 597
Target Start/End: Complemental strand, 18147528 - 18147479
Alignment:
Q  548 tgtggtggccaatgtttgaatctcggatcttgcatatattatgcattgtc 597  Q
    |||||||||| ||||||||||| | |||||| ||||| ||||||||||||    
T  18147528 tgtggtggccgatgtttgaatcccagatctttcatattttatgcattgtc 18147479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 571 - 620
Target Start/End: Complemental strand, 19778114 - 19778065
Alignment:
Q  571 cggatcttgcatatattatgcattgtctttactaagagagctaagctcac 620  Q
    |||| |||||||||||||||||||||| |||| ||  |||||||||||||    
T  19778114 cggaccttgcatatattatgcattgtccttaccaactgagctaagctcac 19778065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 548 - 597
Target Start/End: Original strand, 21589190 - 21589239
Alignment:
Q  548 tgtggtggccaatgtttgaatctcggatcttgcatatattatgcattgtc 597  Q
    ||||||| |||| ||||||||| |||| ||| ||||||||||||||||||    
T  21589190 tgtggtgtccaaggtttgaatcccggaccttccatatattatgcattgtc 21589239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 576 - 621
Target Start/End: Complemental strand, 30623337 - 30623292
Alignment:
Q  576 cttgcatatattatgcattgtctttactaagagagctaagctcaca 621  Q
    |||||||||||||||||||||| |||| ||  ||||||||||||||    
T  30623337 cttgcatatattatgcattgtccttaccaactgagctaagctcaca 30623292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 548 - 597
Target Start/End: Complemental strand, 33743647 - 33743598
Alignment:
Q  548 tgtggtggccaatgtttgaatctcggatcttgcatatattatgcattgtc 597  Q
    |||||||||| | ||||||| |||||| ||||||||| ||||||||||||    
T  33743647 tgtggtggccgaagtttgaacctcggaccttgcatattttatgcattgtc 33743598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 576 - 625
Target Start/End: Original strand, 37015853 - 37015902
Alignment:
Q  576 cttgcatatattatgcattgtctttactaagagagctaagctcacaagga 625  Q
    ||||||||||||||||||||||| ||| ||  ||||||||||||| ||||    
T  37015853 cttgcatatattatgcattgtctctaccaactgagctaagctcacgagga 37015902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 561 - 602
Target Start/End: Original strand, 42208471 - 42208512
Alignment:
Q  561 gtttgaatctcggatcttgcatatattatgcattgtctttac 602  Q
    ||||||| |||||| |||||||||||||||||||||| ||||    
T  42208471 gtttgaacctcggaccttgcatatattatgcattgtccttac 42208512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000005; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 552 - 597
Target Start/End: Complemental strand, 2692283 - 2692238
Alignment:
Q  552 gtggccaatgtttgaatctcggatcttgcatatattatgcattgtc 597  Q
    |||||||  |||||||||||||||||||||||||||||||||||||    
T  2692283 gtggccagggtttgaatctcggatcttgcatatattatgcattgtc 2692238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 561 - 605
Target Start/End: Original strand, 3808120 - 3808164
Alignment:
Q  561 gtttgaatctcggatcttgcatatattatgcattgtctttactaa 605  Q
    |||||||||||||| |||||||||||||||||||||| |||||||    
T  3808120 gtttgaatctcggaccttgcatatattatgcattgtccttactaa 3808164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 561 - 597
Target Start/End: Original strand, 6864135 - 6864171
Alignment:
Q  561 gtttgaatctcggatcttgcatatattatgcattgtc 597  Q
    |||||||| ||||||||||||||||||||||||||||    
T  6864135 gtttgaatatcggatcttgcatatattatgcattgtc 6864171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 573 - 625
Target Start/End: Original strand, 7083006 - 7083058
Alignment:
Q  573 gatcttgcatatattatgcattgtctttactaagagagctaagctcacaagga 625  Q
    ||||||||||||||||||||||||| |||| ||  ||||||||||||| ||||    
T  7083006 gatcttgcatatattatgcattgtccttaccaattgagctaagctcacgagga 7083058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 561 - 601
Target Start/End: Complemental strand, 8809365 - 8809325
Alignment:
Q  561 gtttgaatctcggatcttgcatatattatgcattgtcttta 601  Q
