View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5051_low_9 (Length: 236)

Name: NF5051_low_9
Description: NF5051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5051_low_9
NF5051_low_9
[»] chr8 (8 HSPs)
chr8 (4-154)||(33904888-33905038)
chr8 (156-210)||(11904854-11904908)
chr8 (155-210)||(12142081-12142136)
chr8 (152-210)||(35200553-35200611)
chr8 (154-209)||(41075725-41075780)
chr8 (163-201)||(45502670-45502708)
chr8 (150-207)||(14342319-14342376)
chr8 (157-205)||(28897997-28898045)
[»] chr7 (5 HSPs)
chr7 (152-210)||(28713674-28713732)
chr7 (154-210)||(38349586-38349642)
chr7 (154-209)||(42974506-42974561)
chr7 (157-207)||(46576372-46576422)
chr7 (157-210)||(33496501-33496554)
[»] chr5 (4 HSPs)
chr5 (155-210)||(43100335-43100390)
chr5 (154-210)||(12248272-12248328)
chr5 (157-207)||(13988249-13988299)
chr5 (157-207)||(36890379-36890429)
[»] chr2 (4 HSPs)
chr2 (152-210)||(40216406-40216464)
chr2 (157-209)||(17823581-17823633)
chr2 (157-207)||(13697095-13697145)
chr2 (157-207)||(14945866-14945916)
[»] chr3 (10 HSPs)
chr3 (151-210)||(36674646-36674705)
chr3 (152-206)||(29915090-29915144)
chr3 (152-206)||(29964243-29964297)
chr3 (160-209)||(48034937-48034986)
chr3 (159-207)||(33288136-33288184)
chr3 (157-207)||(12224133-12224183)
chr3 (157-207)||(23004758-23004808)
chr3 (157-207)||(50989205-50989255)
chr3 (157-207)||(51092337-51092387)
chr3 (158-207)||(38247801-38247850)
[»] chr6 (5 HSPs)
chr6 (157-207)||(16717992-16718042)
chr6 (161-210)||(12748217-12748266)
chr6 (157-210)||(34792778-34792831)
chr6 (157-207)||(14314116-14314166)
chr6 (158-207)||(1244686-1244735)
[»] chr4 (10 HSPs)
chr4 (152-210)||(48525323-48525381)
chr4 (158-207)||(3287087-3287136)
chr4 (152-207)||(37605821-37605876)
chr4 (158-209)||(51579323-51579374)
chr4 (152-207)||(55281205-55281260)
chr4 (157-207)||(17044005-17044055)
chr4 (157-207)||(25164601-25164651)
chr4 (157-207)||(43749094-43749144)
chr4 (151-207)||(45996024-45996080)
chr4 (145-205)||(50498200-50498260)
[»] chr1 (8 HSPs)
chr1 (152-210)||(47571690-47571748)
chr1 (154-209)||(26040969-26041024)
chr1 (161-210)||(29731194-29731243)
chr1 (157-207)||(1994955-1995005)
chr1 (155-209)||(7178239-7178293)
chr1 (157-207)||(27325758-27325808)
chr1 (157-207)||(44797596-44797646)
chr1 (157-205)||(39858349-39858397)


Alignment Details
Target: chr8 (Bit Score: 139; Significance: 7e-73; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 4 - 154
Target Start/End: Original strand, 33904888 - 33905038
Alignment:
Q  4 cctccctccctcatcatagatacatatatagaatatgcatctaggatatatgtgagaaattagagactgaatcagccaacattaaatcagacttatgttg 103  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  33904888 cctccctccctcatcatagatacatatctagaatatgcatctaggatatatgggagaaattagagactgaataagccaacattaaatcagacttatgttg 33904987  T
Q  104 agttcttttaaaaacttttgcgttgatatccaagctttgtcttttataaaa 154  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33904988 agttcttttaaaaacttttgcgttgatatccaagctttgtcttttataaaa 33905038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 11904854 - 11904908
Alignment:
Q  156 ggtagtgatacataaaccaccttaagtgttatataccacttgtacacccacatat 210  Q
    |||||||||||||||||||||||| |||  |||||||||||||||||||||||||    
T  11904854 ggtagtgatacataaaccaccttaggtggcatataccacttgtacacccacatat 11904908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 155 - 210
Target Start/End: Original strand, 12142081 - 12142136
Alignment:
Q  155 gggtagtgatacataaaccaccttaagtgttatataccacttgtacacccacatat 210  Q
    ||||||||||||||||||||||||| |||  |||||||||||||||| ||||||||    
T  12142081 gggtagtgatacataaaccaccttaggtggcatataccacttgtacatccacatat 12142136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 210
Target Start/End: Original strand, 35200553 - 35200611
Alignment:
Q  152 aaagggtagtgatacataaaccaccttaagtgttatataccacttgtacacccacatat 210  Q
    ||||| |||||||||||||||||||||| |||  |||||  ||||||||||||||||||    
T  35200553 aaaggatagtgatacataaaccaccttaggtggcatatattacttgtacacccacatat 35200611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 209
Target Start/End: Complemental strand, 41075780 - 41075725
Alignment:
Q  154 agggtagtgatacataaaccaccttaagtgttatataccacttgtacacccacata 209  Q
