View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5052_low_10 (Length: 249)
Name: NF5052_low_10
Description: NF5052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5052_low_10 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 108; Significance: 2e-54; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 120 - 249
Target Start/End: Original strand, 5438676 - 5438802
Alignment:
| Q |
120 |
tttttagcttttggggatttagaaaaattacctccaacaccagccaaaagcacaggaaaaacgaacttgtagcgcttaataaagggttccttaggtagcg |
219 |
Q |
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| T |
5438676 |
tttttagcttttggggatttagaaaaattacctccaacaccagccaaaagcacaggaaaaaagaacttgtagtgcttaataaagggttccttaggtagcg |
5438775 |
T |
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| Q |
220 |
gcggcggaggaggaggagccgtttgtgccc |
249 |
Q |
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| T |
5438776 |
gcggc---ggaggaggagccgtttgtgccc |
5438802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 5438561 - 5438640
Alignment:
| Q |
5 |
taaattattctccaacatgaactatctagtacagcaacaagtcaaataaatcaaaccccatttcacaaactcaccaatca |
84 |
Q |
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| T |
5438561 |
taaattattctccaacatgaactatctagtacagcaacaagtcaaagaaatcaaaccccatttcacaaactcaccaatca |
5438640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 120 - 244
Target Start/End: Original strand, 5432177 - 5432310
Alignment:
| Q |
120 |
tttttagcttttggggatttagaaaaattacctccaacacca---------gccaaaagcacaggaaaaacgaacttgtagcgcttaataaagggttcct |
210 |
Q |
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| T |
5432177 |
tttttagctttttgggttgtagaaaaattacctccaataccaaaattgacagccaatagcataggccaaacgaacttgtagcgcttaatgaagggttcct |
5432276 |
T |
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| Q |
211 |
taggtagcggcggcggaggaggaggagccgtttg |
244 |
Q |
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| T |
5432277 |
taggcagcggcggaggtggaggaggagccgtttg |
5432310 |
T |
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