View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5052_high_10 (Length: 249)

Name: NF5052_high_10
Description: NF5052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5052_high_10
NF5052_high_10
[»] chr3 (5 HSPs)
chr3 (83-239)||(41358787-41358943)
chr3 (3-70)||(41358594-41358661)
chr3 (3-63)||(41218351-41218411)
chr3 (8-63)||(33179109-33179164)
chr3 (3-63)||(53068323-53068383)
[»] chr2 (10 HSPs)
chr2 (4-63)||(17249394-17249453)
chr2 (7-63)||(33909325-33909381)
chr2 (7-63)||(25563011-25563067)
chr2 (3-63)||(12000599-12000659)
chr2 (3-70)||(16221020-16221087)
chr2 (3-63)||(304104-304164)
chr2 (3-51)||(17148868-17148916)
chr2 (35-70)||(39926369-39926404)
chr2 (8-51)||(45444450-45444493)
chr2 (8-62)||(15651284-15651338)
[»] chr1 (8 HSPs)
chr1 (3-63)||(24646128-24646188)
chr1 (4-63)||(34459184-34459243)
chr1 (7-65)||(6802080-6802138)
chr1 (7-63)||(9527120-9527176)
chr1 (3-63)||(24745487-24745547)
chr1 (4-63)||(49898451-49898510)
chr1 (3-63)||(4642050-4642110)
chr1 (14-62)||(4163481-4163528)
[»] chr8 (4 HSPs)
chr8 (4-63)||(13243169-13243228)
chr8 (4-63)||(39431643-39431702)
chr8 (3-63)||(34282877-34282937)
chr8 (6-38)||(31500808-31500840)
[»] chr7 (9 HSPs)
chr7 (7-68)||(41862342-41862403)
chr7 (3-63)||(3012385-3012445)
chr7 (3-63)||(4843379-4843439)
chr7 (3-63)||(19377470-19377530)
chr7 (3-63)||(28694020-28694080)
chr7 (4-63)||(21932760-21932819)
chr7 (3-63)||(21688190-21688250)
chr7 (3-62)||(38128973-38129032)
chr7 (8-63)||(814970-815025)
[»] chr5 (8 HSPs)
chr5 (3-63)||(13942748-13942808)
chr5 (3-63)||(8214632-8214692)
chr5 (3-70)||(767350-767417)
chr5 (4-63)||(16667463-16667522)
chr5 (5-63)||(15503991-15504049)
chr5 (7-63)||(21069084-21069140)
chr5 (3-63)||(17192638-17192698)
chr5 (3-63)||(12267378-12267438)
[»] chr4 (8 HSPs)
chr4 (3-63)||(49745115-49745175)
chr4 (3-70)||(36947587-36947654)
chr4 (3-63)||(25237652-25237712)
chr4 (4-51)||(52373826-52373873)
chr4 (1-63)||(41972415-41972477)
chr4 (4-62)||(50099917-50099975)
chr4 (3-51)||(2521911-2521959)
chr4 (7-63)||(8901879-8901934)
[»] chr6 (2 HSPs)
chr6 (3-63)||(2836180-2836240)
chr6 (3-63)||(34188858-34188918)
[»] scaffold0021 (1 HSPs)
scaffold0021 (3-50)||(112197-112244)


