View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5051_low_2 (Length: 400)
Name: NF5051_low_2
Description: NF5051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5051_low_2 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 26422444 - 26422048
Alignment:
| Q |
1 |
ccgcaaaacctgaagtaaagctcctcactcagaaaaaatttgtgcccatcatcaaaattccagcaactgactcctcccacttgacaccactattctcata |
100 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
26422444 |
ccgcaaaacctgaagtaaagctcctcactcagaagaaatttgtgcccatcatcaaaattcccgcaactgactcctcccacttgacaccactattctcata |
26422345 |
T |
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| Q |
101 |
tcgcccttttcaattttattcctccccaatattcacttttgtactccagattttagttccacttgcagtttcctttgagttcttttttatccctaaaata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26422344 |
tcgcccttttcaattttattcctccccaatattcacttttgtactccagattttagttccacttgcagtttcctttgagttcttttttatccctaaaata |
26422245 |
T |
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| Q |
201 |
ttaatctttccctgaatgtgcatcaccacatgcctgaacttcagctattttctccggctggagtcttaaagtttggaagcatcttctcatatagtctctt |
300 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26422244 |
ttaatctgtccctgaatgtgcatcaccacatgcctgaacttcagctattttctccggctggagtcttaaagtttggaagcatcttctcatatagtctctt |
26422145 |
T |
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| Q |
301 |
ctatgaattgtctttcttaatgaataactaacttaggtgttttctccccctgttccacgatatttccagtaatcaattcttttaatgtcattccacacct |
400 |
Q |
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||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
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| T |
26422144 |
ctatgaattgtctttctcaatgaataactaactta---gttttctccccctgttccacaatatttccagtaatcaattcttttaatgttattccacacct |
26422048 |
T |
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