View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5051_low_4 (Length: 360)

Name: NF5051_low_4
Description: NF5051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5051_low_4
NF5051_low_4
[»] chr4 (3 HSPs)
chr4 (8-343)||(55330623-55330958)
chr4 (164-344)||(55336217-55336397)
chr4 (45-109)||(55336092-55336156)
[»] chr2 (15 HSPs)
chr2 (59-275)||(8375923-8376139)
chr2 (59-275)||(8411867-8412083)
chr2 (59-275)||(8433965-8434181)
chr2 (59-343)||(8395538-8395825)
chr2 (173-338)||(8431120-8431285)
chr2 (59-343)||(8405747-8406034)
chr2 (186-275)||(8439091-8439180)
chr2 (63-275)||(8416952-8417164)
chr2 (189-275)||(8417215-8417301)
chr2 (13-105)||(8403745-8403837)
chr2 (168-301)||(8403900-8404033)
chr2 (44-105)||(8368103-8368164)
chr2 (44-105)||(8401246-8401307)
chr2 (44-105)||(8422823-8422884)
chr2 (59-105)||(8431018-8431064)


Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 8 - 343
Target Start/End: Original strand, 55330623 - 55330958
Alignment:
Q  8 caatgtttcatcaacagtctcttccaacagcttaaggaatccaccacaatttctatacatttcaaataccataccaatttgtccaccatgttcaaaagca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55330623 caatgtttcatcaacagtctcttccaacagcttaaggaatccaccacaatttctatacatttcaaataccataccaatttgtccaccatgttcaaaagca 55330722  T
Q  108 ttcactacagcacctaatgaaccagccattaaagcaactatagctgcaacagaattgtttcctacaaatgcagaacctatagctgcaattccagtgagta 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55330723 ttcactacagcacctaatgaaccagccattaaagcaactatagctgcaacagaattgtttcctacaaatgcagaacctatagctgcaattccagtgagta 55330822  T
Q  208 atggaccagcaattgctaaactcttgttaacctttaatgctatatttccaagtctttcataatcttcaatatctttctttttcacaacttcaataacttc 307  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  55330823 atggaccagcagttgctaaactcttattaacctttaatgctatatttccaagtctttcataatcttcaatatctttcattttcacaacttcaataacttc 55330922  T
Q  308 tctcaattccttttctaattcctcactccatccatt 343  Q
    ||||||||||||||||||||||||||||||||||||    
T  55330923 tctcaattccttttctaattcctcactccatccatt 55330958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 164 - 344
Target Start/End: Original strand, 55336217 - 55336397
Alignment:
Q  164 gtttcctacaaatgcagaacctatagctgcaattccagtgagtaatggaccagcaattgctaaactcttgttaacctttaatgctatatttccaagtctt 263  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||| | ||||||||||| ||| ||||||||||||||||||||     
T  55336217 gtttcctacaaatgcagaacctattgctgcaattccagtgagtaatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctc 55336316  T
Q  264 tcataatcttcaatatctttctttttcacaacttcaataacttctctcaattccttttctaattcctcactccatccattt 344  Q
    ||||| |||||||| |||||  | || ||||||||||||||||| |||| |||| |||||||||| |||||||||||||||    
T  55336317 tcatagtcttcaatgtctttactctttacaacttcaataacttccctcatttccatttctaattcttcactccatccattt 55336397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 109
Target Start/End: Original strand, 55336092 - 55336156
Alignment:
Q  45 aatccaccacaatttctatacatttcaaataccataccaatttgtccaccatgttcaaaagcatt 109  Q
    ||||||||||| ||||||||||||||||| |||||||||| |||||||||||| |||||| ||||    
T  55336092 aatccaccacagtttctatacatttcaaacaccataccaacttgtccaccatgctcaaaaccatt 55336156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 7e-31; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 59 - 275
Target Start/End: Complemental strand, 8376139 - 8375923
