View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5051_low_5 (Length: 344)
Name: NF5051_low_5
Description: NF5051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5051_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 336
Target Start/End: Complemental strand, 9741196 - 9740878
Alignment:
| Q |
19 |
ctattcgccaaaaagcatgcaatcgcgccaaagatatagctatgcatacttcgaattttaacaaccttcgtgggtctggactcggacatagatgcggtac |
118 |
Q |
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| T |
9741196 |
ctattcgccaaaaagcatgcaatcgcgccaaagatatagctatgcatacttcgaattttaacaacctccgtgggtctggacttggacttagatgcagtac |
9741097 |
T |
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| Q |
119 |
cctgctcccatttccggtttcctccaacgctgattgtacccggtaagtgtattgtttattttgtacaacttttgatgaataaatgaacaataaaaacaca |
218 |
Q |
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| T |
9741096 |
cctgctcccatttccgatttcctccaacgctgattgtacccggtaagtgtattgtttattttctacaatttttgatgaacaaatgaacaataaaaacaca |
9740997 |
T |
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| Q |
219 |
atattataaattttattatgaatgctttgcaatggaatgaaaatat-aaattttctgactactttatgtgtttcttatatttacagcgtgcattagagtt |
317 |
Q |
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| T |
9740996 |
atattataaatttcattatgaatgcttggcaatggaatgaacatataaaattttctgactactttatgtgtttcttatatttacagcgtgcgttagagtt |
9740897 |
T |
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| Q |
318 |
gaagaggaagttgatgatg |
336 |
Q |
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| T |
9740896 |
gaagaggaagttgttgatg |
9740878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 117 - 302
Target Start/End: Complemental strand, 9754017 - 9753831
Alignment:
| Q |
117 |
accctgctcccatttccggtttcctccaacgctgattgtacccggtaagtgtattgtttattttgtacaacttttgatgaataaatgaacaataaaaaca |
216 |
Q |
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||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||| |
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| T |
9754017 |
accctgctcccatttccggtttcctccaacgttcattgtactcggtaagtgtattgtttattttctacaacttttaatgaacaaatgaacaataaaaaca |
9753918 |
T |
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| Q |
217 |
caatattataaattttattatgaatgctttgcaatggaatgaaaatat-aaattttctgactactttatgtgtttcttatatttaca |
302 |
Q |
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| T |
9753917 |
caatattataaatttcagtatgaatgcttggcaatggaatgaaaatataaaattttctgacaactttatgtgtttcttatacttaca |
9753831 |
T |
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