Alignment Details
Target: chr3 (Bit Score: 149; Significance: 8e-79; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 83 - 239
Target Start/End: Original strand, 41358787 - 41358943
Alignment:
Q  83 ctagctgggggtggctccgtcccagattgtaaatacaatggtaatagttgcgtccaaatatatatttattgaaaatacaaagatcttagcaaataaacga 182  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41358787 ctagctgggggtggctccgtcccaaattataaatacaatggtaatagttgcgtccaaatatatatttattgaaaatacaaagatcttagcaaataaacga 41358886  T
Q  183 caatgttaggcaatgactatgtagatcatgaaaaatgtttcaatttttgtttagtat 239  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41358887 caatgttaggcaatgactatgtagatcatgaaaaatgtttcaatttttgtttagtat 41358943  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 41358594 - 41358661
Alignment:
Q  3 ctgcggatccaaaaatcctaaggtattacctcacctgagaacctaaatctttggcaaaatccgtagga 70  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  41358594 ctgcggatccaaaaatcctaaggtattacctcacctgagaacctaaatcattggcaaaatccgcagga 41358661  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 41218351 - 41218411
Alignment:
Q  3 ctgcggatccaaaaatcctaaggtattacctcacctgagaacctaaatctttggcaaaatc 63  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||  |||||||||||    
T  41218351 ctgcggatcctaaaatcctaaggtattacctcacatgagaacctaaattcttggcaaaatc 41218411  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 33179109 - 33179164
Alignment:
Q  8 gatccaaaaatcctaaggtattacctcacctgagaacctaaatctttggcaaaatc 63  Q
    ||||| ||||||||| |||||||||||||||| ||||||||||| |||||||||||    
T  33179109 gatcctaaaatcctatggtattacctcacctgggaacctaaatccttggcaaaatc 33179164  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 53068383 - 53068323
Alignment:
Q  3 ctgcggatccaaaaatcctaaggtattacctcacctgagaacctaaatctttggcaaaatc 63  Q
    ||||| |||| ||||||||||||||||| |||||||  ||||||||||  |||||||||||    
T  53068383 ctgcgaatcctaaaatcctaaggtattatctcacctaggaacctaaattcttggcaaaatc 53068323  T

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Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 17249453 - 17249394
Alignment:
Q  4 tgcggatccaaaaatcctaaggtattacctcacctgagaacctaaatctttggcaaaatc 63  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  17249453 tgcggatcctaaaatcctaaggtattacctcacctgagaacctaaatccttggcaaaatc 17249394  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 33909325 - 33909381
Alignment:
Q  7 ggatccaaaaatcctaaggtattacctcacctgagaacctaaatctttggcaaaatc 63  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  33909325 ggatcctaaaatcctatggtattacctcacctgagaacctaaatctttggaaaaatc 33909381  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 25563067 - 25563011
Alignment:
Q  7 ggatccaaaaatcctaaggtattacctcacctgagaacctaaatctttggcaaaatc 63  Q
    |||||| ||||||||| |||||||||||||||| ||||||||||| |||||||||||    
T  25563067 ggatcctaaaatcctatggtattacctcacctgggaacctaaatccttggcaaaatc 25563011  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 12000659 - 12000599
Alignment:
Q  3 ctgcggatccaaaaatcctaaggtattacctcacctgagaacctaaatctttggcaaaatc 63  Q
    |||||||||| |||||||||||||||||||||||||  | ||||| ||| |||||||||||    
T  12000659 ctgcggatcctaaaatcctaaggtattacctcacctagggacctatatccttggcaaaatc 12000599  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 16221020 - 16221087
Alignment:
Q  3 ctgcggatccaaaaatcctaaggtattacctcacctgagaacctaaatctttggcaaaatccgtagga 70  Q
    |||| ||||| ||||||||||||||||| |||||||| |||| |||||| || |||||||||| ||||    
T  16221020 ctgcagatcctaaaatcctaaggtattatctcacctgggaacttaaatccttagcaaaatccgcagga 16221087  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 304104 - 304164
Alignment:
Q  3 ctgcggatccaaaaatcctaaggtattacctcacctgagaacctaaatctttggcaaaatc 63  Q
    |||||||||| |||||| || ||| ||||||||| || ||||||||||| |||||||||||    
T  304104 ctgcggatcctaaaatcttatggtgttacctcacatgggaacctaaatccttggcaaaatc 304164  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 17148916 - 17148868
Alignment:
Q  3 ctgcggatccaaaaatcctaaggtattacctcacctgagaacctaaatc 51  Q
    |||||||||| ||||||||| |||||| ||||||||| |||||||||||    
T  17148916 ctgcggatcctaaaatcctatggtattccctcacctgggaacctaaatc 17148868  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 70
Target Start/End: Original strand, 39926369 - 39926404
Alignment:
Q  35 acctgagaacctaaatctttggcaaaatccgtagga 70  Q
    ||||||||||| ||||||||||||||||||||||||    
T  39926369 acctgagaaccaaaatctttggcaaaatccgtagga 39926404  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 51
Target Start/End: Original strand, 45444450 - 45444493
Alignment:
Q  8 gatccaaaaatcctaaggtattacctcacctgagaacctaaatc 51  Q
    ||||| ||||||||| |||||||||||||||| |||||||||||    
T  45444450 gatcctaaaatcctatggtattacctcacctgtgaacctaaatc 45444493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 15651338 - 15651284
Alignment:
Q  8 gatccaaaaatcctaaggtattacctcacctgagaacctaaatctttggcaaaat 62  Q
    ||||| |||||||||||| ||||||||||||  | ||||||||| ||||||||||    
T  15651338 gatcctaaaatcctaaggcattacctcacctagggacctaaatccttggcaaaat 15651284  T