Alignment:
Q  59 tctatacatttcaaataccataccaatttgtccaccatgttcaaaagcattcactacagcacctaatgaaccagccattaaagcaactatagctgcaaca 158  Q
    ||||||||||||||| ||||| |||| |||||||||||| ||||||| ||| | ||||| | | |||||||||||||  | || ||| | ||| || | |    
T  8376139 tctatacatttcaaaaaccatgccaacttgtccaccatgctcaaaagtattaattacagaagccaatgaaccagccaaaagaggaacaaaagcagccaaa 8376040  T
Q  159 gaattgtttcctacaaatgcagaacctatagctgcaattccagtgagtaatggaccagcaattgctaaactcttgttaacctttaatgctatatttccaa 258  Q
    |||    | ||||||||||  || || |||||||||||||| ||||| ||||| || |||||||| ||||||||||| ||||| |||||||| |||||||    
T  8376039 gaaccactacctacaaatgtcgatccaatagctgcaattcctgtgagcaatggccctgcaattgccaaactcttgtttaccttcaatgctatgtttccaa 8375940  T
Q  259 gtctttcataatcttca 275  Q
    |||| ||||||||||||    
T  8375939 gtctgtcataatcttca 8375923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 59 - 275
Target Start/End: Original strand, 8411867 - 8412083
Alignment:
Q  59 tctatacatttcaaataccataccaatttgtccaccatgttcaaaagcattcactacagcacctaatgaaccagccattaaagcaactatagctgcaaca 158  Q
    ||||||||||||||| ||||| |||| |||||||||||| ||||||| ||| ||  ||| | | |||||||||| || || || ||| |  || || | |    
T  8411867 tctatacatttcaaaaaccatgccaacttgtccaccatgctcaaaagtattaacagcagaagccaatgaaccagtcaatagaggaacaaatgcagccaaa 8411966  T
Q  159 gaattgtttcctacaaatgcagaacctatagctgcaattccagtgagtaatggaccagcaattgctaaactcttgttaacctttaatgctatatttccaa 258  Q
    ||| | || |||||||||| ||| || || ||||||||||| ||||||||||| || |||||||| ||||||||||| ||||| || ||||| |||||||    
T  8411967 gaactattgcctacaaatgtagatccaattgctgcaattcctgtgagtaatggccctgcaattgccaaactcttgtttaccttcaacgctatgtttccaa 8412066  T
Q  259 gtctttcataatcttca 275  Q
    |||| ||||||||||||    
T  8412067 gtctgtcataatcttca 8412083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 59 - 275
Target Start/End: Original strand, 8433965 - 8434181
Alignment:
Q  59 tctatacatttcaaataccataccaatttgtccaccatgttcaaaagcattcactacagcacctaatgaaccagccattaaagcaactatagctgcaaca 158  Q
    ||||||||||||||| ||||| |||| |||||||||||| ||||||| ||| ||  ||| | | |||||||||| || || || ||| |  || || | |    
T  8433965 tctatacatttcaaaaaccatgccaacttgtccaccatgctcaaaagtattaacagcagaagccaatgaaccagtcaatagaggaacaaatgcagccaaa 8434064  T
Q  159 gaattgtttcctacaaatgcagaacctatagctgcaattccagtgagtaatggaccagcaattgctaaactcttgttaacctttaatgctatatttccaa 258  Q
    ||| | || |||||||||| ||| || || ||||||||||| ||||||||||| || |||||||| ||||||||||| ||||| || ||||| |||||||    
T  8434065 gaactattgcctacaaatgtagatccaattgctgcaattcctgtgagtaatggccctgcaattgccaaactcttgtttaccttcaacgctatgtttccaa 8434164  T
Q  259 gtctttcataatcttca 275  Q
    |||| ||||||||||||    
T  8434165 gtctgtcataatcttca 8434181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 59 - 343
Target Start/End: Complemental strand, 8395825 - 8395538
Alignment:
Q  59 tctatacatttcaaataccataccaatttgtccaccatgttcaaaagcattcactacagcacctaatgaaccagccattaaagcaactatagctgcaaca 158  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||| ||| | | ||| | | |||||||||||||  | || ||| |  || || | |    
T  8395825 tctatacatttcaaaaaccatgccaatttgtccaccatgttcaaaagtatttattgcagaagccaatgaaccagccaagagaggaacaaatgcagccaaa 8395726  T
Q  159 gaattg---tttcctacaaatgcagaacctatagctgcaattccagtgagtaatggaccagcaattgctaaactcttgttaacctttaatgctatatttc 255  Q