    ||||||| |||||||||||||||||||||||||||| ||||    
T  8809365 gtttgaacctcggatcttgcatatattatgcattgttttta 8809325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 571 - 625
Target Start/End: Original strand, 655761 - 655815
Alignment:
Q  571 cggatcttgcatatattatgcattgtctttactaagagagctaagctcacaagga 625  Q
    |||| ||||||||||||||||||||||  ||| ||  ||||||||||||||||||    
T  655761 cggaccttgcatatattatgcattgtcgataccaactgagctaagctcacaagga 655815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 549 - 598
Target Start/End: Original strand, 1918448 - 1918497
Alignment:
Q  549 gtggtggccaatgtttgaatctcggatcttgcatatattatgcattgtct 598  Q
    ||||||||  ||||| ||| |||||| |||||||||||||||||||||||    
T  1918448 gtggtggctgatgttcgaacctcggaccttgcatatattatgcattgtct 1918497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 571 - 620
Target Start/End: Complemental strand, 4450311 - 4450262
Alignment:
Q  571 cggatcttgcatatattatgcattgtctttactaagagagctaagctcac 620  Q
    |||| ||||||||||||||||||||||||||  ||  |||||||||||||    
T  4450311 cggaccttgcatatattatgcattgtctttatcaactgagctaagctcac 4450262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 561 - 598
Target Start/End: Original strand, 8130461 - 8130498
Alignment:
Q  561 gtttgaatctcggatcttgcatatattatgcattgtct 598  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  8130461 gtttgaatctcggaccttgcatattttatgcattgtct 8130498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 576 - 625
Target Start/End: Complemental strand, 8810684 - 8810635
Alignment:
Q  576 cttgcatatattatgcattgtctttactaagagagctaagctcacaagga 625  Q
    ||||||||||||||| ||||||||||| ||  ||||||||||||| ||||    
T  8810684 cttgcatatattatgtattgtctttaccaactgagctaagctcacgagga 8810635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 548 - 625
Target Start/End: Complemental strand, 9923312 - 9923235
Alignment:
Q  548 tgtggtggccaatgtttgaatctcggatcttgcatatattatgcattgtctttactaagagagctaagctcacaagga 625  Q
    ||||||| |||| ||||||||| || | |||| ||||||||||||||||| |||  ||  ||||||| ||||||||||    
T  9923312 tgtggtgtccaaggtttgaatcccgaaccttgtatatattatgcattgtccttatcaattgagctaaactcacaagga 9923235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 561 - 602
Target Start/End: Complemental strand, 31971588 - 31971547
Alignment:
Q  561 gtttgaatctcggatcttgcatatattatgcattgtctttac 602  Q
    ||||||| |||||| |||||||||||||||||||||| ||||    
T  31971588 gtttgaacctcggaccttgcatatattatgcattgtccttac 31971547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000005; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 548 - 625
Target Start/End: Complemental strand, 7230352 - 7230275
Alignment:
Q  548 tgtggtggccaatgtttgaatctcggatcttgcatatattatgcattgtctttactaagagagctaagctcacaagga 625  Q
    |||||||||| | ||||||| | |||| |||||||||||||||||||||| |||| ||  ||||||||||||| ||||    
T  7230352 tgtggtggccgaggtttgaaccccggaccttgcatatattatgcattgtccttaccaactgagctaagctcacgagga 7230275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 571 - 625
Target Start/End: Complemental strand, 19854614 - 19854560
Alignment:
Q  571 cggatcttgcatatattatgcattgtctttactaagagagctaagctcacaagga 625  Q
    |||||||||||||||||||||||||||  ||| ||  ||||||||||||||||||    
T  19854614 cggatcttgcatatattatgcattgtccataccaactgagctaagctcacaagga 19854560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 561 - 619
Target Start/End: Complemental strand, 37921805 - 37921747
Alignment:
Q  561 gtttgaatctcggatcttgcatatattatgcattgtctttactaagagagctaagctca 619  Q
    ||||||||| |||| |||||||||||||||||||||| |||||||  ||||||| ||||    
T  37921805 gtttgaatcccggaccttgcatatattatgcattgtccttactaactgagctaaactca 37921747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 571 - 620
