View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5052_low_1 (Length: 591)

Name: NF5052_low_1
Description: NF5052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5052_low_1
NF5052_low_1
[»] chr3 (10 HSPs)
chr3 (12-226)||(1602208-1602422)
chr3 (411-575)||(1602607-1602771)
chr3 (10-124)||(1622660-1622774)
chr3 (35-226)||(1618475-1618656)
chr3 (286-366)||(1602482-1602562)
chr3 (416-463)||(33147504-33147552)
chr3 (416-462)||(28422692-28422739)
chr3 (150-214)||(14585858-14585922)
chr3 (176-208)||(20252057-20252089)
chr3 (150-214)||(31462424-31462488)
[»] chr6 (5 HSPs)
chr6 (418-575)||(17280062-17280229)
chr6 (286-322)||(17280688-17280724)
chr6 (135-214)||(12481040-12481119)
chr6 (418-463)||(17280543-17280589)
chr6 (150-214)||(23637783-23637847)
[»] chr7 (1 HSPs)
chr7 (165-225)||(29545028-29545088)
[»] chr4 (3 HSPs)
chr4 (416-463)||(6311632-6311680)
chr4 (179-219)||(31932672-31932712)
chr4 (150-214)||(42197949-42198013)
[»] chr5 (3 HSPs)
chr5 (178-208)||(19121173-19121203)
chr5 (150-214)||(11734506-11734570)
chr5 (150-214)||(17095902-17095966)
[»] chr8 (1 HSPs)
chr8 (178-214)||(8868072-8868108)
[»] chr2 (2 HSPs)
chr2 (150-214)||(29543189-29543253)
chr2 (178-214)||(35220589-35220625)
[»] chr1 (1 HSPs)
chr1 (178-214)||(39987678-39987714)


Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 12 - 226
Target Start/End: Original strand, 1602208 - 1602422
Alignment:
Q  12 agagagagatatgttcaggcagaatatttgagtccctttaatgtcatcatattaggctttgccacatttctaggtattttgacgtcgtgtgatattaagc 111  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1602208 agagagagatatgttgaggcagaatatttgagtccctttaatgtcatcatattaggctttgccacatttctaggtattttgacgtcgtgtgatattaagc 1602307  T
Q  112 tggatgttgtgaattctacgcaaattcatctcttatggttttagcaatttttaatttgttttcgattgatgtagtttatcaatttgaatgaatgaatgtc 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  || ||||||||||||||||||||||||    
T  1602308 tggatgttgtgaattctacgcaaattcatctcttatggttttagcaatttttaatttgttctcgattgatgctgtctatcaatttgaatgaatgaatgtc 1602407  T
Q  212 gttgttttagtcaac 226  Q
    |||||||||||||||    
T  1602408 gttgttttagtcaac 1602422  T

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Target: chr3; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 411 - 575
Target Start/End: Original strand, 1602607 - 1602771
Alignment:
Q  411 gacaggtccaccattctcgttcttccttctctttgctattcttcttctctcactattttactgagtttaagattcatccacaatctcttaaatttacata 510  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1602607 gacaggtccaccattctcgttcttccttctctttgctcttcttcttctctcactattttactgagtttaagattcatccacaatctcttaaatttacata 1602706  T
Q  511 gttgttacctgcatcaatttcttttcaccaaacataggtaatgactatgattcattatcacaaat 575  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1602707 gttgttacctgcatcaatttcttttcaccaaacataggtaatgactatgatttattatcacaaat 1602771  T

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Target: chr3; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 10 - 124
Target Start/End: Original strand, 1622660 - 1622774
Alignment:
Q  10 gcagagagagatatgttcaggcagaatatttgagtccctttaatgtcatcatattaggctttgccacatttctaggtattttgacgtcgtgtgatattaa 109  Q
    ||||||||||||||||| ||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  1622660 gcagagagagatatgttgaggaacaatatttaagtccctttaatgtcatcatattaggctttgccacatttctaggtattttgatgtcgtgtgatattaa 1622759  T
Q  110 gctggatgttgtgaa 124  Q
    |||||||||||||||    
T  1622760 gctggatgttgtgaa 1622774  T