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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 24646188 - 24646128
Alignment:
Q  3 ctgcggatccaaaaatcctaaggtattacctcacctgagaacctaaatctttggcaaaatc 63  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||    
T  24646188 ctgcggatccaaaaatccaaaggtattacctcacctgggaacctaaatccttggcaaaatc 24646128  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 34459243 - 34459184
Alignment:
Q  4 tgcggatccaaaaatcctaaggtattacctcacctgagaacctaaatctttggcaaaatc 63  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  34459243 tgcggatcctaaaatcctaaggtattacctcacctgagaacttaaatccttggcaaaatc 34459184  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 65
Target Start/End: Original strand, 6802080 - 6802138
Alignment:
Q  7 ggatccaaaaatcctaaggtattacctcacctgagaacctaaatctttggcaaaatccg 65  Q
    |||||| |||||| ||||||||||||||||||| ||||||||||| |||||||||||||    
T  6802080 ggatcctaaaatcgtaaggtattacctcacctgggaacctaaatccttggcaaaatccg 6802138  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 9527176 - 9527120
Alignment:
Q  7 ggatccaaaaatcctaaggtattacctcacctgagaacctaaatctttggcaaaatc 63  Q
    |||||| ||||||||||| |||||||||||||| ||||||||||| |||||||||||    
T  9527176 ggatcctaaaatcctaagatattacctcacctgggaacctaaatccttggcaaaatc 9527120  T

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Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 24745547 - 24745487
Alignment:
Q  3 ctgcggatccaaaaatcctaaggtattacctcacctgagaacctaaatctttggcaaaatc 63  Q
    |||||||||| ||||||||| ||||||||||||||| | |||||||||| |||||||||||    
T  24745547 ctgcggatcctaaaatcctagggtattacctcaccttaaaacctaaatccttggcaaaatc 24745487  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 49898510 - 49898451
Alignment:
Q  4 tgcggatccaaaaatcctaaggtattacctcacctgagaacctaaatctttggcaaaatc 63  Q
    ||||||||| |||||||||||||||||||||||||  | ||||||||| |||||||||||    
T  49898510 tgcggatcctaaaatcctaaggtattacctcacctagggacctaaatccttggcaaaatc 49898451  T

