View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5051_low_1 (Length: 404)

Name: NF5051_low_1
Description: NF5051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5051_low_1
NF5051_low_1
[»] chr6 (11 HSPs)
chr6 (19-396)||(4913512-4913893)
chr6 (198-239)||(20241803-20241844)
chr6 (198-239)||(22135787-22135828)
chr6 (198-239)||(22143140-22143181)
chr6 (197-239)||(28051647-28051689)
chr6 (200-239)||(20192606-20192645)
chr6 (200-239)||(20242009-20242048)
chr6 (200-239)||(22135993-22136032)
chr6 (200-239)||(22143346-22143385)
chr6 (199-239)||(14482499-14482539)
chr6 (135-167)||(17465289-17465321)
[»] chr8 (6 HSPs)
chr8 (40-328)||(2949695-2949989)
chr8 (19-326)||(2923697-2924010)
chr8 (47-320)||(2933068-2933347)
chr8 (28-328)||(3009407-3009713)
chr8 (19-126)||(37798754-37798861)
chr8 (135-239)||(31171698-31171801)
[»] chr2 (7 HSPs)
chr2 (19-122)||(28027458-28027561)
chr2 (135-239)||(31991815-31991919)
chr2 (197-239)||(15891328-15891370)
chr2 (200-239)||(15891526-15891565)
chr2 (197-239)||(16253898-16253940)
chr2 (292-326)||(28027248-28027282)
chr2 (135-167)||(18036113-18036145)
[»] chr3 (3 HSPs)
chr3 (19-328)||(1503710-1504022)
chr3 (203-239)||(25887492-25887528)
chr3 (135-167)||(27187840-27187872)
[»] chr5 (8 HSPs)
chr5 (136-239)||(17195244-17195347)
chr5 (197-239)||(2599532-2599574)
chr5 (199-239)||(13130969-13131009)
chr5 (135-239)||(18920952-18921055)
chr5 (199-239)||(25360468-25360508)
chr5 (203-239)||(33370916-33370952)
chr5 (135-167)||(13131035-13131067)
chr5 (135-167)||(36311902-36311934)
[»] chr4 (7 HSPs)
chr4 (135-239)||(13866482-13866586)
chr4 (199-239)||(13851032-13851072)
chr4 (197-239)||(31324454-31324496)
chr4 (198-239)||(13866752-13866793)
chr4 (197-239)||(13854980-13855022)
chr4 (197-239)||(17292236-17292278)
chr4 (197-237)||(31324663-31324703)
[»] chr7 (4 HSPs)
chr7 (135-239)||(3380556-3380660)
chr7 (197-235)||(11824932-11824970)
chr7 (190-227)||(1642306-1642343)
chr7 (135-167)||(15337565-15337597)
[»] chr1 (2 HSPs)
chr1 (199-239)||(31451819-31451859)
chr1 (199-239)||(16081725-16081765)


Alignment Details
Target: chr6 (Bit Score: 304; Significance: 1e-171; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 19 - 396
Target Start/End: Original strand, 4913512 - 4913893
Alignment:
Q  19 cagataaccttcaatgagaatccttgtccacaatgcagtcttgggtatatagttcctgaatgggttgaggagaagccaaccc---ttcttgacataaagc 115  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||    
T  4913512 cagataagcttcaatgagaatccttgtccacaatgcagtcttgggtatatagttcctgaatgggttgaggagaagccaacccgccttcttgacataaagc 4913611  T
Q  116 agatatatggtaaagattcccttccaactacaacacttgtcttacctctgaaggcggacaagataaattctgtgaaacagaagctctcaagcattcaccc 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4913612 agatatatggtaaagattcccttccaactacaacacttgtcttacctctgaaggcggacaagataaattctgtgaaacagcagctctcaagcattcaccc 4913711  T
Q  216 agaagttttattgttcctttcaaagatcagagacttttctgtcagagaagataatgaggaccccaaaatggaatctgtaactactgtatctatttcaagc 315  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4913712 agaaattttatcgttcctttcaaagatcagagacttttctgtcagagaagataatgaggaccccaaaatggaatctgtaactactgtatctatttcaagc 4913811  T
Q  316 gagattaactttgcggc-nnnnnnnncttgaatgctgagtcttacactattcatttatctgcgagggaaaatggtgatgatg 396  Q
    |||||||||| ||||||         |||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||    