Target Start/End: Original strand, 7922262 - 7922311
Alignment:
Q  571 cggatcttgcatatattatgcattgtctttactaagagagctaagctcac 620  Q
    |||||||||||||||||||||||||||||||| ||  ||| |||||||||    
T  7922262 cggatcttgcatatattatgcattgtctttaccaactgagataagctcac 7922311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 548 - 625
Target Start/End: Original strand, 50362128 - 50362205
Alignment:
Q  548 tgtggtggccaatgtttgaatctcggatcttgcatatattatgcattgtctttactaagagagctaagctcacaagga 625  Q
    |||||||||||| ||||||| |  ||| ||||||||||||||||||||||  ||| ||  ||||||||||||| ||||    
T  50362128 tgtggtggccaaggtttgaaccctggaccttgcatatattatgcattgtccctaccaactgagctaagctcacgagga 50362205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 548 - 620
Target Start/End: Complemental strand, 54500641 - 54500569
Alignment:
Q  548 tgtggtggccaatgtttgaatctcggatcttgcatatattatgcattgtctttactaagagagctaagctcac 620  Q
    |||||||| || |||||||| | |||| ||| ||||||||||||||||||| ||| ||  |||||||||||||    
T  54500641 tgtggtggtcagtgtttgaaccccggaccttacatatattatgcattgtctctaccaactgagctaagctcac 54500569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 566 - 625
Target Start/End: Complemental strand, 36203290 - 36203231
Alignment:
Q  566 aatctcggatcttgcatatattatgcattgtctttactaagagagctaagctcacaagga 625  Q
    ||||||||| |||||||||||||||||||||| |||  ||  ||||||||||||| ||||    
T  36203290 aatctcggaccttgcatatattatgcattgtccttatcaactgagctaagctcacgagga 36203231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 559 - 590
Target Start/End: Complemental strand, 42594603 - 42594572
Alignment:
Q  559 atgtttgaatctcggatcttgcatatattatg 590  Q
    ||||||||||||||||||||||||||||||||    
T  42594603 atgtttgaatctcggatcttgcatatattatg 42594572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 548 - 615
Target Start/End: Original strand, 56551581 - 56551648
Alignment:
Q  548 tgtggtggccaatgtttgaatctcggatcttgcatatattatgcattgtctttactaagagagctaag 615  Q
    ||||||||||   ||||||| |||||| |||||||||||||||||||||| |||| ||  ||||||||    
T  56551581 tgtggtggccggggtttgaacctcggaccttgcatatattatgcattgtccttaccaactgagctaag 56551648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 571 - 625
Target Start/End: Original strand, 10303523 - 10303577
Alignment:
Q  571 cggatcttgcatatattatgcattgtctttactaagagagctaagctcacaagga 625  Q
    |||||||||||||| |||||||||||| |||| ||  ||||||||||||| ||||    
T  10303523 cggatcttgcatattttatgcattgtccttaccaactgagctaagctcacgagga 10303577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 561 - 619
Target Start/End: Original strand, 11286783 - 11286841
Alignment:
Q  561 gtttgaatctcggatcttgcatatattatgcattgtctttactaagagagctaagctca 619  Q
    ||||||||||| || ||||||||||||||||||||||| ||| ||  || |||||||||    
T  11286783 gtttgaatctcagaccttgcatatattatgcattgtctctaccaactgaactaagctca 11286841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 576 - 626
Target Start/End: Complemental strand, 31780789 - 31780739
Alignment:
Q  576 cttgcatatattatgcattgtctttactaagagagctaagctcacaaggat 626  Q
    ||||||||| |||||||||||| |||| ||  |||||||||||||||||||    
T  31780789 cttgcatattttatgcattgtccttaccaactgagctaagctcacaaggat 31780739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 561 - 631
Target Start/End: Complemental strand, 37193308 - 37193238
Alignment:
Q  561 gtttgaatctcggatcttgcatatattatgcattgtctttactaagagagctaagctcacaaggatccaca 631  Q
    ||||||| | |||| |||||||||||||| |||||||  ||||||  ||||||||||||| ||||| ||||    
T  37193308 gtttgaaccccggaccttgcatatattatacattgtccatactaactgagctaagctcacgaggattcaca 37193238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 576 - 625
Target Start/End: Complemental strand, 6087791 - 6087742
Alignment:
Q  576 cttgcatatattatgcattgtctttactaagagagctaagctcacaagga 625  Q
    ||||||||||||||||||| ||| ||| ||  ||||||||||||||||||    
T  6087791 cttgcatatattatgcattatctataccaactgagctaagctcacaagga 6087742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 576 - 605
Target Start/End: Complemental strand, 6520115 - 6520086
Alignment:
Q  576 cttgcatatattatgcattgtctttactaa 605  Q
    ||||||||||||||||||||||||||||||    
T  6520115 cttgcatatattatgcattgtctttactaa 6520086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 548 - 625
Target Start/End: Complemental strand, 12322745 - 12322668
Alignment:
Q  548 tgtggtggccaatgtttgaatctcggatcttgcatatattatgcattgtctttactaagagagctaagctcacaagga 625  Q
    |||||||||  | ||||||| | |||| ||||||||||||||||||||||  ||| ||  ||||||||||||| ||||    
T  12322745 tgtggtggctgaggtttgaaccccggaacttgcatatattatgcattgtccgtaccaactgagctaagctcacgagga 12322668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 548 - 601
Target Start/End: Original strand, 16733508 - 16733561
Alignment:
Q  548 tgtggtggccaatgtttgaatctcggatcttgcatatattatgcattgtcttta 601  Q
    |||||||||| | | ||||| ||||||||||||||||||||| |||| ||||||    
T  16733508 tgtggtggccgagggttgaacctcggatcttgcatatattatacattatcttta 16733561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 576 - 625
Target Start/End: Complemental strand, 34247484 - 34247435
Alignment:
Q  576 cttgcatatattatgcattgtctttactaagagagctaagctcacaagga 625  Q
    |||||||||||||||||||||| |||| ||  ||||||| ||||||||||    
T  34247484 cttgcatatattatgcattgtccttaccaactgagctaaactcacaagga 34247435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000005; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 548 - 625
Target Start/End: Complemental strand, 1794668 - 1794591
Alignment:
Q  548 tgtggtggccaatgtttgaatctcggatcttgcatatattatgcattgtctttactaagagagctaagctcacaagga 625  Q
    |||||||| | | ||||||| | |||||||||||||||||||||||||||  ||||||  ||||||||||||| ||||    
T  1794668 tgtggtggtcgaggtttgaaccccggatcttgcatatattatgcattgtccatactaactgagctaagctcacgagga 1794591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 562 - 625
Target Start/End: Complemental strand, 34632227 - 34632164
Alignment:
Q  562 tttgaatctcggatcttgcatatattatgcattgtctttactaagagagctaagctcacaagga 625  Q
    |||||| ||||||||||||||||||||| |||||||| ||| ||  ||||||||||||| ||||    
T  34632227 tttgaacctcggatcttgcatatattatacattgtctataccaactgagctaagctcacgagga 34632164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 548 - 602
Target Start/End: Complemental strand, 46707944 - 46707890
Alignment:
Q  548 tgtggtggccaatgtttgaatctcggatcttgcatatattatgcattgtctttac 602  Q
    |||||||||| ||||||||| | |||| |||||||||||||||||||||| ||||    
T  46707944 tgtggtggccgatgtttgaaccccggaacttgcatatattatgcattgtccttac 46707890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 548 - 619
Target Start/End: Original strand, 15854077 - 15854148
Alignment:
Q  548 tgtggtggccaatgtttgaatctcggatcttgcatatattatgcattgtctttactaagagagctaagctca 619  Q
    |||||||||| | |||||||||  |||||||||||||||||||||| |||  ||| ||  ||||||||||||    
T  15854077 tgtggtggccgaggtttgaatcctggatcttgcatatattatgcatcgtccataccaactgagctaagctca 15854148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 570 - 625
Target Start/End: Complemental strand, 28032334 - 28032279
Alignment:
Q  570 tcggatcttgcatatattatgcattgtctttactaagagagctaagctcacaagga 625  Q
    ||||| ||||||||||||||||||||| ||||||||  ||||||| ||||| ||||    
T  28032334 tcggaccttgcatatattatgcattgtttttactaaccgagctaaactcacgagga 28032279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 571 - 625
Target Start/End: Original strand, 52441523 - 52441577
Alignment:
Q  571 cggatcttgcatatattatgcattgtctttactaagagagctaagctcacaagga 625  Q
