View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5051-Insertion-6 (Length: 223)
Name: NF5051-Insertion-6
Description: NF5051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5051-Insertion-6 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 8 - 223
Target Start/End: Complemental strand, 44926700 - 44926485
Alignment:
| Q |
8 |
gcaattgcctttgcgagcattgtctttcctgtaccaggaggtccaaaaagtaatacacctttacatggcttcagaaccccatcccctttgaatatatctg |
107 |
Q |
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| T |
44926700 |
gcaattgcctttgcgagcattgtctttcctgtaccaggaggtccaaaaagtaatacacctttacatggcttcagaaccccatcccctttgaatatatctg |
44926601 |
T |
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| Q |
108 |
gtcttctaaggggaagcataactgcttcttgaagtgattctttaacgtcatccaatgcaccaatatctgaaaaagtcacccctatctcgtttggagagat |
207 |
Q |
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| T |
44926600 |
gtcttctaaggggaagcataactgcttcttgaagtgattctttaacgtcatccaatgcaccaatatctgaaaaagtcacccctatctcgtttgcagagat |
44926501 |
T |
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| Q |
208 |
aagctctcgtcttatg |
223 |
Q |
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|||||||||||||||| |
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| T |
44926500 |
aagctctcgtcttatg |
44926485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 8 - 223
Target Start/End: Complemental strand, 44935140 - 44934925
Alignment:
| Q |
8 |
gcaattgcctttgcgagcattgtctttcctgtaccaggaggtccaaaaagtaatacacctttacatggcttcagaaccccatcccctttgaatatatctg |
107 |
Q |
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||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
44935140 |
gcaattgccttggcaagcattgtctttcctgtaccaggaggtccaaaaagcaatacacctttacatggcttcagaaccccatcacctttgaatagatctg |
44935041 |
T |
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| Q |
108 |
gtcttctaaggggaagcataactgcttcttgaagtgattctttaacgtcatccaatgcaccaatatctgaaaaagtcacccctatctcgtttggagagat |
207 |
Q |
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| T |
44935040 |
gtcttctaaggggaagcataaccgcttcttgaagtgattctttaacatcatccaaagcaccaatatctgaaaaagtcacctttatctcgtttgcagggat |
44934941 |
T |
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| Q |
208 |
aagctctcgtcttatg |
223 |
Q |
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| T |
44934940 |
aagctcttgtcttatg |
44934925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 7 - 223
Target Start/End: Complemental strand, 45988527 - 45988311
Alignment:
| Q |
7 |
agcaattgcctttgcgagcattgtctttcctgtaccaggaggtccaaaaagtaatacacctttacatggcttcagaaccccatcccctttgaatatatct |
106 |
Q |
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| T |
45988527 |
agcaattgcctttgcgagcattgtctttcctgtaccaggaggtccaaaaagcaatacacctttacatggcttcagaagcccatcgcctttgaatagatat |
45988428 |
T |
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| Q |
107 |
ggtcttctaaggggaagcataactgcttcttgaagtgattctttaacgtcatccaatgcaccaatatctgaaaaagtcacccctatctcgtttggagaga |
206 |
Q |
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| T |
45988427 |
ggtcttctaaggggaagcataaccgcttcttgaagtgattctttaatatcatccaaagcaccaatatctgaaaaagtcacttctatctcatttgcaggga |
45988328 |
T |
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| Q |
207 |
taagctctcgtcttatg |
223 |
Q |
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| T |
45988327 |
taagctcttgtcttatg |
45988311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 8 - 209
Target Start/End: Original strand, 11094673 - 11094871
Alignment:
| Q |
8 |
gcaattgcctttgcgagcattgtctttcctgtaccaggaggtccaaaaagtaatacacctttacatggcttcagaaccccatcccctttgaatatatctg |
107 |
Q |
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||||| |||||||| |||||||| ||||| |||||||| || || |||||||||| |||| |||||||||| |||| ||| |||||||| | |||| |
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| T |
11094673 |
gcaatcgcctttgctagcattgtttttccggtaccaggtggaccgaaaagtaatatacctctacatggctttagaagtcca---cctttgaaaaggtctg |
11094769 |
T |
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| Q |
108 |
gtcttctaaggggaagcataactgcttcttgaagtgattctttaacgtcatccaatgcaccaatatctgaaaaagtcacccctatctcgtttggagagat |
207 |
Q |
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| T |
11094770 |
gtcttctaaggggaagcattactagctcttgaagcgattcttttatctcatctaatgcaccgatatctgcgaatgtaacacctatctcatttgcagggat |
11094869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 112 - 187
Target Start/End: Complemental strand, 32199839 - 32199764
Alignment:
| Q |
112 |
tctaaggggaagcataactgcttcttgaagtgattctttaacgtcatccaatgcaccaatatctgaaaaagtcacc |
187 |
Q |
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| T |
32199839 |
tctaaggggaagtataaccgcttcttgaagtgattctttgacatcatttaatgcactaatatatgaaaaagtcacc |
32199764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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