T  4913812 gagattaactctgcggcaaaaaaaaacttgaatgctgagtcttacactatccatttatctgcgggggaaaatggtaatgatg 4913893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 198 - 239
Target Start/End: Original strand, 20241803 - 20241844
Alignment:
Q  198 gctctcaagcattcacccagaagttttattgttcctttcaaa 239  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  20241803 gctctcaagcattcacccagaagttttattgttcctttcaaa 20241844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 198 - 239
Target Start/End: Original strand, 22135787 - 22135828
Alignment:
Q  198 gctctcaagcattcacccagaagttttattgttcctttcaaa 239  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  22135787 gctctcaagcattcacccagaagttttattgttcctttcaaa 22135828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 198 - 239
Target Start/End: Original strand, 22143140 - 22143181
Alignment:
Q  198 gctctcaagcattcacccagaagttttattgttcctttcaaa 239  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  22143140 gctctcaagcattcacccagaagttttattgttcctttcaaa 22143181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 239
Target Start/End: Original strand, 28051647 - 28051689
Alignment:
Q  197 agctctcaagcattcacccagaagttttattgttcctttcaaa 239  Q
    ||||||||| |||||||||| ||||||||||||||||||||||    
T  28051647 agctctcaaacattcacccaaaagttttattgttcctttcaaa 28051689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 200 - 239
Target Start/End: Original strand, 20192606 - 20192645
Alignment:
Q  200 tctcaagcattcacccagaagttttattgttcctttcaaa 239  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  20192606 tctcaagcattcacctggaagttttattgttcctttcaaa 20192645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 200 - 239
Target Start/End: Complemental strand, 20242048 - 20242009
Alignment:
Q  200 tctcaagcattcacccagaagttttattgttcctttcaaa 239  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  20242048 tctcaagcattcacctggaagttttattgttcctttcaaa 20242009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 200 - 239
Target Start/End: Complemental strand, 22136032 - 22135993
Alignment:
Q  200 tctcaagcattcacccagaagttttattgttcctttcaaa 239  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  22136032 tctcaagcattcacctggaagttttattgttcctttcaaa 22135993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 200 - 239
Target Start/End: Complemental strand, 22143385 - 22143346
Alignment:
Q  200 tctcaagcattcacccagaagttttattgttcctttcaaa 239  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  22143385 tctcaagcattcacctggaagttttattgttcctttcaaa 22143346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 14482499 - 14482539
Alignment:
Q  199 ctctcaagcattcacccagaagttttattgttcctttcaaa 239  Q
    |||||||||||||||||  ||||||||||||||| ||||||    
T  14482499 ctctcaagcattcacccgaaagttttattgttccattcaaa 14482539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 17465321 - 17465289
Alignment:
Q  135 ccttccaactacaacacttgtcttacctctgaa 167  Q
    |||||||||||||||| ||||||||||||||||    
T  17465321 ccttccaactacaacaattgtcttacctctgaa 17465289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 124; Significance: 1e-63; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 40 - 328
Target Start/End: Complemental strand, 2949989 - 2949695
Alignment:
Q  40 ccttgtccacaatgcagtcttgggtatatagttcctgaatgggttgaggagaagccaacccttcttgacataaagcagatatatggt------aaagatt 133  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || | |||||||||      |||||||    