    |||| ||||||||||||||||||||||| ||| ||  ||||||||||||| ||||    
T  52441523 cggaccttgcatatattatgcattgtctataccaactgagctaagctcacgagga 52441577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 571 - 620
Target Start/End: Original strand, 9639829 - 9639878
Alignment:
Q  571 cggatcttgcatatattatgcattgtctttactaagagagctaagctcac 620  Q
    |||| |||||||||||||||||||||| |||| ||| ||| |||||||||    
T  9639829 cggaccttgcatatattatgcattgtccttaccaagtgagttaagctcac 9639878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 549 - 622
Target Start/End: Original strand, 34521180 - 34521253
Alignment:
Q  549 gtggtggccaatgtttgaatctcggatcttgcatatattatgcattgtctttactaagagagctaagctcacaa 622  Q
    ||||||||| | ||||||| | |||| ||||||||||||||||||||||  ||| ||  ||||||| |||||||    
T  34521180 gtggtggccgaggtttgaaccccggaccttgcatatattatgcattgtccataccaactgagctaaactcacaa 34521253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 571 - 620
Target Start/End: Original strand, 38448878 - 38448927
Alignment:
Q  571 cggatcttgcatatattatgcattgtctttactaagagagctaagctcac 620  Q
    |||| |||||||||||||||||||||| |||| ||  |||||||||||||    
T  38448878 cggaccttgcatatattatgcattgtccttaccaactgagctaagctcac 38448927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 561 - 594
Target Start/End: Complemental strand, 49868070 - 49868037
Alignment:
Q  561 gtttgaatctcggatcttgcatatattatgcatt 594  Q
    |||||||||||||| |||||||||||||||||||    
T  49868070 gtttgaatctcggaccttgcatatattatgcatt 49868037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 548 - 613
Target Start/End: Complemental strand, 23219032 - 23218967
Alignment:
Q  548 tgtggtggccaatgtttgaatctcggatcttgcatatattatgcattgtctttactaagagagcta 613  Q
    |||||||||| | ||||||| |||||| ||||||||| |||| |||||||||||| ||| ||||||    
T  23219032 tgtggtggccgaagtttgaacctcggaccttgcatattttatacattgtctttaccaagtgagcta 23218967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 548 - 601
Target Start/End: Original strand, 31305875 - 31305928
Alignment:
Q  548 tgtggtggccaatgtttgaatctcggatcttgcatatattatgcattgtcttta 601  Q
    ||||| ||||||||||||||  ||||| ||| ||||||||||||||||||||||    
T  31305875 tgtggcggccaatgtttgaacttcggaccttacatatattatgcattgtcttta 31305928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 573 - 625
Target Start/End: Complemental strand, 1642381 - 1642329
Alignment:
Q  573 gatcttgcatatattatgcattgtctttactaagagagctaagctcacaagga 625  Q
    |||||||||||||||||||||||| ||||| ||  |||||| |||||||||||    
T  1642381 gatcttgcatatattatgcattgtttttaccaactgagctatgctcacaagga 1642329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 561 - 605
Target Start/End: Complemental strand, 18557913 - 18557869
Alignment:
Q  561 gtttgaatctcggatcttgcatatattatgcattgtctttactaa 605  Q
    |||||||||||||| |||||| ||||||||||||||| |||||||    
T  18557913 gtttgaatctcggaccttgcacatattatgcattgtccttactaa 18557869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 562 - 622
Target Start/End: Complemental strand, 20927697 - 20927637
Alignment:
Q  562 tttgaatctcggatcttgcatatattatgcattgtctttactaagagagctaagctcacaa 622  Q
    |||||| |||||||||||||||||||||| ||||||  ||| ||  |||||||||||||||    
T  20927697 tttgaacctcggatcttgcatatattatgtattgtccataccaactgagctaagctcacaa 20927637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 548 - 620
Target Start/End: Original strand, 37614416 - 37614488
Alignment:
Q  548 tgtggtggccaatgtttgaatctcggatcttgcatatattatgcattgtctttactaagagagctaagctcac 620  Q
    |||||||||| | ||||||| |||| | |||||||||||||||| |||||| ||| ||  |||||||||||||    
T  37614416 tgtggtggccgaagtttgaacctcgaaccttgcatatattatgcgttgtctctaccaactgagctaagctcac 37614488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 570 - 621