    ||||| |||||||||| ||||||||| |||  || |||||||||||||||||||||    
T  41075780 agggtggtgatacatagaccaccttaggtgacatgtaccacttgtacacccacata 41075725  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 201
Target Start/End: Original strand, 45502670 - 45502708
Alignment:
Q  163 atacataaaccaccttaagtgttatataccacttgtaca 201  Q
    ||||||||||||||||||||| ||| |||||||||||||    
T  45502670 atacataaaccaccttaagtggtatgtaccacttgtaca 45502708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 207
Target Start/End: Complemental strand, 14342376 - 14342319
Alignment:
Q  150 taaaagggtagtgatacataaaccaccttaagtgttatataccacttgtacacccaca 207  Q
    |||||| ||||||||||||| ||||||||| |||  || |||||||| ||||||||||    
T  14342376 taaaagagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccaca 14342319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 205
Target Start/End: Original strand, 28897997 - 28898045
Alignment:
Q  157 gtagtgatacataaaccaccttaagtgttatataccacttgtacaccca 205  Q
    ||||||||||||| ||||||||| |||  ||||||||||| ||||||||    
T  28897997 gtagtgatacatagaccaccttaggtggcatataccacttatacaccca 28898045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 152 - 210
Target Start/End: Original strand, 28713674 - 28713732
Alignment:
Q  152 aaagggtagtgatacataaaccaccttaagtgttatataccacttgtacacccacatat 210  Q
    |||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||    
T  28713674 aaagggtagtgatacataaaccaccttaggtggcatataccacttgtacacccacatat 28713732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 38349642 - 38349586
Alignment:
Q  154 agggtagtgatacataaaccaccttaagtgttatataccacttgtacacccacatat 210  Q
    ||||||||||||||||||||| |||| |||  |||||||||||||||||||||||||    
T  38349642 agggtagtgatacataaaccatcttaggtggcatataccacttgtacacccacatat 38349586  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 209
Target Start/End: Complemental strand, 42974561 - 42974506
Alignment:
Q  154 agggtagtgatacataaaccaccttaagtgttatataccacttgtacacccacata 209  Q
    |||||||||||||||||||||||||| |||  || |||||||| ||||||||||||    
T  42974561 agggtagtgatacataaaccaccttaggtggcatgtaccacttatacacccacata 42974506  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 207
Target Start/End: Complemental strand, 46576422 - 46576372
Alignment:
Q  157 gtagtgatacataaaccaccttaagtgttatataccacttgtacacccaca 207  Q
    ||||||||||||| ||||||||| |||  || |||||||||||||||||||    
T  46576422 gtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccaca 46576372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 33496501 - 33496554
Alignment:
Q  157 gtagtgatacataaaccaccttaagtgttatataccacttgtacacccacatat 210  Q
    |||| |||||||| ||||||||| |||  || ||||||||||||||||||||||    
T  33496501 gtagggatacatagaccaccttaggtgacatgtaccacttgtacacccacatat 33496554  T

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Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 155 - 210
Target Start/End: Complemental strand, 43100390 - 43100335
Alignment:
Q  155 gggtagtgatacataaaccaccttaagtgttatataccacttgtacacccacatat 210  Q
    |||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||    
T  43100390 gggtagtgatacataaaccatcttaggtggtatataccacttgtacacccacatat 43100335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 154 - 210
Target Start/End: Original strand, 12248272 - 12248328
Alignment:
Q  154 agggtagtgatacataaaccaccttaagtgttatataccacttgtacacccacatat 210  Q
    |||||||||||||||||| ||||||| |||  |||||||||||||||| ||||||||    
T  12248272 agggtagtgatacataaatcaccttaggtggcatataccacttgtacatccacatat 12248328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 207
Target Start/End: Original strand, 13988249 - 13988299
Alignment:
Q  157 gtagtgatacataaaccaccttaagtgttatataccacttgtacacccaca 207  Q
    ||||||||||||| ||||||||| |||  || |||||||||||||||||||    
T  13988249 gtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccaca 13988299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 207
Target Start/End: Original strand, 36890379 - 36890429
Alignment:
Q  157 gtagtgatacataaaccaccttaagtgttatataccacttgtacacccaca 207  Q
    ||||||||||||| ||||||||| |||  || |||||||||||||||||||    