T  2949989 ccttgtccacattgcagtcttgggtatatagttcctgaatgggttgaggagaagccaacccttgttgacatacagaaaatatatggtgctggtaaagatt 2949890  T
Q  134 cccttccaactacaacacttgtcttacctctgaaggcggacaagataaattctgtgaaacagaagctctcaagcattcacccagaagttttattgttcct 233  Q
    ||||||||| ||||| | |||||||||| |||||| |||||| | |||  | |||||| ||| | ||||||||||| ||||| ||||||||| | |||||    
T  2949889 cccttccaaatacaataattgtcttaccactgaagccggacagggtaaggtttgtgaaccagcaactctcaagcatccacccggaagttttactcttcct 2949790  T
Q  234 ttcaaagatcagagacttttctgtcagagaagataatgaggaccccaaaatggaatctgtaactactgtatctatttcaagcgagattaactttg 328  Q
    |||||| ||||||  | |||||||||||||| ||| |||||| ||||||  | |  || ||||| |||||||||||||||||||||| |||||||    
T  2949789 ttcaaaaatcagacgcctttctgtcagagaaaatagtgaggatcccaaagagaacactttaactgctgtatctatttcaagcgagatcaactttg 2949695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 19 - 326
Target Start/End: Complemental strand, 2924010 - 2923697
Alignment:
Q  19 cagataaccttcaatgagaatccttgtccacaatgcagtcttgggtatatagttcctgaatgggttgaggagaagccaacccttcttgacataaagcaga 118  Q
    |||||||  ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  2924010 cagataaggttcaatgagaagccttgtccacattgcagtcttgggtatatagttcctgaatgggttgaggagaagccaacccttgttgacataaagaaga 2923911  T
Q  119 tata------tggtaaagattcccttccaactacaacacttgtcttacctctgaaggcggacaagataaattctgtgaaacagaagctctcaagcattca 212  Q
    ||||      |||||||| |||||||| |||||||||| ||||||||||||||||| |||| ||| |  |  |||| |||||||||||||||||| ||||    
T  2923910 tatatggcgctggtaaaggttcccttcgaactacaacaattgtcttacctctgaagtcggataaggtcgaacctgttaaacagaagctctcaagctttca 2923811  T
Q  213 cccagaagttttattgttcctttcaaagatcagagacttttctgtcagagaagataatgaggaccccaaaatggaatctgtaactactgtatctatttca 312  Q
     ||||||||  |  |||||||| | || |||||| || |||||||||| |||| || |||| | ||||||  | |  ||||||||  ||| |||||||||    
T  2923810 tccagaagtccttctgttccttacgaaaatcagacacctttctgtcagggaagttagtgagaatcccaaacagaacactgtaactgatgtgtctatttca 2923711  T
Q  313 agcgagattaactt 326  Q
    || |||||||||||    
T  2923710 agtgagattaactt 2923697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 47 - 320
Target Start/End: Complemental strand, 2933347 - 2933068
Alignment:
Q  47 cacaatgcagtcttgggtatatagttcctgaatgggttgaggagaagccaacccttcttgacataaagcagatata------tggtaaagattcccttcc 140  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||      ||||||||||||||||||    
T  2933347 cacattgcagtcttgggtatatagttcctgaatgggttgaggagaagccaagccttcttgacataaagcagatatacggtgctggtaaagattcccttcc 2933248  T
Q  141 aactacaacacttgtcttacctctgaaggcggacaagataaattctgtgaaacagaagctctcaagcattcacccagaagttttattgttcctttcaaag 240  Q
    ||| |||| | ||||||| ||||| |||   |||||| |  |  ||||||||||| ||||||| ||| || |||| ||||||||| ||||||||| |||     
T  2933247 aacgacaataattgtcttgcctcttaagctagacaaggtcgaacctgtgaaacagcagctctcgagcgttaacccggaagttttactgttccttttaaaa 2933148  T
Q  241 atcagagacttttctgtcagagaagataatgaggaccccaaaatggaatctgtaactactgtatctatttcaagcgagat 320  Q
    |||||| |  |||||||||||||||| || ||||| ||||||| | |  |||||||| ||||||||||||||||||||||    
T  2933147 atcagacatctttctgtcagagaagacaacgaggatcccaaaaagaacactgtaacttctgtatctatttcaagcgagat 2933068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 28 - 328
Target Start/End: Original strand, 3009407 - 3009713