Target Start/End: Original strand, 9123856 - 9123907
Alignment:
Q  570 tcggatcttgcatatattatgcattgtctttactaagagagctaagctcaca 621  Q
    ||||||||| ||||||||||||||||||||||| ||  ||| ||||||||||    
T  9123856 tcggatcttacatatattatgcattgtctttaccaactgagttaagctcaca 9123907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 576 - 619
Target Start/End: Complemental strand, 13409472 - 13409429
Alignment:
Q  576 cttgcatatattatgcattgtctttactaagagagctaagctca 619  Q
    ||||||||||||||||||||||||||||||  ||||||| ||||    
T  13409472 cttgcatatattatgcattgtctttactaactgagctaaactca 13409429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 561 - 627
Target Start/End: Original strand, 16701583 - 16701649
Alignment:
Q  561 gtttgaatctcggatcttgcatatattatgcattgtctttactaagagagctaagctcacaaggatc 627  Q
    ||||||||| |||| |||||||||||||| |||||||  ||| ||  ||||||||||||| ||||||    
T  16701583 gtttgaatcccggaccttgcatatattattcattgtccctaccaactgagctaagctcacgaggatc 16701649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 571 - 625
Target Start/End: Complemental strand, 18331756 - 18331702
Alignment:
Q  571 cggatcttgcatatattatgcattgtctttactaagagagctaagctcacaagga 625  Q
    |||| ||||||||| ||||||||||||  ||| ||| ||||||||||||||||||    
T  18331756 cggaccttgcatattttatgcattgtccataccaagtgagctaagctcacaagga 18331702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 548 - 597
Target Start/End: Complemental strand, 3389234 - 3389185
Alignment:
Q  548 tgtggtggccaatgtttgaatctcggatcttgcatatattatgcattgtc 597  Q
    |||| ||||| ||||||||| | | |||||||||||||||||||||||||    
T  3389234 tgtgatggccgatgtttgaaccccagatcttgcatatattatgcattgtc 3389185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 548 - 625
Target Start/End: Complemental strand, 5485258 - 5485181
Alignment:
Q  548 tgtggtggccaatgtttgaatctcggatcttgcatatattatgcattgtctttactaagagagctaagctcacaagga 625  Q
    |||||||||||| ||| ||| | ||||  |||||||||||||||||||||  ||| ||  ||||||||||||| ||||    
T  5485258 tgtggtggccaaggttagaaccccggacattgcatatattatgcattgtccctaccaactgagctaagctcacgagga 5485181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 576 - 625
Target Start/End: Original strand, 18489093 - 18489142
Alignment:
Q  576 cttgcatatattatgcattgtctttactaagagagctaagctcacaagga 625  Q
    ||||||||||||||||||||||| ||| ||  ||||||| ||||||||||    
T  18489093 cttgcatatattatgcattgtctataccaactgagctaaactcacaagga 18489142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 576 - 625
Target Start/End: Complemental strand, 30893977 - 30893928
Alignment:
Q  576 cttgcatatattatgcattgtctttactaagagagctaagctcacaagga 625  Q
    ||||||||||||||||||||||||||| ||  ||| ||||||||| ||||    
T  30893977 cttgcatatattatgcattgtctttacaaactgagttaagctcacgagga 30893928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 576 - 625
Target Start/End: Original strand, 36321511 - 36321560
Alignment:
Q  576 cttgcatatattatgcattgtctttactaagagagctaagctcacaagga 625  Q
    |||||||||||||||||||||| |||| ||  ||||||||||||| ||||    
T  36321511 cttgcatatattatgcattgtccttaccaactgagctaagctcacgagga 36321560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 548 - 625
Target Start/End: Complemental strand, 37932402 - 37932325
Alignment:
Q  548 tgtggtggccaatgtttgaatctcggatcttgcatatattatgcattgtctttactaagagagctaagctcacaagga 625  Q
    |||||||||||  ||| ||| | |||| ||||||||||||||||||||||  ||| ||  ||||||||||||| ||||    
T  37932402 tgtggtggccagggttcgaaccccggaccttgcatatattatgcattgtccataccaactgagctaagctcacgagga 37932325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 548 - 597
Target Start/End: Complemental strand, 36359386 - 36359337
Alignment:
Q  548 tgtggtggccaatgtttgaatctcggatcttgcatatattatgcattgtc 597  Q
    |||||||||||| ||||||| | |||| ||||||||||||||||||||||    
