View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5052-Insertion-1 (Length: 1085)
Name: NF5052-Insertion-1
Description: NF5052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5052-Insertion-1 |
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Alignment Details
Target: chr2 (Bit Score: 528; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 417 - 1025
Target Start/End: Complemental strand, 13714020 - 13713396
Alignment:
| Q |
417 |
atttccatcattctttcacatcaacagtggtacttgcaagccaagttttaggtgaagtaaacatttttatttatgcaagtgtattatagttatttggttt |
516 |
Q |
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| T |
13714020 |
atttccatcattctttcacatcaacagtggtacttgcaagccaagttttaggtgaagtaaacatttttatttatgcaagtgtattatagttatttggttt |
13713921 |
T |
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| Q |
517 |
ggtatgtatgcatacacaatttgtccaaactaaacaagcttg------------agaatccattaatctcaaaactaaaaacacatacaatatgaatctc |
604 |
Q |
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| T |
13713920 |
ggtatgtatgcatacacaatttgtccaaattaaacaagcttgcacacaggcttgagaatccattaatctcaaaactaaaaacacatacaatatgaatctc |
13713821 |
T |
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| Q |
605 |
tctgtatactataacatatatacagaatggccacatccatttatttaattcacattaaacaccacacttcttatctatcttaccttacttgtcatcaaaa |
704 |
Q |
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| T |
13713820 |
tctgtatactataacatatatacagaatggccacatccatttatttaattcacattaaacaccacacttcttatctatcttaccttacttgtcatcaaaa |
13713721 |
T |
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| Q |
705 |
ctaccatggttgaagctcaatggcacttcaaaaggactaatattaaaaggcctctgaccaatataattaccaggtggatcatagttacaactaataatgg |
804 |
Q |
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| T |
13713720 |
ctaccatggttgaagctcaatggcacttcaaaaggactaatatcaaaaggcctctgaccaatataattaccaggtggatcatagttacaactaataatgg |
13713621 |
T |
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| Q |
805 |
tgctacggccatcattacactttaccttagcacatccaacccgaaccgaatcgcgccagacaacttgagtataatgtccacactgataaccagcagcaca |
904 |
Q |
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| T |
13713620 |
tgctacgaccatcattacacttaaccttagcacatccaacccgaaccgaatcgcgccagacaacttgagtataatgtccacactgataaccaacagcaca |
13713521 |
T |
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| Q |
905 |
tgaattactgttgtaattatagtatttcttctctccgatccacatggtaacagcagctgttcctgtcatgtca-cactgct-catgctaagttttct-ca |
1001 |
Q |
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| T |
13713520 |
tgaattactgttgtaattatagtacttcttctctccgatccacatggtaacagcagctgttcctgtcatgtcaccactgctccatgctaagttttctcca |
13713421 |
T |
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| Q |
1002 |
tatggaccctt-gagtgtaccattt |
1025 |
Q |
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| T |
13713420 |
tatggacccttggagtgtaccattt |
13713396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 7e-49
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 13714116 - 13714013
Alignment:
| Q |
8 |
tttagtacattatgtgtctcacctattcaagtggaaaggggtcatattggagttgttagaaaagagaattttgaagcagccactaaaagaggagctattc |
107 |
Q |
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| T |
13714116 |
tttagtacattatgtgtctcacctattcaagtggaaaggggtcatattggagttgttagaaaagagaattttgaagcagccactaaaagaggagctattt |
13714017 |
T |
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| Q |
108 |
ccat |
111 |
Q |
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|||| |
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| T |
13714016 |
ccat |
13714013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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