Alignment:
Q  28 ttcaatgagaatccttgtccacaatgcagtcttgggtatatagttcctgaatgggttgaggagaagccaacccttcttgacataaagcagatata----- 122  Q
    ||||||||||  ||||||||||| |||||  |||||||| ||||||||||||||||||||||||||||||||||| |||||||| || |||||||         
T  3009407 ttcaatgagaggccttgtccacattgcagaattgggtatgtagttcctgaatgggttgaggagaagccaacccttgttgacatacagaagatatatggag 3009506  T
Q  123 -tggtaaagattcccttccaactacaacacttgtcttacctctgaaggcggacaagataaattctgtgaaacagaagctctcaagcattcacccagaagt 221  Q
     |||||||||||||||||||||||||||  |||| || ||| ||||  | |||||| | ||  |||| |||||  | || || || |||||||| |||||    
T  3009507 ctggtaaagattcccttccaactacaacgattgtgttgcctttgaaatcagacaaggtcaaacctgttaaacaacaactatctagtattcacccggaagt 3009606  T
Q  222 tttattgttcctttcaaagatcagagacttttctgtcagagaagataatgaggaccccaaaatggaatctgtaactactgtatctatttcaagcgagatt 321  Q
    | | ||||| ||||| || || ||| || ||||||| ||||||| |||| |||||  |||   | |  ||| |||| |||||||||||||||||||||||    
T  3009607 tctgttgtttctttcgaaaattagacacctttctgtaagagaaggtaataaggacttcaaccagaacactgcaacttctgtatctatttcaagcgagatt 3009706  T
Q  322 aactttg 328  Q
    |||||||    
T  3009707 aactttg 3009713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 19 - 126
Target Start/End: Complemental strand, 37798861 - 37798754
Alignment:
Q  19 cagataaccttcaatgagaatccttgtccacaatgcagtcttgggtatatagttcctgaatgggttgaggagaagccaacccttcttgacataaagcaga 118  Q
    |||||||  ||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| || | || ||||||||||    
T  37798861 cagataaggttcaatgagaagccttgtccacattgcagtcttgggtatacagttcctgaatgggttgaggagaagccaaccattgtcgagataaagcaga 37798762  T
Q  119 tatatggt 126  Q
    ||||||||    
T  37798761 tatatggt 37798754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 239
Target Start/End: Complemental strand, 31171801 - 31171698
Alignment:
Q  135 ccttccaactacaacacttgtcttacctctgaaggcggacaagataaattctgtgaaacagaagctctcaagcattcacccagaagttttattgttcctt 234  Q
    |||||||||||||||| ||||||||||||||||    || ||   ||| | ||| |||||  || |||||||||||||||| |||||| |||||||||||    
T  31171801 ccttccaactacaacaattgtcttacctctgaaatgagataattcaaact-tgttaaacaacagttctcaagcattcacccggaagttctattgttcctt 31171703  T
Q  235 tcaaa 239  Q
    |||||    
T  31171702 tcaaa 31171698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 5e-35; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 28027561 - 28027458
Alignment:
Q  19 cagataaccttcaatgagaatccttgtccacaatgcagtcttgggtatatagttcctgaatgggttgaggagaagccaacccttcttgacataaagcaga 118  Q
    |||||||  ||||||||||  ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  28027561 cagataaggttcaatgagatgccttgtccacattgcagtcttggatatatagttcctgaatgggttgaggagaagccaacccttgttgacataaagcaga 28027462  T
Q  119 tata 122  Q
    ||||    
T  28027461 tata 28027458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 135 - 239
Target Start/End: Complemental strand, 31991919 - 31991815
Alignment:
Q  135 ccttccaactacaacacttgtcttacctctgaaggcggacaagataaattctgtgaaacagaagctctcaagcattcacccagaagttttattgttcctt 234  Q
    |||||||||||||||| ||||||||||||||||   ||| ||| | ||  || |  ||||  |||||||||||||||||||  |||||||||||||||||    
T  31991919 ccttccaactacaacaattgtcttacctctgaaattggataaggtcaaacctattgaacaacagctctcaagcattcacccgaaagttttattgttcctt 31991820  T
Q  235 tcaaa 239  Q
    |||||    
T  31991819 tcaaa 31991815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 239