T  36359386 tgtggtggccaaggtttgaaccccggaccttgcatatattatgcattgtc 36359337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 569 - 625
Target Start/End: Complemental strand, 7206176 - 7206120
Alignment:
Q  569 ctcggatcttgcatatattatgcattgtctttactaagagagctaagctcacaagga 625  Q
    |||||| ||||||||||||||||||||||| ||| ||  ||||||||||||| ||||    
T  7206176 ctcggaccttgcatatattatgcattgtctctaccaactgagctaagctcacgagga 7206120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 548 - 596
Target Start/End: Complemental strand, 32204616 - 32204568
Alignment:
Q  548 tgtggtggccaatgtttgaatctcggatcttgcatatattatgcattgt 596  Q
    |||||||||| | ||| |||||| |||||||||||||||||||||||||    
T  32204616 tgtggtggccgaggttcgaatcttggatcttgcatatattatgcattgt 32204568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 574 - 621
Target Start/End: Complemental strand, 14944208 - 14944161
Alignment:
Q  574 atcttgcatatattatgcattgtctttactaagagagctaagctcaca 621  Q
    ||||| |||||||||||||||||| |||||||| ||| ||||||||||    
T  14944208 atcttacatatattatgcattgtccttactaagtgagttaagctcaca 14944161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 576 - 623
Target Start/End: Original strand, 20120738 - 20120785
Alignment:
Q  576 cttgcatatattatgcattgtctttactaagagagctaagctcacaag 623  Q
    |||||||||||||||||||||| |||| ||  ||||||||||||||||    
T  20120738 cttgcatatattatgcattgtccttaccaactgagctaagctcacaag 20120785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 571 - 621
Target Start/End: Complemental strand, 4056839 - 4056789
Alignment:
Q  571 cggatcttgcatatattatgcattgtctttactaagagagctaagctcaca 621  Q
    |||| |||||||||||||||||||||| |||| ||  ||||||||||||||    
T  4056839 cggaccttgcatatattatgcattgtccttaccaaccgagctaagctcaca 4056789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 548 - 622
Target Start/End: Complemental strand, 13000757 - 13000683
Alignment:
Q  548 tgtggtggccaatgtttgaatctcggatcttgcatatattatgcattgtctttactaagagagctaagctcacaa 622  Q
    |||||| ||| | |||| || |||||| ||| ||||||||||||||| ||||||| ||  |||||||||||||||    
T  13000757 tgtggtagccgaggtttaaacctcggaccttacatatattatgcattatctttaccaactgagctaagctcacaa 13000683  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 561 - 602
Target Start/End: Complemental strand, 4138050 - 4138009
Alignment:
Q  561 gtttgaatctcggatcttgcatatattatgcattgtctttac 602  Q
    |||||||||||||| |||||||||||||| ||||||| ||||    
T  4138050 gtttgaatctcggaccttgcatatattatacattgtccttac 4138009  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 580 - 625
Target Start/End: Complemental strand, 4238799 - 4238754
Alignment:
Q  580 catatattatgcattgtctttactaagagagctaagctcacaagga 625  Q
    ||||||||||||||||||  ||||||  ||||||||||||||||||    
T  4238799 catatattatgcattgtccatactaactgagctaagctcacaagga 4238754  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 571 - 620
Target Start/End: Complemental strand, 24593425 - 24593376
Alignment:
Q  571 cggatcttgcatatattatgcattgtctttactaagagagctaagctcac 620  Q
    |||| |||||||||||||||||||||| |||| ||  |||||||||||||    
T  24593425 cggaccttgcatatattatgcattgtccttaccaactgagctaagctcac 24593376  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 571 - 620
Target Start/End: Complemental strand, 28771631 - 28771582
Alignment:
Q  571 cggatcttgcatatattatgcattgtctttactaagagagctaagctcac 620  Q
    ||||||||||||||||||||||||||| |||| ||  ||||||| |||||    
T  28771631 cggatcttgcatatattatgcattgtccttaccaactgagctaaactcac 28771582  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 548 - 597
Target Start/End: Complemental strand, 30045525 - 30045476
Alignment:
Q  548 tgtggtggccaatgtttgaatctcggatcttgcatatattatgcattgtc 597  Q