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Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 4642050 - 4642110
Alignment:
Q  3 ctgcggatccaaaaatcctaaggtattacctcacctgagaacctaaatctttggcaaaatc 63  Q
    |||||||||| |||||||||||||||||||||||||   |||||||||| ||| |||||||    
T  4642050 ctgcggatcctaaaatcctaaggtattacctcacctcgaaacctaaatccttgacaaaatc 4642110  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 4163528 - 4163481
Alignment:
Q  14 aaaatcctaaggtattacctcacctgagaacctaaatctttggcaaaat 62  Q
    ||||| ||||||||||| ||||||||| |||||||||| ||||||||||    
T  4163528 aaaattctaaggtattatctcacctga-aacctaaatccttggcaaaat 4163481  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 13243228 - 13243169
Alignment:
Q  4 tgcggatccaaaaatcctaaggtattacctcacctgagaacctaaatctttggcaaaatc 63  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  13243228 tgcggatcctaaaatcctaaggtattacctcacctgggaacctaaatccttggcaaaatc 13243169  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 39431643 - 39431702
Alignment:
Q  4 tgcggatccaaaaatcctaaggtattacctcacctgagaacctaaatctttggcaaaatc 63  Q
    ||||| ||| ||||||||| |||||||||||||||  |||||||||||||||||||||||    
T  39431643 tgcgggtccgaaaatcctatggtattacctcacctaggaacctaaatctttggcaaaatc 39431702  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 34282877 - 34282937
Alignment:
Q  3 ctgcggatccaaaaatcctaaggtattacctcacctgagaacctaaatctttggcaaaatc 63  Q
    |||||||||| ||||||||| |||||||||||||||  |||| |||||| |||||||||||    
T  34282877 ctgcggatcctaaaatcctatggtattacctcacctcggaacttaaatccttggcaaaatc 34282937  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 31500808 - 31500840
Alignment:
Q  6 cggatccaaaaatcctaaggtattacctcacct 38  Q
    ||||||| |||||||||||||||||||||||||    
T  31500808 cggatcctaaaatcctaaggtattacctcacct 31500840  T

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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 68
Target Start/End: Original strand, 41862342 - 41862403
Alignment:
Q  7 ggatccaaaaatcctaaggtattacctcacctgagaacctaaatctttggcaaaatccgtag 68  Q
    |||||| |||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||    
T  41862342 ggatcctaaaatcctaaggtaatacctcatctgagaacctaaatccttggcaaaatccgtag 41862403  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 3012445 - 3012385
Alignment:
Q  3 ctgcggatccaaaaatcctaaggtattacctcacctgagaacctaaatctttggcaaaatc 63  Q
    |||||||||| ||||||||| |||||||||||||||| ||||||| ||| |||||||||||    
T  3012445 ctgcggatcctaaaatcctatggtattacctcacctgggaacctatatccttggcaaaatc 3012385  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 4843439 - 4843379
Alignment:
Q  3 ctgcggatccaaaaatcctaaggtattacctcacctgagaacctaaatctttggcaaaatc 63  Q
    |||||||||| ||||||| || ||||||||||||||| ||||||||||| |||||||||||    
T  4843439 ctgcggatcctaaaatcccaatgtattacctcacctgggaacctaaatccttggcaaaatc 4843379  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 19377530 - 19377470
Alignment:
Q  3 ctgcggatccaaaaatcctaaggtattacctcacctgagaacctaaatctttggcaaaatc 63  Q
    |||||||||| |||||||||||||||||||||||||  | ||||||||| |||||||||||    
T  19377530 ctgcggatcctaaaatcctaaggtattacctcacctagggacctaaatccttggcaaaatc 19377470  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 28694020 - 28694080
Alignment:
Q  3 ctgcggatccaaaaatcctaaggtattacctcacctgagaacctaaatctttggcaaaatc 63  Q
    |||||||||| ||||||||| |||||||||||||||| ||||||||||| | |||||||||    
T  28694020 ctgcggatcctaaaatcctatggtattacctcacctgggaacctaaatcctgggcaaaatc 28694080  T

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Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 21932760 - 21932819
Alignment:
Q  4 tgcggatccaaaaatcctaaggtattacctcacctgagaacctaaatctttggcaaaatc 63  Q
    ||||||||||||||||||| ||||||||||||||||  |||||||||| ||| |||||||    
T  21932760 tgcggatccaaaaatcctatggtattacctcacctggaaacctaaatccttgacaaaatc 21932819  T

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Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 21688250 - 21688190
Alignment:
Q  3 ctgcggatccaaaaatcctaaggtattacctcacctgagaacctaaatctttggcaaaatc 63  Q
    |||||||||  ||||||||||||||||| ||||||||| |||||||||| || ||||||||    
T  21688250 ctgcggatcttaaaatcctaaggtattatctcacctgataacctaaatccttcgcaaaatc 21688190  T