Target Start/End: Original strand, 15891328 - 15891370
Alignment:
Q  197 agctctcaagcattcacccagaagttttattgttcctttcaaa 239  Q
    ||||||||||||||||||| ||||||||||||||||| |||||    
T  15891328 agctctcaagcattcacccggaagttttattgttcctatcaaa 15891370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 200 - 239
Target Start/End: Complemental strand, 15891565 - 15891526
Alignment:
Q  200 tctcaagcattcacccagaagttttattgttcctttcaaa 239  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  15891565 tctcaagcattcacctggaagttttattgttcctttcaaa 15891526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 16253940 - 16253898
Alignment:
Q  197 agctctcaagcattcacccagaagttttattgttcctttcaaa 239  Q
    ||||||||||||||||| | |||||||||||||||| ||||||    
T  16253940 agctctcaagcattcactcggaagttttattgttccattcaaa 16253898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 326
Target Start/End: Complemental strand, 28027282 - 28027248
Alignment:
Q  292 gtaactactgtatctatttcaagcgagattaactt 326  Q
    |||||| ||||||||||||||||||||||||||||    
T  28027282 gtaactgctgtatctatttcaagcgagattaactt 28027248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 18036145 - 18036113
Alignment:
Q  135 ccttccaactacaacacttgtcttacctctgaa 167  Q
    |||||||||||||||| ||||||||||||||||    
T  18036145 ccttccaactacaacaattgtcttacctctgaa 18036113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 19 - 328
Target Start/End: Original strand, 1503710 - 1504022
Alignment:
Q  19 cagataaccttcaatgagaatccttgtccacaatgcagtcttgggtatatagttcctgaatgggttgaggagaagccaacccttcttgacataaagcaga 118  Q
    |||||||  ||||||||||| || |||||||| |||||| |||| |||||||||||||| ||||||||||||||||||||||||  |||||||||| | |    
T  1503710 cagataaggttcaatgagaagccatgtccacattgcagtattggctatatagttcctgagtgggttgaggagaagccaacccttgctgacataaagaata 1503809  T
Q  119 tatatgg---taaagattcccttccaactacaacacttgtcttacctctgaaggcggacaagataaattctgtgaaacagaagctctcaagcattcaccc 215  Q
    |||||||   |    |||||||||||||||||| | |  | ||||| || ||| |||| ||| |  |  |||| || ||  | || ||||||||||| ||    
T  1503810 tatatggtgcttgtaattcccttccaactacaatagtcattttaccacttaagccggagaaggtccaacctgttaagcatcaactgtcaagcattcatcc 1503909  T
Q  216 agaagttttattgttcctttcaaagatcagagacttttctgtcagagaagataatgaggaccccaaaatggaatctgtaactactgtatctatttcaagc 315  Q
    ||||||  | ||||| ||| | || |||||| || ||||||||||||||| ||||||||||||||||  | |  | |||||| | |||||||||||||||    
T  1503910 agaagtgcttttgtttcttactaaaatcagacacctttctgtcagagaagttaatgaggaccccaaacagaataccgtaactgccgtatctatttcaagc 1504009  T
Q  316 gagattaactttg 328  Q
    |||||||| ||||    
T  1504010 gagattaattttg 1504022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 239
Target Start/End: Complemental strand, 25887528 - 25887492
Alignment:
Q  203 caagcattcacccagaagttttattgttcctttcaaa 239  Q
    ||||||||||||| |||||||||||||||||||||||    
T  25887528 caagcattcacccggaagttttattgttcctttcaaa 25887492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 27187872 - 27187840
Alignment:
Q  135 ccttccaactacaacacttgtcttacctctgaa 167  Q
    |||||||||||||||| ||||||||||||||||    
T  27187872 ccttccaactacaacaattgtcttacctctgaa 27187840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 136 - 239
Target Start/End: Complemental strand, 17195347 - 17195244
Alignment:
Q  136 cttccaactacaacacttgtcttacctctgaaggcggacaagataaattctgtgaaacagaagctctcaagcattcacccagaagttttattgttccttt 235  Q