T  36890379 gtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccaca 36890429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 152 - 210
Target Start/End: Original strand, 40216406 - 40216464
Alignment:
Q  152 aaagggtagtgatacataaaccaccttaagtgttatataccacttgtacacccacatat 210  Q
    |||||||||||||| |||||||||||||  || ||||||||||||||||||||||||||    
T  40216406 aaagggtagtgatatataaaccaccttagatgatatataccacttgtacacccacatat 40216464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 209
Target Start/End: Original strand, 17823581 - 17823633
Alignment:
Q  157 gtagtgatacataaaccaccttaagtgttatataccacttgtacacccacata 209  Q
    |||||||||||||||||||||||  || ||| || ||||||||||||||||||    
T  17823581 gtagtgatacataaaccaccttagatggtatgtatcacttgtacacccacata 17823633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 207
Target Start/End: Complemental strand, 13697145 - 13697095
Alignment:
Q  157 gtagtgatacataaaccaccttaagtgttatataccacttgtacacccaca 207  Q
    ||||||||||||| ||||||||| |||  || |||||||||||||||||||    
T  13697145 gtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccaca 13697095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 207
Target Start/End: Complemental strand, 14945916 - 14945866
Alignment:
Q  157 gtagtgatacataaaccaccttaagtgttatataccacttgtacacccaca 207  Q
    ||||||||||||| ||||||||| |||  || |||||||||||||||||||    
T  14945916 gtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccaca 14945866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 151 - 210
Target Start/End: Complemental strand, 36674705 - 36674646
Alignment:
Q  151 aaaagggtagtgatacataaaccaccttaagtgttatataccacttgtacacccacatat 210  Q
    |||| |||||||||||||||||||||||| |||  ||||||||||||||||| |||||||    
T  36674705 aaaatggtagtgatacataaaccaccttaggtgacatataccacttgtacactcacatat 36674646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 206
Target Start/End: Complemental strand, 29915144 - 29915090
Alignment:
Q  152 aaagggtagtgatacataaaccaccttaagtgttatataccacttgtacacccac 206  Q
    |||| ||||||||||||| ||||||||| |||  |||||||||||||||||||||    
T  29915144 aaagagtagtgatacatagaccaccttatgtggcatataccacttgtacacccac 29915090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 206
Target Start/End: Complemental strand, 29964297 - 29964243
Alignment:
Q  152 aaagggtagtgatacataaaccaccttaagtgttatataccacttgtacacccac 206  Q
    |||| ||||||||||||| ||||||||| |||  |||||||||||||||||||||    
T  29964297 aaagagtagtgatacatagaccaccttatgtggcatataccacttgtacacccac 29964243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 48034986 - 48034937
Alignment:
Q  160 gtgatacataaaccaccttaagtgttatataccacttgtacacccacata 209  Q
    |||||||||||||||||||| |||  || |||||||||||||||||||||    
T  48034986 gtgatacataaaccaccttaggtgacatgtaccacttgtacacccacata 48034937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 207
Target Start/End: Original strand, 33288136 - 33288184
Alignment:
Q  159 agtgatacataaaccaccttaagtgttatataccacttgtacacccaca 207  Q
    ||||||||||| ||||||||| ||| ||| |||||||||||||||||||    
T  33288136 agtgatacatagaccaccttaggtggtatgtaccacttgtacacccaca 33288184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 207
Target Start/End: Complemental strand, 12224183 - 12224133
Alignment:
Q  157 gtagtgatacataaaccaccttaagtgttatataccacttgtacacccaca 207  Q
    ||||||||||||||||||||||| |||  || ||||| |||||||||||||    
T  12224183 gtagtgatacataaaccaccttaggtggcatgtaccatttgtacacccaca 12224133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 207
Target Start/End: Original strand, 23004758 - 23004808
Alignment:
Q  157 gtagtgatacataaaccaccttaagtgttatataccacttgtacacccaca 207  Q
    ||||||||||||| ||||||||| |||  || |||||||||||||||||||    
T  23004758 gtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccaca 23004808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 207
Target Start/End: Original strand, 50989205 - 50989255
Alignment:
Q  157 gtagtgatacataaaccaccttaagtgttatataccacttgtacacccaca 207  Q
    ||||||||||||| ||||||||| |||  || |||||||||||||||||||    
T  50989205 gtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccaca 50989255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 207
Target Start/End: Original strand, 51092337 - 51092387