    ||| |    || || | ||||| ||| || |||||||||||||| ||||| ||||| || |||||||| ||||||||||| ||||| || ||||| ||||    
T  8395725 gaactaccattgccaataaatgtagatccaatagctgcaattcctgtgagcaatggccctgcaattgccaaactcttgtttaccttcaaagctatgtttc 8395626  T
Q  256 caagtctttcataatcttcaatatctttctttttcacaacttcaataacttctctcaattccttttctaattcctcactccatccatt 343  Q
    ||||||| ||||||||||||   |||||   ||| || || |||| |||||| |||| |||| |||| ||||| ||||||||||||||    
T  8395625 caagtctgtcataatcttcagcgtcttttcgttttaccacgtcaacaacttccctcatttccatttccaattcttcactccatccatt 8395538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 173 - 338
Target Start/End: Original strand, 8431120 - 8431285
Alignment:
Q  173 aaatgcagaacctatagctgcaattccagtgagtaatggaccagcaattgctaaactcttgttaacctttaatgctatatttccaagtctttcataatct 272  Q
    ||||| ||| ||||||||||||||||| | ||||||||| || |||||||| ||||||||||| ||||| |||||||| ||||||||||| |||||||||    
T  8431120 aaatgtagatcctatagctgcaattcctgagagtaatggccctgcaattgccaaactcttgtttaccttcaatgctatgtttccaagtctatcataatct 8431219  T
Q  273 tcaatatctttctttttcacaacttcaataacttctctcaattccttttctaattcctcactccat 338  Q
    ||||  |||||  | || |  ||||||| ||| || |||| |||| |||||||||| |||||||||    
T  8431220 tcaacgtcttttctctttatcacttcaacaacatccctcatttccatttctaattcttcactccat 8431285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 59 - 343
Target Start/End: Original strand, 8405747 - 8406034
Alignment:
Q  59 tctatacatttcaaataccataccaatttgtccaccatgttcaaaagcattcactacagcacctaatgaaccagccattaaagcaactatagctgcaaca 158  Q
    ||||||||||||||| ||||| |||| |||||||||||||||||||| ||| | | ||| | | |||||||||||||  | || ||| |  || || | |    
T  8405747 tctatacatttcaaaaaccatgccaacttgtccaccatgttcaaaagtattgattgcagaagccaatgaaccagccaagagaggaacaaatgcagccaaa 8405846  T
Q  159 gaattg---tttcctacaaatgcagaacctatagctgcaattccagtgagtaatggaccagcaattgctaaactcttgttaacctttaatgctatatttc 255  Q
    ||| |    || || | ||||| ||| || |||||||||||||| ||||| ||||| || |||||||| ||||||||||| ||||| || ||||| ||||    
T  8405847 gaactaccattgccaataaatgtagatccaatagctgcaattcctgtgagcaatggccctgcaattgccaaactcttgtttaccttcaaagctatgtttc 8405946  T
Q  256 caagtctttcataatcttcaatatctttctttttcacaacttcaataacttctctcaattccttttctaattcctcactccatccatt 343  Q
    ||||||| ||||||||||||   |||||   ||| || || |||| |||||| |||| |||| |||| ||||| ||||||||||||||    
T  8405947 caagtctgtcataatcttcagcgtcttttcgttttaccacgtcaacaacttccctcatttccatttccaattcttcactccatccatt 8406034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 186 - 275
Target Start/End: Original strand, 8439091 - 8439180
Alignment:
Q  186 atagctgcaattccagtgagtaatggaccagcaattgctaaactcttgttaacctttaatgctatatttccaagtctttcataatcttca 275  Q
    |||||||||||||| ||||| ||||| || |||||||| ||||||||||| ||||| |||||||| ||||||||||| ||||||||||||    
T  8439091 atagctgcaattcctgtgagcaatggccctgcaattgccaaactcttgtttaccttcaatgctatgtttccaagtctgtcataatcttca 8439180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 63 - 275
Target Start/End: Original strand, 8416952 - 8417164
Alignment:
Q  63 tacatttcaaataccataccaatttgtccaccatgttcaaaagcattcactacagcacctaatgaaccagccattaaagcaactatagctgcaacagaat 162  Q
    ||||||||||| ||||| |||| |||||||||||| ||||||| ||| ||| ||| | | ||||||||||||| || || ||| |  || || | |||      
T  8416952 tacatttcaaaaaccatgccaacttgtccaccatgctcaaaagtattaactgcagaagccaatgaaccagccaatagaggaacaaaggcagccaaagagc 8417051  T