    ||||||||||||||| ||||||||||| ||||   ||| ||| | ||  || | |||||  | |||||||||||||||||||||||||||||||||||||    
T  17195347 cttccaactacaacaattgtcttacctttgaaattggataaggtcaaacctattaaacaacaactctcaagcattcacccagaagttttattgttccttt 17195248  T
Q  236 caaa 239  Q
    ||||    
T  17195247 caaa 17195244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 239
Target Start/End: Original strand, 2599532 - 2599574
Alignment:
Q  197 agctctcaagcattcacccagaagttttattgttcctttcaaa 239  Q
    ||||||||||| |||||||| ||||||||||||||||||||||    
T  2599532 agctctcaagcgttcacccaaaagttttattgttcctttcaaa 2599574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 13131009 - 13130969
Alignment:
Q  199 ctctcaagcattcacccagaagttttattgttcctttcaaa 239  Q
    ||||||||||||||||  |||||||||||||||||||||||    
T  13131009 ctctcaagcattcaccttgaagttttattgttcctttcaaa 13130969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 239
Target Start/End: Original strand, 18920952 - 18921055
Alignment:
Q  135 ccttccaactacaacacttgtcttacctctgaaggcggacaagataaattctgtgaaacagaagctctcaagcattcacccagaagttttattgttcctt 234  Q
    |||||||||||||||| ||||||||| | ||||   ||| ||| | ||  |||| |||||  |||||||||||||||||||  |||||||||||| ||||    
T  18920952 ccttccaactacaacaattgtcttacttgtgaaattggataaggtcaac-ctgttaaacaacagctctcaagcattcacccgaaagttttattgtgcctt 18921050  T
Q  235 tcaaa 239  Q
    |||||    
T  18921051 tcaaa 18921055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 25360508 - 25360468
Alignment:
Q  199 ctctcaagcattcacccagaagttttattgttcctttcaaa 239  Q
    |||||| ||||||||||||||||| ||||||||||||||||    
T  25360508 ctctcatgcattcacccagaagttctattgttcctttcaaa 25360468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 239
Target Start/End: Original strand, 33370916 - 33370952
Alignment:
Q  203 caagcattcacccagaagttttattgttcctttcaaa 239  Q
    ||||||||||||||||||||||||||||| |||||||    
T  33370916 caagcattcacccagaagttttattgttcatttcaaa 33370952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 13131067 - 13131035
Alignment:
Q  135 ccttccaactacaacacttgtcttacctctgaa 167  Q
    |||||||||||||||| ||||||||||||||||    
T  13131067 ccttccaactacaacaattgtcttacctctgaa 13131035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 36311934 - 36311902
Alignment:
Q  135 ccttccaactacaacacttgtcttacctctgaa 167  Q
    |||||||||||||||| ||||||||||||||||    
T  36311934 ccttccaactacaacaattgtcttacctctgaa 36311902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 135 - 239
Target Start/End: Original strand, 13866482 - 13866586
Alignment:
Q  135 ccttccaactacaacacttgtcttacctctgaaggcggacaagataaattctgtgaaacagaagctctcaagcattcacccagaagttttattgttcctt 234  Q
    |||| ||||||||||| ||||| ||||||||||   ||| ||| | ||   ||| |||||  ||||||||||||||||||| ||||||||||||||||||    
T  13866482 cctttcaactacaacaattgtcatacctctgaaattggataaggtcaaacttgttaaacaacagctctcaagcattcacccggaagttttattgttcctt 13866581  T
Q  235 tcaaa 239  Q
    |||||    
T  13866582 tcaaa 13866586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 13851032 - 13851072
Alignment:
Q  199 ctctcaagcattcacccagaagttttattgttcctttcaaa 239  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  13851032 ctctcaagcattcacccggaagttttattgttcctttcaaa 13851072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 239
Target Start/End: Original strand, 31324454 - 31324496