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Target: chr3; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 35 - 226
Target Start/End: Complemental strand, 1618656 - 1618475
Alignment:
Q  35 atatttgagtccctttaatgtcatcatattaggctttgccacatttctaggtattttgacgtcgtgtgatattaagctggatgttgtgaattctacgcaa 134  Q
    ||||||||| | |||||||  ||||||||||||||||| || |||| |||||||||||||||          ||| ||||||||||||| || | |||||    
T  1618656 atatttgagacactttaataccatcatattaggctttgtcaaatttgtaggtattttgacgt----------taacctggatgttgtgagttgttcgcaa 1618567  T
Q  135 attcatctcttatggttttagcaatttttaatttgttttcgattgatgtagtttatcaatttgaatgaatgaatgtcgttgttttagtcaac 226  Q
    |||||||||||||||||||| ||||||||||||||||||| || || | ||| ||||||||||||||| |||||||||||||||||||||||    
T  1618566 attcatctcttatggttttaacaatttttaatttgttttcaatcgacgcagtctatcaatttgaatgagtgaatgtcgttgttttagtcaac 1618475  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 286 - 366
Target Start/End: Original strand, 1602482 - 1602562
Alignment:
Q  286 gcaaccaacaccttttcactttgacacaaatgcccatgnnnnnnnnnnnngagaaaactaataccaatgggtacaaatgta 366  Q
    ||||||||||||||||||||||||||||||||||||||            ||||||||||||||||| |||||||||||||    
T  1602482 gcaaccaacaccttttcactttgacacaaatgcccatgtttttgttttttgagaaaactaataccaaagggtacaaatgta 1602562  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 463
Target Start/End: Original strand, 33147504 - 33147552
Alignment:
Q  416 gtccaccattctcgttcttccttctcttt-gctattcttcttctctcac 463  Q
    ||||||| ||||| ||||||||||||||| |||||||||||||||||||    
T  33147504 gtccacctttctctttcttccttctcttttgctattcttcttctctcac 33147552  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 462
Target Start/End: Complemental strand, 28422739 - 28422692
Alignment:
Q  416 gtccaccattctcgttcttccttctcttt-gctattcttcttctctca 462  Q
    ||||||||||||| |||||| |||||||| ||||||||||||||||||    
T  28422739 gtccaccattctctttcttctttctcttttgctattcttcttctctca 28422692  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 14585858 - 14585922
Alignment:
Q  150 ttttagcaatttttaatttgttttcgattgatgtagtttatcaatttgaatgaatgaatgtcgtt 214  Q
    ||||||| | ||| ||||||| ||  ||||||||| | ||||||||||||||||||||| |||||    
T  14585858 ttttagcgaatttgaatttgtattgtattgatgtactctatcaatttgaatgaatgaatatcgtt 14585922  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 20252057 - 20252089
Alignment:
Q  176 attgatgtagtttatcaatttgaatgaatgaat 208  Q
    ||||||||| |||||||||||||||||||||||    
T  20252057 attgatgtactttatcaatttgaatgaatgaat 20252089  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 31462488 - 31462424
Alignment:
Q  150 ttttagcaatttttaatttgttttcgattgatgtagtttatcaatttgaatgaatgaatgtcgtt 214  Q
    ||||||| | ||| ||||||| ||  || |||||| ||||||||||||||||||||||| |||||    
T  31462488 ttttagcgaatttaaatttgtattgtatcgatgtactttatcaatttgaatgaatgaatatcgtt 31462424  T

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Target: chr6 (Bit Score: 85; Significance: 3e-40; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 418 - 575
Target Start/End: Original strand, 17280062 - 17280229
Alignment:
Q  418 ccaccattctcgttctt-ccttctcttt-gctattcttcttctctcactattttac-tgagtttaagattcatc--ca-----caatctcttaaatttac 507  Q
    ||||||||||| ||||| |||||||||| ||||||||||||||||||| ||||||| |||||||| ||||||||  ||     ||||||||| |||||||    
T  17280062 ccaccattctctttctttccttctcttttgctattcttcttctctcaccattttacctgagtttacgattcatctgcagactgcaatctcttgaatttac 17280161  T
Q  508 atagttgttacctgcatcaatttcttttcaccaaacataggtaatgactatgattcattatcacaaat 575  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  17280162 atagttgttatctggatcaatttcttttcaccaaacataggtaatgattatgattcattatcacaaat 17280229  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 322
Target Start/End: Complemental strand, 17280724 - 17280688
Alignment:
Q  286 gcaaccaacaccttttcactttgacacaaatgcccat 322  Q
    ||||||||||||||||||||| |||||||||||||||    
T  17280724 gcaaccaacaccttttcacttggacacaaatgcccat 17280688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 214
Target Start/End: Complemental strand, 12481119 - 12481040
Alignment:
Q  135 attcatctcttatggttttagcaatttttaatttgttttcgattgatgtagtttatcaatttgaatgaatgaatgtcgtt 214  Q
    |||||||| || || ||||||||| |||  |||||| ||  || |||||| ||||||||||||||||||||||| |||||    
T  12481119 attcatcttttttgtttttagcaaatttggatttgtattgtatcgatgtactttatcaatttgaatgaatgaatatcgtt 12481040  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 418 - 463
Target Start/End: Complemental strand, 17280589 - 17280543
Alignment:
Q  418 ccaccattctcgttcttccttctc-tttgctattcttcttctctcac 463  Q
    ||||||||||| |||||||||||| |||| |||||||||||||||||    
T  17280589 ccaccattctctttcttccttctcttttgttattcttcttctctcac 17280543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 23637847 - 23637783
Alignment:
Q  150 ttttagcaatttttaatttgttttcgattgatgtagtttatcaatttgaatgaatgaatgtcgtt 214  Q
    |||||||||  || ||||||| ||  || |||||| ||||| |||||||||||||||||||||||    
T  23637847 ttttagcaaaattgaatttgtattgtatcgatgtactttattaatttgaatgaatgaatgtcgtt 23637783  T

