View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5051_high_3 (Length: 394)
Name: NF5051_high_3
Description: NF5051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5051_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 124; Significance: 1e-63; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 106 - 261
Target Start/End: Original strand, 19371016 - 19371171
Alignment:
| Q |
106 |
cctgctaccacggggcataaatagtgtactgcttttgcttcacttaaatgataaatctcaatctatcattctagtgtttgcttccgtaatgcctaccaga |
205 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
19371016 |
cctgctaccttggggcataaatagtgtacagcttttgcttcacttaaatgataaatctcaatctatcattctagtgtttgcttccataatgcctagcaga |
19371115 |
T |
|
| Q |
206 |
gaatgctttgttcttttattgagttcatttttcaaaattaaatcttttgaataaac |
261 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
19371116 |
gaatgctttgttcatttattgaattcatttttcaaaattaaatctttcgaataaac |
19371171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 271 - 388
Target Start/End: Complemental strand, 42198655 - 42198532
Alignment:
| Q |
271 |
tgtttttgtgaattctgttagaatgatctctcggt--tagttacatgaggttgaatagtctatttata----taagctaactgcctctagctggatgaca |
364 |
Q |
| |
|
|||||||||||||||||||||| |||| ||| || || |||||| |||||||| |||||||||||| ||| ||||||||||||||||| ||||| |
|
|
| T |
42198655 |
tgtttttgtgaattctgttagattgatttcttagtcttaattacattaggttgaaaagtctatttatagacataaactaactgcctctagctgactgaca |
42198556 |
T |
|
| Q |
365 |
cgtgttagtcagcaactcctagat |
388 |
Q |
| |
|
| || |||||||||||||||||| |
|
|
| T |
42198555 |
agcgtcagtcagcaactcctagat |
42198532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 276 - 335
Target Start/End: Original strand, 19371661 - 19371720
Alignment:
| Q |
276 |
ttgtgaattctgttagaatgatctctcggttagttacatgaggttgaatagtctatttat |
335 |
Q |
| |
|
|||||| ||||||||| ||||| ||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
19371661 |
ttgtgagttctgttagcatgatttcttagttagttacatgaggttgaagagtctatttat |
19371720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 335
Target Start/End: Complemental strand, 11521733 - 11521660
Alignment:
| Q |
261 |
ctgttataactgtttttgtgaattctgttagaatgatctctcggttagttacatgaggttgaatagtctatttat |
335 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||| |||| | |||||||||||||||| ||| ||||||| |
|
|
| T |
11521733 |
ctgttgtaactgttttc-tgaattctgttagaatgatttctcaatcagttacatgaggttgatgagtgtatttat |
11521660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 297
Target Start/End: Complemental strand, 21200177 - 21200145
Alignment:
| Q |
265 |
tataactgtttttgtgaattctgttagaatgat |
297 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |
|
|
| T |
21200177 |
tataactgtttttgtgaattctgttagattgat |
21200145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University