Alignment:
Q  157 gtagtgatacataaaccaccttaagtgttatataccacttgtacacccaca 207  Q
    ||||||||||||| ||||||||| |||  || |||||||||||||||||||    
T  51092337 gtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccaca 51092387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 207
Target Start/End: Original strand, 38247801 - 38247850
Alignment:
Q  158 tagtgatacataaaccaccttaagtgttatataccacttgtacacccaca 207  Q
    |||||||||||| ||||||||| |||  || |||||||||||||||||||    
T  38247801 tagtgatacatagaccaccttaggtggcatgtaccacttgtacacccaca 38247850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 157 - 207
Target Start/End: Original strand, 16717992 - 16718042
Alignment:
Q  157 gtagtgatacataaaccaccttaagtgttatataccacttgtacacccaca 207  Q
    ||||||||||||||||||||||| |||  ||||||||||||||||||||||    
T  16717992 gtagtgatacataaaccaccttaggtggcatataccacttgtacacccaca 16718042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 12748217 - 12748266
Alignment:
Q  161 tgatacataaaccaccttaagtgttatataccacttgtacacccacatat 210  Q
    ||||||||||||||| ||| |||  |||||||||||||||||||||||||    
T  12748217 tgatacataaaccactttaggtggcatataccacttgtacacccacatat 12748266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 34792831 - 34792778
Alignment:
Q  157 gtagtgatacataaaccaccttaagtgttatataccacttgtacacccacatat 210  Q
    ||||||||||||| ||||||||| |||  || ||||||||||||||||||||||    
T  34792831 gtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacatat 34792778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 207
Target Start/End: Complemental strand, 14314166 - 14314116
Alignment:
Q  157 gtagtgatacataaaccaccttaagtgttatataccacttgtacacccaca 207  Q
    ||||||||||||| ||||||||| |||  || |||||||||||||||||||    
T  14314166 gtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccaca 14314116  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 207
Target Start/End: Complemental strand, 1244735 - 1244686
Alignment:
Q  158 tagtgatacataaaccaccttaagtgttatataccacttgtacacccaca 207  Q
    |||||||||||| |||||||||||||  || ||||||||||||| |||||    
T  1244735 tagtgatacatagaccaccttaagtggcatgtaccacttgtacatccaca 1244686  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 152 - 210
Target Start/End: Original strand, 48525323 - 48525381
Alignment:
Q  152 aaagggtagtgatacataaaccaccttaagtgttatataccacttgtacacccacatat 210  Q
    |||||||||||||||||||||||| ||| |||  |||||||||||||||| ||||||||    
T  48525323 aaagggtagtgatacataaaccactttaggtggcatataccacttgtacatccacatat 48525381  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 207
Target Start/End: Original strand, 3287087 - 3287136
Alignment:
Q  158 tagtgatacataaaccaccttaagtgttatataccacttgtacacccaca 207  Q
    ||||||||||||||||||||||  || ||| |||||||||||||||||||    
T  3287087 tagtgatacataaaccaccttagatggtatgtaccacttgtacacccaca 3287136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 207
Target Start/End: Complemental strand, 37605876 - 37605821
Alignment:
Q  152 aaagggtagtgatacataaaccaccttaagtgttatataccacttgtacacccaca 207  Q
    |||| ||||||||||||| ||||||||| |||  || |||||||||||||||||||    
T  37605876 aaagagtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccaca 37605821  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 209
Target Start/End: Original strand, 51579323 - 51579374
Alignment:
Q  158 tagtgatacataaaccaccttaagtgttatataccacttgtacacccacata 209  Q
    |||||||||||| ||||||||| |||  || |||||||||||||||||||||    
T  51579323 tagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacata 51579374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 207
Target Start/End: Original strand, 55281205 - 55281260
Alignment:
Q  152 aaagggtagtgatacataaaccaccttaagtgttatataccacttgtacacccaca 207  Q
    |||| ||||||||||||| ||||||||| |||  || |||||||||||||||||||    
T  55281205 aaagagtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccaca 55281260  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 207
Target Start/End: Original strand, 17044005 - 17044055
Alignment:
Q  157 gtagtgatacataaaccaccttaagtgttatataccacttgtacacccaca 207  Q
    ||||||||||||| ||||||||| |||  || |||||||||||||||||||    
