View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5051_low_6 (Length: 322)
Name: NF5051_low_6
Description: NF5051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5051_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 17 - 315
Target Start/End: Original strand, 6823179 - 6823479
Alignment:
| Q |
17 |
ataaattcacttgattagccacatatgtatgcattattatgac--atgtcttattcactagattagccacatatgtatgcatcatgcatatgttcccaag |
114 |
Q |
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| T |
6823179 |
ataaattcacttgattagccacatatgtatgcattattatgacttatgtcttattcactagattagccacatatgtatgcatcgtgcatatgttcccaag |
6823278 |
T |
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| Q |
115 |
gttgatgataactatgaaatatgggaaaaacacaaaatagcaataatttagtacctcttggagaagagtcaagaagcttagatcaggagaaggcatgaaa |
214 |
Q |
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| T |
6823279 |
gttgatgataactatgaaatatgggaaaaacacaaaatagcaataatttagtacctcttggagaagagtcaggaagcttagatcaggagaaggcatgaaa |
6823378 |
T |
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| Q |
215 |
gctgtgacaaatacagcagctgcaattttcttaggaaataattccatggccacagatatacacatcccacctaagctatgacccactaggataactctct |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
6823379 |
gctgtgacaaatacagcagctgcaattttcttaggaaataattccatggccacagatatacacatcccacctaagctatgacccactagaataactctct |
6823478 |
T |
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| Q |
315 |
g |
315 |
Q |
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| T |
6823479 |
g |
6823479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 123 - 315
Target Start/End: Original strand, 6807306 - 6807497
Alignment:
| Q |
123 |
taactatgaaatatgggaaaaacacaaaatagcaataatttagtacctcttggagaagagtcaagaagcttagatcaggagaaggcatgaaagctgtgac |
222 |
Q |
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| T |
6807306 |
taactatgaaatatgagaaagat-caaaataaggataatcaagtacctcttggagtagactcaagtagcttagatcaggagaaggcatgaaagctgtaac |
6807404 |
T |
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| Q |
223 |
aaatacagcagctgcaattttcttaggaaataattccatggccacagatatacacatcccacctaagctatgacccactaggataactctctg |
315 |
Q |
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| T |
6807405 |
aaatacagcagctgcaattttctttggaaataattccatggccacagatatacacatcccacccaagctatgacccactagaataactctctg |
6807497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 164 - 315
Target Start/End: Original strand, 6814131 - 6814282
Alignment:
| Q |
164 |
agtacctcttggagaagagtcaagaagcttagatcaggagaaggcatgaaagctgtgacaaatacagcagctgcaattttcttaggaaataattccatgg |
263 |
Q |
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|||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
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| T |
6814131 |
agtacctcttggagtagactcaagtagcttagatcaggagaaggcatgaaagctgtaacaaatacagcagctgcaattttctttggaaataattccatgg |
6814230 |
T |
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| Q |
264 |
ccacagatatacacatcccacctaagctatgacccactaggataactctctg |
315 |
Q |
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| T |
6814231 |
ccacagatatacacatcccacccaagctatgacccactagaataactctctg |
6814282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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