View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5052-Insertion-7 (Length: 686)
Name: NF5052-Insertion-7
Description: NF5052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5052-Insertion-7 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 474; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 161 - 686
Target Start/End: Complemental strand, 8926063 - 8925538
Alignment:
| Q |
161 |
cacttcaatattcagctatatatgaatgagagagtatatgctgtgaggagtgcgattcttaaggtgcaatgtaatgtatttataggcatccaacttgaag |
260 |
Q |
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||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8926063 |
cacttcaatattcagctatatgtgaatgagag--tatatgctgtgaggagtgcgattcttaaggtgcaatgtaatgtatttataggcatccaacttgaag |
8925966 |
T |
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| Q |
261 |
gaatggttaagaatggaaaaactatttatttaattaacaaaagtattgtattattgtcacaaattctaatgtgtatatatgcatcaagaggataattctt |
360 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8925965 |
gaatggttaagaatggaaaaactatttatttaattaacaaaagtattgtattattgtcacaaattctaatgtgtatatatgcatcaagaggataattctt |
8925866 |
T |
|
| Q |
361 |
acaaattaatagactaatatagtaatacaaaacataaaccaaatgcaaatgaattgacttagtataaaataaaataattcttacatatatttgatgccta |
460 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
8925865 |
acaaattaatagactaatatagtaatacaaaacataaaacaaatgcaaatgaattgatttagtataaaataaaataattcttacatatatttgatgccta |
8925766 |
T |
|
| Q |
461 |
taaatgactggatttagttttgcttatattaatttattttatgtgatttttatcatttcaaaatataaaattgttgttgttcat--aaacaattataaag |
558 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
8925765 |
taaatgactggattttgttttgcttatattaatttattttatgtgatttttatcatttcaaaatataaaattgttgttgtccataaaaacaattataaag |
8925666 |
T |
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| Q |
559 |
aaacaaataatgttttttattataaaatatatcatgcaattcattaatcatattaaatattttttccacctatgtagtccaacttaactaaagagataag |
658 |
Q |
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| T |
8925665 |
aaacaaataatgttttttattataaaatatatcatgcaatacattaatcatattaaatattttttccacctatgtagtccgacttaactaaagagataag |
8925566 |
T |
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| Q |
659 |
tctttgtaattgtccgcatgtcatccag |
686 |
Q |
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| T |
8925565 |
tctttgtagttgtccgcatgtcatccag |
8925538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 8926217 - 8926113
Alignment:
| Q |
7 |
actagcacctcaaagaagccccagttctcacaagcatctttgatcatctccatggtagcttttctctcttctgtgttaagcttccccatgtcaacaactg |
106 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8926217 |
actagtacctcaaagaagccccagttctcacaagcatctttgatcatctccatggtagcttttctctcttctgtgttaagcttccccatgtcaacaactg |
8926118 |
T |
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| Q |
107 |
gaaag |
111 |
Q |
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||||| |
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| T |
8926117 |
gaaag |
8926113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 55522810 - 55522713
Alignment:
| Q |
13 |
acctcaaagaagccccagttctcacaagcatctttgatcatctccatggtagcttttctctcttctgtgttaagcttccccatgtcaacaactggaaa |
110 |
Q |
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| T |
55522810 |
acctcaaagaaaccccaattttcacaagcatcttttatgatctccatggttgatgctttctcttcagtgttaagattcttcatgtcaactactggaaa |
55522713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 37628757 - 37628696
Alignment:
| Q |
13 |
acctcaaagaagccccagttctcacaagcatctttgatcatctccatggtagcttttctctc |
74 |
Q |
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| T |
37628757 |
acctcaaagaatccccagttttcacaagcatccttgattttctccatagtagcttttctctc |
37628696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 36872707 - 36872765
Alignment:
| Q |
13 |
acctcaaagaagccccagttctcacaagcatctttgatcatctccatggtagcttttct |
71 |
Q |
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||||||||||| ||||| |||||||||||||| || || ||||||||||| ||||||| |
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| T |
36872707 |
acctcaaagaatccccaattctcacaagcatccttaattttctccatggtatcttttct |
36872765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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