View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5052-Insertion-11 (Length: 62)
Name: NF5052-Insertion-11
Description: NF5052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5052-Insertion-11 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 52; Significance: 1e-21; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-21
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 2592304 - 2592253
Alignment:
| Q |
11 |
acaacacctaaggctagccctccacctaaggctagtactccaccaccttcga |
62 |
Q |
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| T |
2592304 |
acaacacctaaggctagccctccacctaaggctagtactccaccaccttcga |
2592253 |
T |
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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.000000000004
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 2578579 - 2578536
Alignment:
| Q |
17 |
cctaaggctagccctccacctaaggctagtactccaccaccttc |
60 |
Q |
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| T |
2578579 |
cctacggctagccctccacctaaggctagtactccacctccttc |
2578536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 60
Target Start/End: Complemental strand, 2578652 - 2578614
Alignment:
| Q |
22 |
ggctagccctccacctaaggctagtactccaccaccttc |
60 |
Q |
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| T |
2578652 |
ggctagccctccacctaaggctagtactccacctccttc |
2578614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 2600055 - 2600011
Alignment:
| Q |
11 |
acaacacctaaggctagccctccacctaaggctagtactccacca |
55 |
Q |
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| T |
2600055 |
acaacacctaaggctagccctccacctacggctataactccacca |
2600011 |
T |
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