    |||||||||| | |||||||||||| | |||| |||||||||||||||||    
T  30045525 tgtggtggccgaggtttgaatctcgaaccttgtatatattatgcattgtc 30045476  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 548 - 597
Target Start/End: Complemental strand, 30050688 - 30050639
Alignment:
Q  548 tgtggtggccaatgtttgaatctcggatcttgcatatattatgcattgtc 597  Q
    |||||||||| | |||||||||||| | |||| |||||||||||||||||    
T  30050688 tgtggtggccgaggtttgaatctcgaaccttgtatatattatgcattgtc 30050639  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 548 - 597
Target Start/End: Complemental strand, 30141732 - 30141683
Alignment:
Q  548 tgtggtggccaatgtttgaatctcggatcttgcatatattatgcattgtc 597  Q
    |||||||||| | |||||||||||| | |||| |||||||||||||||||    
T  30141732 tgtggtggccgaggtttgaatctcgaaccttgtatatattatgcattgtc 30141683  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 574 - 627
Target Start/End: Original strand, 30762510 - 30762563
Alignment:
Q  574 atcttgcatatattatgcattgtctttactaagagagctaagctcacaaggatc 627  Q
    ||||||||||| ||||||||||||| ||| ||  ||||||| ||||||||||||    
T  30762510 atcttgcatattttatgcattgtctataccaactgagctaaactcacaaggatc 30762563  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 571 - 620
Target Start/End: Original strand, 39068720 - 39068769
Alignment:
Q  571 cggatcttgcatatattatgcattgtctttactaagagagctaagctcac 620  Q
    ||||||||||||||||||||||||||| |||  ||  |||||||||||||    
T  39068720 cggatcttgcatatattatgcattgtccttatcaactgagctaagctcac 39068769  T

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Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 548 - 597
Target Start/End: Original strand, 43004671 - 43004720
Alignment:
Q  548 tgtggtggccaatgtttgaatctcggatcttgcatatattatgcattgtc 597  Q
    |||||||||||   ||||||| ||||| ||||||||||||||||||||||    
T  43004671 tgtggtggccaggatttgaatttcggaccttgcatatattatgcattgtc 43004720  T

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Target: scaffold0712 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0712
Description:

Target: scaffold0712; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 557 - 601
Target Start/End: Original strand, 7234 - 7278
Alignment:
Q  557 caatgtttgaatctcggatcttgcatatattatgcattgtcttta 601  Q
    |||||||||||| ||||||| ||||||||||||||||| ||||||    
T  7234 caatgtttgaatatcggatcatgcatatattatgcattatcttta 7278  T

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Target: scaffold0709 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0709
Description:

Target: scaffold0709; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 557 - 601
Target Start/End: Original strand, 7252 - 7296
Alignment:
Q  557 caatgtttgaatctcggatcttgcatatattatgcattgtcttta 601  Q
    |||||||||||| ||||||| ||||||||||||||||| ||||||    
T  7252 caatgtttgaatatcggatcatgcatatattatgcattatcttta 7296  T

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Target: scaffold1619 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold1619
Description:

Target: scaffold1619; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 561 - 598
Target Start/End: Complemental strand, 1090 - 1053
Alignment:
Q  561 gtttgaatctcggatcttgcatatattatgcattgtct 598  Q
    ||||||||| |||| |||||||||||||||||||||||    
T  1090 gtttgaatcccggaccttgcatatattatgcattgtct 1053  T

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Target: scaffold0896 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 576 - 625
Target Start/End: Complemental strand, 3185 - 3136
Alignment:
Q  576 cttgcatatattatgcattgtctttactaagagagctaagctcacaagga 625  Q
    ||||||||||||||| ||||||||||| ||  ||||||||||||| ||||    
T  3185 cttgcatatattatgtattgtctttaccaactgagctaagctcacgagga 3136  T

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