T  17044005 gtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccaca 17044055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 207
Target Start/End: Complemental strand, 25164651 - 25164601
Alignment:
Q  157 gtagtgatacataaaccaccttaagtgttatataccacttgtacacccaca 207  Q
    ||||||||||||| ||||||||| |||  || |||||||||||||||||||    
T  25164651 gtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccaca 25164601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 207
Target Start/End: Original strand, 43749094 - 43749144
Alignment:
Q  157 gtagtgatacataaaccaccttaagtgttatataccacttgtacacccaca 207  Q
    ||||||||||||| ||||||||| |||  || |||||||||||||||||||    
T  43749094 gtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccaca 43749144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 207
Target Start/End: Complemental strand, 45996080 - 45996024
Alignment:
Q  151 aaaagggtagtgatacataaaccaccttaagtgttatataccacttgtacacccaca 207  Q
    ||||| ||||||||||||| |||| |||| |||  || |||||||||||||||||||    
T  45996080 aaaagagtagtgatacatagaccatcttaggtggcatgtaccacttgtacacccaca 45996024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 205
Target Start/End: Original strand, 50498200 - 50498260
Alignment:
Q  145 ttttataaaagggtagtgatacataaaccaccttaagtgttatataccacttgtacaccca 205  Q
    ||||||||||| ||||||||||||| | ||||||| ||  ||| |||||||| ||||||||    
T  50498200 ttttataaaagagtagtgatacatagatcaccttaggtagtatgtaccacttatacaccca 50498260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 152 - 210
Target Start/End: Complemental strand, 47571748 - 47571690
Alignment:
Q  152 aaagggtagtgatacataaaccaccttaagtgttatataccacttgtacacccacatat 210  Q
    |||||||||||||| ||||||||||||| |||  |||| ||||||||||||||||||||    
T  47571748 aaagggtagtgatatataaaccaccttaggtgacatatgccacttgtacacccacatat 47571690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 209
Target Start/End: Original strand, 26040969 - 26041024
Alignment:
Q  154 agggtagtgatacataaaccaccttaagtgttatataccacttgtacacccacata 209  Q
    |||||||||||||| ||||||||||| |||  || |||||||||||||||||||||    
T  26040969 agggtagtgatacacaaaccaccttaggtggcatgtaccacttgtacacccacata 26041024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 29731194 - 29731243
Alignment:
Q  161 tgatacataaaccaccttaagtgttatataccacttgtacacccacatat 210  Q
    ||||||||||||||||||| |||  |||||||||| ||||||||||||||    
T  29731194 tgatacataaaccaccttaggtggcatataccactagtacacccacatat 29731243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 207
Target Start/End: Original strand, 1994955 - 1995005
Alignment:
Q  157 gtagtgatacataaaccaccttaagtgttatataccacttgtacacccaca 207  Q
    ||||||||||||| ||||||||| |||  || |||||||||||||||||||    
T  1994955 gtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccaca 1995005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 209
Target Start/End: Complemental strand, 7178293 - 7178239
Alignment:
Q  155 gggtagtgatacataaaccaccttaagtgttatataccacttgtacacccacata 209  Q
    ||||||||||||||| ||||||||| |||  || ||||| |||||||||||||||    
T  7178293 gggtagtgatacatagaccaccttaggtgacatgtaccatttgtacacccacata 7178239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 207
Target Start/End: Complemental strand, 27325808 - 27325758
Alignment:
Q  157 gtagtgatacataaaccaccttaagtgttatataccacttgtacacccaca 207  Q
    ||||||||||||| ||||||||| |||  || |||||||||||||||||||    
T  27325808 gtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccaca 27325758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 207
Target Start/End: Complemental strand, 44797646 - 44797596
Alignment:
Q  157 gtagtgatacataaaccaccttaagtgttatataccacttgtacacccaca 207  Q
    ||||||||||||| ||||||||| |||  || |||||||||||||||||||    
T  44797646 gtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccaca 44797596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 205
Target Start/End: Original strand, 39858349 - 39858397
Alignment:
Q  157 gtagtgatacataaaccaccttaagtgttatataccacttgtacaccca 205  Q
    ||||||||||||| ||||||||| |||  ||||||||||| ||||||||    
T  39858349 gtagtgatacatagaccaccttaggtggcatataccacttatacaccca 39858397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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