Q  163 tgtttcctacaaatgcagaacctatagctgcaattccagtgagtaatggaccagcaattgctaaactcttgttaacctttaatgctatatttccaagtct 262  Q
      || |||| ||||| ||| || ||||| |||||||| ||||||||||| || |||||||||||||||||||  ||||| || ||||| |||||||| ||    
T  8417052 cattgcctataaatgtagatccaatagcggcaattcctgtgagtaatggccctgcaattgctaaactcttgtctaccttcaaagctatgtttccaagcct 8417151  T
Q  263 ttcataatcttca 275  Q
     | ||||||||||    
T  8417152 gttataatcttca 8417164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 189 - 275
Target Start/End: Original strand, 8417215 - 8417301
Alignment:
Q  189 gctgcaattccagtgagtaatggaccagcaattgctaaactcttgttaacctttaatgctatatttccaagtctttcataatcttca 275  Q
    ||||||||||| ||||||||||| || |||||||| ||||||||||| ||||| || ||||| ||||||||||| ||||||||||||    
T  8417215 gctgcaattcctgtgagtaatggccctgcaattgccaaactcttgtttaccttcaacgctatgtttccaagtctgtcataatcttca 8417301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 105
Target Start/End: Original strand, 8403745 - 8403837
Alignment:
Q  13 tttcatcaacagtctcttccaacagcttaaggaatccaccacaatttctatacatttcaaataccataccaatttgtccaccatgttcaaaag 105  Q
    |||| ||||| ||||||||||| |||| ||  ||||||||||| ||||||||||| ||||| |||||||||| |||||| ||||| |||||||    
T  8403745 tttcttcaactgtctcttccaaaagctcaaaaaatccaccacagtttctatacatctcaaacaccataccaacttgtcctccatgctcaaaag 8403837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 168 - 301
Target Start/End: Original strand, 8403900 - 8404033
Alignment:
Q  168 cctacaaatgcagaacctatagctgcaattccagtgagtaatggaccagcaattgctaaactcttgttaacctttaatgctatatttccaagtctttcat 267  Q
    ||||||||||  || ||||||||||||||||| || |  || || ||   |||||||||||||||||||| ||||||||| ||||| || | ||| ||||    
T  8403900 cctacaaatgatgaccctatagctgcaattcctgttaacaaaggtcctaaaattgctaaactcttgttaatctttaatgcaatattccctaatctctcat 8403999  T
Q  268 aatcttcaatatctttctttttcacaacttcaat 301  Q
    |||| |||||||||||  | ||||| ||||||||    
T  8404000 aatcctcaatatcttttctcttcaccacttcaat 8404033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 8368103 - 8368164
Alignment:
Q  44 gaatccaccacaatttctatacatttcaaataccataccaatttgtccaccatgttcaaaag 105  Q
    |||||||||||||  ||||||||||||| | |||||||||| |||||||||||| |||||||    
T  8368103 gaatccaccacaagctctatacatttcagaaaccataccaacttgtccaccatgctcaaaag 8368164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 8401307 - 8401246
Alignment:
Q  44 gaatccaccacaatttctatacatttcaaataccataccaatttgtccaccatgttcaaaag 105  Q
    |||||||||||||  ||||||||||||| | |||||||||| |||||||||||| |||||||    
T  8401307 gaatccaccacaagctctatacatttcagaaaccataccaacttgtccaccatgctcaaaag 8401246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 8422884 - 8422823
Alignment:
Q  44 gaatccaccacaatttctatacatttcaaataccataccaatttgtccaccatgttcaaaag 105  Q
    |||||||||||||  ||||||||||||| | |||||||||| |||||||||||| |||||||    
T  8422884 gaatccaccacaagctctatacatttcagaaaccataccaacttgtccaccatgctcaaaag 8422823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 8431018 - 8431064
Alignment:
Q  59 tctatacatttcaaataccataccaatttgtccaccatgttcaaaag 105  Q
    ||||||||||||||| ||||| |||| |||||||||||| |||||||    
T  8431018 tctatacatttcaaaaaccatgccaacttgtccaccatgctcaaaag 8431064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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