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Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 38128973 - 38129032
Alignment:
Q  3 ctgcggatccaaaaatcctaaggtattacctcacctgagaacctaaatctttggcaaaat 62  Q
    |||||||||| ||||||||| | |||| ||||||||| ||||||||||| ||||||||||    
T  38128973 ctgcggatcctaaaatcctatgatattgcctcacctgggaacctaaatccttggcaaaat 38129032  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 814970 - 815025
Alignment:
Q  8 gatccaaaaatcctaaggtattacctcacctgagaacctaaatctttggcaaaatc 63  Q
    ||||| ||||| ||||||||||||||||| || ||||||||||  |||||||||||    
T  814970 gatcctaaaattctaaggtattacctcacttgggaacctaaattcttggcaaaatc 815025  T

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Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 13942748 - 13942808
Alignment:
Q  3 ctgcggatccaaaaatcctaaggtattacctcacctgagaacctaaatctttggcaaaatc 63  Q
    |||||||||| ||||||||||||||||||||||||||| || ||||||| |||||||||||    
T  13942748 ctgcggatcctaaaatcctaaggtattacctcacctgataatctaaatccttggcaaaatc 13942808  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 8214632 - 8214692
Alignment:
Q  3 ctgcggatccaaaaatcctaaggtattacctcacctgagaacctaaatctttggcaaaatc 63  Q
    |||||||||| |||||||||| |||||||||||||| |||||||||||| ||| |||||||    
T  8214632 ctgcggatcctaaaatcctaaagtattacctcacctaagaacctaaatccttgacaaaatc 8214692  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 767417 - 767350
Alignment:
Q  3 ctgcggatccaaaaatcctaaggtattacctcacctgagaacctaaatctttggcaaaatccgtagga 70  Q
    |||| ||||| |||||||||||||||||||||||||| ||| ||||||| ||||||||| | ||||||    
T  767417 ctgcagatcctaaaatcctaaggtattacctcacctgggaatctaaatccttggcaaaacctgtagga 767350  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 16667463 - 16667522
Alignment:
Q  4 tgcggatccaaaaatcctaaggtattacctcacctgagaacctaaatctttggcaaaatc 63  Q
    ||||||||| ||||||||| ||||||||||||| || ||||||||||| |||||||||||    
T  16667463 tgcggatcctaaaatcctatggtattacctcacatgggaacctaaatccttggcaaaatc 16667522  T

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Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 15504049 - 15503991
Alignment:
Q  5 gcggatccaaaaatcctaaggtattacctcacctgagaacctaaatctttggcaaaatc 63  Q
    |||||||| ||||||||| |||||||||||| ||| ||||||||||| |||||||||||    
T  15504049 gcggatcctaaaatcctatggtattacctcatctgggaacctaaatccttggcaaaatc 15503991  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 21069140 - 21069084
Alignment:
Q  7 ggatccaaaaatcctaaggtattacctcacctgagaacctaaatctttggcaaaatc 63  Q
    |||||| ||||||||| ||||| |||||||||  |||||||||||||||||||||||    
T  21069140 ggatcctaaaatcctatggtataacctcacctaggaacctaaatctttggcaaaatc 21069084  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 17192638 - 17192698
Alignment:
Q  3 ctgcggatccaaaaatcctaaggtattacctcacctgagaacctaaatctttggcaaaatc 63  Q
    |||||||||| ||||||| | |||||||||||| ||| ||||||||||| ||| |||||||    
T  17192638 ctgcggatcctaaaatccaatggtattacctcatctgggaacctaaatccttgacaaaatc 17192698  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 12267378 - 12267438
Alignment:
Q  3 ctgcggatccaaaaatcctaaggtattacctcacctgagaacctaaatctttggcaaaatc 63  Q
    |||||||||| ||||||||| |||||||||||||||  ||| ||||||   ||||||||||    
T  12267378 ctgcggatcctaaaatcctatggtattacctcacctacgaatctaaattcgtggcaaaatc 12267438  T