Alignment:
Q  197 agctctcaagcattcacccagaagttttattgttcctttcaaa 239  Q
    ||||||||||||||||||| |||||| ||||||||||||||||    
T  31324454 agctctcaagcattcacccggaagttctattgttcctttcaaa 31324496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 198 - 239
Target Start/End: Complemental strand, 13866793 - 13866752
Alignment:
Q  198 gctctcaagcattcacccagaagttttattgttcctttcaaa 239  Q
    ||||||||| |||||||| |||||||||||||||||||||||    
T  13866793 gctctcaagtattcacccggaagttttattgttcctttcaaa 13866752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 13855022 - 13854980
Alignment:
Q  197 agctctcaagcattcacccagaagttttattgttcctttcaaa 239  Q
    |||| ||||| |||||||| |||||||||||||||||||||||    
T  13855022 agctttcaagtattcacccggaagttttattgttcctttcaaa 13854980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 239
Target Start/End: Original strand, 17292236 - 17292278
Alignment:
Q  197 agctctcaagcattcacccagaagttttattgttcctttcaaa 239  Q
    ||||||||||||||||||| |||||| |||||||| |||||||    
T  17292236 agctctcaagcattcacccggaagttctattgttcttttcaaa 17292278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 31324703 - 31324663
Alignment:
Q  197 agctctcaagcattcacccagaagttttattgttcctttca 237  Q
    |||||||||||||||||||  |||||| |||||||||||||    
T  31324703 agctctcaagcattcacccgaaagtttaattgttcctttca 31324663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 135 - 239
Target Start/End: Complemental strand, 3380660 - 3380556
Alignment:
Q  135 ccttccaactacaacacttgtcttacctctgaaggcggacaagataaattctgtgaaacagaagctctcaagcattcacccagaagttttattgttcctt 234  Q
    ||||||||| |||||| ||||||||||||||||   ||| ||| | ||  || | |||||  | |||||||||||| |||| ||||||||||||||||||    
T  3380660 ccttccaacgacaacaattgtcttacctctgaaattggataaggtcaaacctattaaacaacaactctcaagcatttacccggaagttttattgttcctt 3380561  T
Q  235 tcaaa 239  Q
    |||||    
T  3380560 tcaaa 3380556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 235
Target Start/End: Original strand, 11824932 - 11824970
Alignment:
Q  197 agctctcaagcattcacccagaagttttattgttccttt 235  Q
    |||||||||||||||||||  ||||||||||||||||||    
T  11824932 agctctcaagcattcacccgaaagttttattgttccttt 11824970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 227
Target Start/End: Original strand, 1642306 - 1642343
Alignment:
Q  190 aaacagaagctctcaagcattcacccagaagttttatt 227  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  1642306 aaacagcagctctcaagcattcacccggaagttttatt 1642343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 167
Target Start/End: Original strand, 15337565 - 15337597
Alignment:
Q  135 ccttccaactacaacacttgtcttacctctgaa 167  Q
    |||||||||||||||| ||||||||||||||||    
T  15337565 ccttccaactacaacaattgtcttacctctgaa 15337597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 31451819 - 31451859
Alignment:
Q  199 ctctcaagcattcacccagaagttttattgttcctttcaaa 239  Q
    ||||||||||||||||| |||||| ||||||||||||||||    
T  31451819 ctctcaagcattcaccccgaagttctattgttcctttcaaa 31451859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 16081765 - 16081725
Alignment:
Q  199 ctctcaagcattcacccagaagttttattgttcctttcaaa 239  Q
    ||||||||||||||||| ||||| |||||||||| ||||||    
T  16081765 ctctcaagcattcacccggaagtgttattgttccattcaaa 16081725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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