View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5052-Insertion-3 (Length: 1014)
Name: NF5052-Insertion-3
Description: NF5052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5052-Insertion-3 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 407; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 176 - 602
Target Start/End: Complemental strand, 16435166 - 16434740
Alignment:
| Q |
176 |
aaagggcgaaaagaattctaaccttttgagaaaggaagaaccaaaacaacctgcatagtgacattatttggaggaagctgcaaacgaagaggataaagct |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
16435166 |
aaagggcgaaaagaattctaaccttttgagaaaggaagaaccaaaacaacctgcatagtgacattatttggaggaagctgcaaacgaagagggtaaagct |
16435067 |
T |
|
| Q |
276 |
ttccattcaaaggactcttagtacacacaatgattccctctaaccctgtctcttcctcaaacttcttgctcaattcctcaactccattccctttgaaaac |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
16435066 |
ttccattcaaaggactcttagtacacacaatgattccctctaaccctgtctcttcctcaaacttcttgctcaattcttcaactccattccctttgaaaac |
16434967 |
T |
|
| Q |
376 |
caaagaatatccctgcacaccttcatcacttacttctccatcatcttcagcaacatagtagtagataattcgcccctccatcttcctaggtgatgcatca |
475 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
16434966 |
caaagaatatccctgcacaccttcatcacttacttctgcatcatcttcagcaacatagtagtagataattcgcccctccatcttcctaggagatgcatca |
16434867 |
T |
|
| Q |
476 |
tccttcgactgcaaataaaaccaatcacaattaaccaaagaagcaaaaaaccaaataaaatatacttcgttcgggttcgaaccgaggactttaactcatt |
575 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
16434866 |
tccttcgactgcaaataaaaccaatcacaattaaccaaagaagcaaaaaaccaaataaaatatacttggttcgggttcgaaccgaggactttaactcatt |
16434767 |
T |
|
| Q |
576 |
atcatttactttaaaccaattgagtta |
602 |
Q |
| |
|
||||||||||||||||||||||||||| |
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|
| T |
16434766 |
atcatttactttaaaccaattgagtta |
16434740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 634 - 970
Target Start/End: Complemental strand, 16434683 - 16434340
Alignment:
| Q |
634 |
atcaacatcacttcattaa-ctaaattggtgattgaatcaaaattccaagcttaaccaagataacccagataaaagatattgatacttctcaaacaataa |
732 |
Q |
| |
|
||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16434683 |
atcaacagcacttcataaaactaaattggtgattgaatcaaaattccaagcttaaccaagataacccagataaaagatattgatacttctcaaacaataa |
16434584 |
T |
|
| Q |
733 |
atcacacatatctaatttcaagcaaaataataacatcccagatnnnnnnnnttgacacttttaaatgaaccaannnnnnnnnn-----atagaaaaaaca |
827 |
Q |
| |
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|||||| ||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||| |
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| T |
16434583 |
atcaca--tatctgatttcaagcaaaataataacatcccagataaaaaaaattgacacttttgaatgaaccaatttttttttttttttatagaaaaaaca |
16434486 |
T |
|
| Q |
828 |
tatcctatgaagtgcttaaacaccgaccttgaccc-gacacgtcaactgtgataataatttgaaaaa-taacata-ttcaatataattatgtcacacaca |
924 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||| ||||||| ||||||||||| |||||||||||| |
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|
| T |
16434485 |
tatcctatgaagtgcttagacaccgaccttgaccccgacacgtcaactctgataataatttgaaaaaataacataattcaatataatcatgtcacacaca |
16434386 |
T |
|
| Q |
925 |
cccaatctgatgagcatttgttcttcatagtacatatctaatttca |
970 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16434385 |
cccaatctgatgagcatttgttcttcatagtacatatctaatttca |
16434340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 16435241 - 16435167
Alignment:
| Q |
8 |
gtaagaaatactgtaaaacaagaaagtaaatgatgtatataatacaatgcaagcactcaaattagaacaaccaaa |
82 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16435241 |
gtaagaaatactgtaaaacaagaaagtaaatgatgtatataatacaatgcaagcactcaaattagaacaaccaaa |
16435167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 8e-30; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 196 - 459
Target Start/End: Original strand, 25831917 - 25832180
Alignment:
| Q |
196 |
accttttgagaaaggaagaaccaaaacaacctgcatagtgacattatttggaggaagctgcaaacgaagaggataaagctttccattcaaaggactctta |
295 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||| || ||||| ||||||||||| |||||||||||||| ||||| ||||||||||||||||| | |
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|
| T |
25831917 |
accttttgagttaggaaggaccaaaacaacctgcatggtaacattgtttggaggaagatgcaaacgaagagggtaaagttttccattcaaaggacttcga |
25832016 |
T |
|
| Q |
296 |
gtacacacaatgattccctctaaccctgtctcttcctcaaacttcttgctcaattcctcaactccattccctttgaaaaccaaagaatatccctgcacac |
395 |
Q |
| |
|
|||||||||| | ||| || | |||||||||||| | ||||| ||| | ||| || ||||||| ||||| ||||| ||||| ||||||||| |
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|
| T |
25832017 |
ctacacacaataactccgtcaagtcctgtctcttccacgaacttacgagtcagctgctcgacgtcattcccattgaacaccaaggaatagccctgcacat |
25832116 |
T |
|
| Q |
396 |
cttcatcacttacttctccatcatcttcagcaacatagtagtagataattcgcccctccatctt |
459 |
Q |
| |
|
|||||| || ||||||| ||| |||||||||| |||||| ||| ||| |||||||||||| |
|
|
| T |
25832117 |
tctcatcatccacatctccattatcctcagcaacatggtagtatatagttctcccctccatctt |
25832180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 196 - 306
Target Start/End: Original strand, 25466188 - 25466296
Alignment:
| Q |
196 |
accttttgagaaaggaagaaccaaaacaacctgcatagtgacattatttggaggaagctgcaaacgaagaggataaagctttccattcaaaggactctta |
295 |
Q |
| |
|
|||||||||| | ||||| ||||||||||||||||| || ||||| ||||||||||| ||||||||||||| ||||| ||||||||||||||||| | | |
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|
| T |
25466188 |
accttttgaggagggaaggaccaaaacaacctgcatggtaacattgtttggaggaagatgcaaacgaagag--taaagttttccattcaaaggactttga |
25466285 |
T |
|
| Q |
296 |
gtacacacaat |
306 |
Q |
| |
|
|||||||||| |
|
|
| T |
25466286 |
ttacacacaat |
25466296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 196 - 291
Target Start/End: Original strand, 25565827 - 25565922
Alignment:
| Q |
196 |
accttttgagaaaggaagaaccaaaacaacctgcatagtgacattatttggaggaagctgcaaacgaagaggataaagctttccattcaaaggact |
291 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||| || ||||| ||||||||||| ||||| |||||| | ||||| ||||||||||||||||| |
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|
| T |
25565827 |
accttttgaggaaggaaggaccaaaacaacctgcatggtaacattgtttggaggaagatgcaagcgaagatggtaaagttttccattcaaaggact |
25565922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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