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Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 49745175 - 49745115
Alignment:
Q  3 ctgcggatccaaaaatcctaaggtattacctcacctgagaacctaaatctttggcaaaatc 63  Q
    |||||||||| |||||||||||||||||||||||||  ||||||||||| |||||||||||    
T  49745175 ctgcggatcctaaaatcctaaggtattacctcacctaggaacctaaatccttggcaaaatc 49745115  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 36947654 - 36947587
Alignment:
Q  3 ctgcggatccaaaaatcctaaggtattacctcacctgagaacctaaatctttggcaaaatccgtagga 70  Q
    |||||||||| ||||||||||||||||||| |||||| ||||||||||  ||||||||||||| ||||    
T  36947654 ctgcggatcctaaaatcctaaggtattaccacacctgggaacctaaattcttggcaaaatccgcagga 36947587  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 25237712 - 25237652
Alignment:
Q  3 ctgcggatccaaaaatcctaaggtattacctcacctgagaacctaaatctttggcaaaatc 63  Q
    ||||| |||| |||||| ||||||||||||||||||| ||||||||||| |||||||||||    
T  25237712 ctgcgaatcctaaaatcataaggtattacctcacctgggaacctaaatccttggcaaaatc 25237652  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 52373873 - 52373826
Alignment:
Q  4 tgcggatccaaaaatcctaaggtattacctcacctgagaacctaaatc 51  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||    
T  52373873 tgcggatcctaaaatcctaaggtattacctcacctgggaacctaaatc 52373826  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 41972415 - 41972477
Alignment:
Q  1 ttctgcggatccaaaaatcctaaggtattacctcacctgagaacctaaatctttggcaaaatc 63  Q
    |||||||||||| |||||| |||| |||||||||||||| |||||| |||| |||||||||||    
T  41972415 ttctgcggatcctaaaatcttaagatattacctcacctgggaaccttaatccttggcaaaatc 41972477  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 50099975 - 50099917
Alignment:
Q  4 tgcggatccaaaaatcctaaggtattacctcacctgagaacctaaatctttggcaaaat 62  Q
    ||||||||| |||||||||||||||||| ||||||| ||||||||||| || |||||||    
T  50099975 tgcggatcctaaaatcctaaggtattacttcacctgggaacctaaatccttagcaaaat 50099917  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 2521911 - 2521959
Alignment:
Q  3 ctgcggatccaaaaatcctaaggtattacctcacctgagaacctaaatc 51  Q
    |||||||||| ||||||||||| |||||||||||||| |||||||||||    
T  2521911 ctgcggatcctaaaatcctaagatattacctcacctgggaacctaaatc 2521959  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 8901934 - 8901879
Alignment:
Q  7 ggatccaaaaatcctaaggtattacctcacctgagaacctaaatctttggcaaaatc 63  Q
    |||||| |||||||||||||||||||||| |||  || ||||||| |||||||||||    
T  8901934 ggatcctaaaatcctaaggtattacctca-ctggaaatctaaatccttggcaaaatc 8901879  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 2836180 - 2836240
Alignment:
Q  3 ctgcggatccaaaaatcctaaggtattacctcacctgagaacctaaatctttggcaaaatc 63  Q
    |||||||||| ||||||||| |||||||||||||||| ||||||||||| ||| |||||||    
T  2836180 ctgcggatcctaaaatcctatggtattacctcacctgggaacctaaatccttgacaaaatc 2836240  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 34188918 - 34188858
Alignment:
Q  3 ctgcggatccaaaaatcctaaggtattacctcacctgagaacctaaatctttggcaaaatc 63  Q
    |||||||||| |||||||||||||||||| ||||||||||| ||||||| |||| ||||||    
T  34188918 ctgcggatcctaaaatcctaaggtattacttcacctgagaatctaaatcattggtaaaatc 34188858  T

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Target: scaffold0021 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 112197 - 112244
Alignment:
Q  3 ctgcggatccaaaaatcctaaggtattacctcacctgagaacctaaat 50  Q
    |||||||||| ||||||||| |||||||||||| ||| ||||||||||    
T  112197 ctgcggatcctaaaatcctatggtattacctcatctgggaacctaaat 112244  T

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