View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5052-Insertion-4 (Length: 990)
Name: NF5052-Insertion-4
Description: NF5052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5052-Insertion-4 |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 496 - 972
Target Start/End: Complemental strand, 50708775 - 50708314
Alignment:
| Q |
496 |
tatttatttgaatctaacttctgttgagatttctgtaaggcataaaaaatgaat-ctcttcttttaaatgaattttctttatatataagagttgaagatt |
594 |
Q |
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|||||| ||||||||||||||||| | |||||| |||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||| ||||| |
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| T |
50708775 |
tatttaattgaatctaacttctgtcgggatttccgtaaggcataaaaaatgaattctcttcttttaaataaatttt-tttatatataagagttggagatt |
50708677 |
T |
|
| Q |
595 |
gaatcgatgaccatttagttaaggagtccaagtcactttcaactataaattcatcggtaataaaacttttcataattctaatttcccaagcttcaagata |
694 |
Q |
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| T |
50708676 |
gaatcgatgaccatttaattaaggagtccaattcactttcaactataaatttatcagtaataaaacttttcgtaattctaatttcccaagcttcacgata |
50708577 |
T |
|
| Q |
695 |
cataataaaatagatgtcatcgaaaagaaacatttcccacaaaaagagggcttgataaaagttaaaaatacatccacctcttaagcttatctctatctag |
794 |
Q |
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| T |
50708576 |
cat-----------------cgaaaagaaacatttcccacaaaaagagggcttgataaaagttaaaaatacatccacctcttaagcttatctctatctag |
50708494 |
T |
|
| Q |
795 |
accgtttggtaagaaaagaagaacctaggttgaactgtttggtcccaacataaaatatagtgacacaataattggtcggtcccatatatgtat-tatttt |
893 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||| |
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| T |
50708493 |
accgtttggtaagaaaagaagaacctaggttgaactgtttggtcccaacataaaatatagtgacacaataattggtcggtcccatccatatatgtatttt |
50708394 |
T |
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| Q |
894 |
caggtgttataaaagctcgatttggccaaagtgcctaaaacttc-aaatttatccattgctttaatgtcctagctctccc |
972 |
Q |
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| T |
50708393 |
caggtgttataaaagctgaatttggccaaagtgcctaaaacttcaaaatttatccattgctttaatgtcctagctctccc |
50708314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 86 - 382
Target Start/End: Complemental strand, 50710767 - 50710465
Alignment:
| Q |
86 |
gaaagacactccaagcaaaaatacaaactgatatataatatttttaccaagaaaataaccttttcaaaaactaat-------atatgaaaaaatatttat |
178 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
50710767 |
gaaagacactccaaacaaaaatacaaactgatatataatatttt-accaagaaaataaccttttcaaaaactaatccgtttcatatgaaaaaatatttac |
50710669 |
T |
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| Q |
179 |
caccaccaccgtccaccgcaccataaattgcgtatcctattcaaatgtttgcagtttctcaccgacatcaaaataggtttaaaatcctaggtataaaata |
278 |
Q |
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| T |
50710668 |
caccaccaccgtccaccgcaccataaattgcgtatcctgttcaaatgtttgctgtttctcaccgacatcaaaataggtttaaaatcctaggtataaaata |
50710569 |
T |
|
| Q |
279 |
atgatgccattctaacaaaagaataagaatgagaataaaccacccagtcccnnnnnnncgaataataccagtaccnnnnnnntgtcaaactgacccgacc |
378 |
Q |
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| T |
50710568 |
atgatgccattctaacaaaagaataagaatgagaataaaccacccagtcccaaaaaatcgaataataccagtaccaaaaaaatgtcaaactgacctgacc |
50710469 |
T |
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| Q |
379 |
cata |
382 |
Q |
| |
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|||| |
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| T |
50710468 |
cata |
50710465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 50711639 - 50711572
Alignment:
| Q |
8 |
catgcttcagagttaacttaccttgttttgtattttatatatatgcgcaccgcgmawatagtataggaag |
77 |
Q |
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||||||||||||| |||||||||| |||||||||| | ||||||||||||||| | |||||||| |||| |
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| T |
50711639 |
catgcttcagagtcaacttaccttattttgtattt--tgtatatgcgcaccgcgcatatagtataagaag |
50711572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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