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Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 29545028 - 29545088
Alignment:
Q  165 atttgttttcgattgatgtagtttatcaatttgaatgaatgaatgtcgttgttttagtcaa 225  Q
    ||||||| || |||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  29545028 atttgttctcaattgatgtagtttaccaatttgaatgaatgaatgtcgttgtgttagtcaa 29545088  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 463
Target Start/End: Complemental strand, 6311680 - 6311632
Alignment:
Q  416 gtccaccattctcgttcttccttctcttt-gctattcttcttctctcac 463  Q
    ||||||| ||||| ||||||||||||||| |||||||||||||||||||    
T  6311680 gtccacctttctctttcttccttctcttttgctattcttcttctctcac 6311632  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 31932672 - 31932712
Alignment:
Q  179 gatgtagtttatcaatttgaatgaatgaatgtcgttgtttt 219  Q
    |||||| ||||||||||||||||||||||| ||||| ||||    
T  31932672 gatgtactttatcaatttgaatgaatgaatatcgttttttt 31932712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 42197949 - 42198013
Alignment:
Q  150 ttttagcaatttttaatttgttttcgattgatgtagtttatcaatttgaatgaatgaatgtcgtt 214  Q
    ||||||||| ||| ||||||| ||  || |||||| | ||||||||||||||||||||| |||||    
T  42197949 ttttagcaaatttgaatttgtattgtatcgatgtactctatcaatttgaatgaatgaatatcgtt 42198013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 178 - 208
Target Start/End: Original strand, 19121173 - 19121203
Alignment:
Q  178 tgatgtagtttatcaatttgaatgaatgaat 208  Q
    |||||||||||||||||||||||||||||||    
T  19121173 tgatgtagtttatcaatttgaatgaatgaat 19121203  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 11734570 - 11734506
Alignment:
Q  150 ttttagcaatttttaatttgttttcgattgatgtagtttatcaatttgaatgaatgaatgtcgtt 214  Q
    ||||||| | ||| ||||||| ||  || |||||| ||||||||||||||||||||||| |||||    
T  11734570 ttttagcgaatttgaatttgtattgtatcgatgtactttatcaatttgaatgaatgaatatcgtt 11734506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 17095966 - 17095902
Alignment:
Q  150 ttttagcaatttttaatttgttttcgattgatgtagtttatcaatttgaatgaatgaatgtcgtt 214  Q
    ||||||| | ||| ||||||| ||  || |||||| | |||||||||||||||||||||||||||    
T  17095966 ttttagcgaatttgaatttgtattgtatcgatgtactctatcaatttgaatgaatgaatgtcgtt 17095902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 8868072 - 8868108
Alignment:
Q  178 tgatgtagtttatcaatttgaatgaatgaatgtcgtt 214  Q
    ||||||| | |||||||||||||||||||||||||||    
T  8868072 tgatgtattctatcaatttgaatgaatgaatgtcgtt 8868108  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 29543189 - 29543253
Alignment:
Q  150 ttttagcaatttttaatttgttttcgattgatgtagtttatcaatttgaatgaatgaatgtcgtt 214  Q
    ||||||||| ||| ||||||| ||  || |||||| | ||||||||||||||||||||| |||||    
T  29543189 ttttagcaaatttgaatttgtattgtatcgatgtactctatcaatttgaatgaatgaatatcgtt 29543253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 35220589 - 35220625
Alignment:
Q  178 tgatgtagtttatcaatttgaatgaatgaatgtcgtt 214  Q
    ||||||| | |||||||||||||||||||||||||||    
T  35220589 tgatgtactctatcaatttgaatgaatgaatgtcgtt 35220625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 39987678 - 39987714
Alignment:
Q  178 tgatgtagtttatcaatttgaatgaatgaatgtcgtt 214  Q
    ||||||| ||||||||||||||||||||||| |||||    
T  39987678 tgatgtaatttatcaatttgaatgaatgaatatcgtt 39987714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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