View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5052-Insertion-6 (Length: 718)
Name: NF5052-Insertion-6
Description: NF5052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5052-Insertion-6 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 586; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 586; E-Value: 0
Query Start/End: Original strand, 8 - 718
Target Start/End: Complemental strand, 51115158 - 51114437
Alignment:
| Q |
8 |
gaaagttgatcaaaaactaaatagaaacaacaaaatatacaccaaaatcttcctgagtcatagttttgtaagccatccattgtatttgaaatattgatac |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
51115158 |
gaaagttgatcaaaaactaaatagaaacaacaaaatgtacacctaaatcttcctgagtcatagttttgtaagccatccattgtatttgaaatattgaaac |
51115059 |
T |
|
| Q |
108 |
agagaacaaccacctaatttccaaactcaggatttcctttttgataactaacgtgcattcaacactatctaaggttgctactagattttgattatacctt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51115058 |
agagaacaaccacctaatttccaaactcaggatttcctttttgataactaacgtgcattcaacactatctaaggttgctactagattttgattatacctt |
51114959 |
T |
|
| Q |
208 |
gttattgaccatattaaaactaattaaacactcgaatcaatgcagaaaagaatgagtagtttgtcaatagcttcaaaaaccaatatcagacaaagcataa |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
51114958 |
gttattgaccatattaaaactaattaaacactcgaatcaatgcagaaaagaatgagtagtcagtcaatagtttcaaaaaccaatatcagacaaagcataa |
51114859 |
T |
|
| Q |
308 |
tttcaaaataagaaacataatatgcaggcgtatgcagaaagatgccaattttcgatggaactttcaacacaacgaggaattagaagaatgttgattagtt |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
51114858 |
tttcaaaataagaaacataatatgcaggcgtatgcagaaagatgccaattttcgatggaactttcaacacgacgaggaattagaagaatattgattagtt |
51114759 |
T |
|
| Q |
408 |
ttaagatagtttcacannnnnnnnaagaagaagtcaaactaacacaccaaaattggcact-aagaggatcaaaccagagacttgagaagaacacactccg |
506 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
51114758 |
ttaagatagtttcacattttttttaagaagaagtcaaactaacacaccaaaattggcactgaagaggatcaaactagagacttgagaagaacacactccg |
51114659 |
T |
|
| Q |
507 |
atgtcacattttaatgtaggtttcattttgttttgtaccttatttgccgtgtgaaatgaact----------acatttcaagcatgcattctatctaact |
596 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
51114658 |
atgtcacattttaatgtaggtttcattttgttttgtatcttatttgccgtgtgaaatgaactacagacatacacatttcaagcatgcattctatctaact |
51114559 |
T |
|
| Q |
597 |
tctaatccaacacataaataaggttcaaacaccaatggacatgaataattagcagaatattttctcagatatctnnnnnnngaaagagataatcaagaat |
696 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
51114558 |
tctaatccaacaaataaataaggttcaaacaccaatggacatgaataatttgcagaatattttctcagatatctaaaaaaagaaagagataatcaagaat |
51114459 |
T |
|
| Q |
697 |
taaatttgtactagaataatat |
718 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
51114458 |
taaatttgtactagaataatat |
51114437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 288 - 371
Target Start/End: Complemental strand, 5768905 - 5768822
Alignment:
| Q |
288 |
caatatcagacaaagcataatttcaaaataagaaacataatatgcaggcgtatgcagaaagatgccaattttcgatggaacttt |
371 |
Q |
| |
|
|||||||| |||||| |||| ||||||||||||||||||||||| || | || ||||||||||||||| |||| |||||||||| |
|
|
| T |
5768905 |
caatatcaaacaaaggataacttcaaaataagaaacataatatgtagccataagcagaaagatgccaaatttccatggaacttt |
5768822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 7e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 46 - 119
Target Start/End: Complemental strand, 1119198 - 1119125
Alignment:
| Q |
46 |
acaccaaaatcttcctgagtcatagttttgtaagccatccattgtatttgaaatattgatacagagaacaacca |
119 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| | ||||||| ||||||| ||| |||||||||||||| |
|
|
| T |
1119198 |
acaccaaaatcttcctgagtcgtagttttgtaagccgtacattgtaactgaaatactgaaacagagaacaacca |
1119125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 235 - 379
Target Start/End: Complemental strand, 1118800 - 1118657
Alignment:
| Q |
235 |
acactcgaatcaatgcagaaaagaatgagtagtttgtcaatagcttcaaaaaccaatatcagacaaagcataatttcaaaataagaaacataatatgcag |
334 |
Q |
| |
|
|||||| |||||| ||||| ||||| |||| | ||||||| |||||||||| |||| ||||||||||||||||| | |||||||||||||||||| | |
|
|
| T |
1118800 |
acactcaaatcaaagcagagaagaaacagtacgtagtcaatatcttcaaaaac-aataccagacaaagcataatttaagaataagaaacataatatgtgg |
1118702 |
T |
|
| Q |
335 |
gcgtatgcagaaagatgccaattttcgatggaactttcaacacaa |
379 |
Q |
| |
|
| | |||||||||||| |||||| |||||| | ||||||||| |
|
|
| T |
1118701 |
gtctcagcagaaagatgcatattttccatggaattatcaacacaa |
1118657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 83
Target Start/End: Original strand, 29020664 - 29020718
Alignment:
| Q |
29 |
tagaaacaacaaaatatacaccaaaatcttcctgagtcatagttttgtaagccat |
83 |
Q |
| |
|
|||| |||||| || ||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
29020664 |
tagagacaacacaaaatacaccaaaatcttcctgagtcatagttctgtaaaccat |
29020718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University