View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5052_low_12 (Length: 248)
Name: NF5052_low_12
Description: NF5052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5052_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 13283425 - 13283188
Alignment:
| Q |
1 |
tgaaaagggggttcacattattgatttccatttttcccatatcaaactataaatctgaaaattacaggaattcatgaaaagaaagatgtattgaaccaaa |
100 |
Q |
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|||||||| |||||||||||||||| |||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
13283425 |
tgaaaaggtggttcacattattgatctccatttttctcatatgaaacaataaatctgaaaattacaggaattcatgaaaagaaagatgtattgcaccaaa |
13283326 |
T |
|
| Q |
101 |
tgagctttcatttgacaattgaagcagggaaattgcattttcctttacagattaatccaaagttagcaaactcaaagatgtcaatttcgaaaacttgtct |
200 |
Q |
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| T |
13283325 |
taagctatcatttgacaactgaagcagggaacttgcattttcctttgcagattaatccaaagttagcaaactcaaagatgtcaatttcgaaaactcgttt |
13283226 |
T |
|
| Q |
201 |
gtgaagacagaagatgctgttgtaattacatctgttct |
238 |
Q |
| |
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| T |
13283225 |
gtgaagacagaagatgctgctgtaattacttctgttct |
13283188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 6241562 - 6241793
Alignment:
| Q |
1 |
tgaaaagggggttcacattattgatttccatttttcccatatcaaactataaatctgaaaattacaggaattcatgaaaagaaagatgtattgaaccaaa |
100 |
Q |
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|||||||| |||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
6241562 |
tgaaaaggtggttcacattattgatctccatttttcccatatgaaactataaatctgaaaaatacaggaattcatgaaaagaaagatgtattggaccaaa |
6241661 |
T |
|
| Q |
101 |
tgagctttcatttgacaattgaagcagggaaattgcattttcctttacagattaatccaa----agttagcaaactcaaagatgtcaatttcgaaaactt |
196 |
Q |
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| T |
6241662 |
tgagctatcatttgacaactaaagcagggaaattgcattttcctttacagattaatccaaccaaagtt-gcaaactcaaagatgtcaatttcgaaaactt |
6241760 |
T |
|
| Q |
197 |
gtctgtgaagacagaagatgctgttgtaattac |
229 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
6241761 |
gtctgtgaagacagaagatgctgttgtaattac |
6241793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 6138671 - 6138910
Alignment:
| Q |
1 |
tgaaaagggggttcacattattgatttccatttttcccatatcaaactataaatctgaaaattacaggaattcatgaaaagaaagatgtat--tgaacca |
98 |
Q |
| |
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|||||||| |||||||||||||||| |||||||||| ||||| |||| | |||||||||||||||||||||||||||||| |||||||||| || |||| |
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| T |
6138671 |
tgaaaaggtggttcacattattgatctccatttttctcatatgaaacaaaaaatctgaaaattacaggaattcatgaaaataaagatgtatattgcacca |
6138770 |
T |
|
| Q |
99 |
aatgagctttcatttgacaattgaagcagggaaattgcattttcctttacagattaatccaaagttagcaaactcaaagatgtcaatttcgaaaacttgt |
198 |
Q |
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| T |
6138771 |
aataagctatcatttgacaactgaggcagggaacttgcattttcctttgcagattaatcctaagttagcaaactcaaagatgtcaatttcgaaaactcgt |
6138870 |
T |
|
| Q |
199 |
ctgtgaagacagaagatgctgttgtaattacatctgttct |
238 |
Q |
| |
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| T |
6138871 |
atgtgaagacagaagatgctgctgtaattacttctgttct |
6138910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 57 - 238
Target Start/End: Original strand, 6233832 - 6234016
Alignment:
| Q |
57 |
gaaaattacaggaattcatgaaaagaaagatgtattgaaccaaatgagctttcatttgacaattgaagcagggaaattgcattttcctttacagattaat |
156 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
6233832 |
gaaaattacaggaattcatgaaaagaaagatgtattggaccaaatgagctatcatttgacaactaaagcagggaaattgcattttcctttacagattaat |
6233931 |
T |
|
| Q |
157 |
ccaa----agttagcaaactcaaagatgtcaatttcgaaaacttgtctgtgaagacagaagatgctgttgtaattacatctgttct |
238 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||| |||||||| |
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| T |
6233932 |
ccaaccgaagtt-gcaaactcaaagatgtcaatttcgaaaacttgtctgtggaaacagaatatgctgttgtaattacttctgttct |
6234016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 54 - 238
Target Start/End: Complemental strand, 6859615 - 6859430
Alignment:
| Q |
54 |
tctgaaaattacaggaattcatgaaaagaaagatgtattgaaccaaatgagctttcatttgacaattgaagcagggaaattgcattttcctttacagatt |
153 |
Q |
| |
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||||||||||||||||||| ||||||||||||| | |||| | |||||||||||||||||||||| |||||||||| ||| |||||||||||||| | |
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| T |
6859615 |
tctgaaaattacaggaattaatgaaaagaaagaggcattggagcaaatgagctttcatttgacaaccgaagcagggattttggattttcctttacagttc |
6859516 |
T |
|
| Q |
154 |
aatccaa-agttagcaaactcaaagatgtcaatttcgaaaacttgtctgtgaagacagaagatgctgttgtaattacatctgttct |
238 |
Q |
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||||||| | |||||||||| |||||||| |||| ||||||||| |||| ||||||| ||||||||||| |||| | |||||||| |
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| T |
6859515 |
aatccaataattagcaaacttgaagatgtcgattttgaaaacttgcctgtcaagacaggagatgctgttgcaatttcttctgttct |
6859430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 54 - 238
Target Start/End: Complemental strand, 8573071 - 8572886
Alignment:
| Q |
54 |
tctgaaaattacaggaattcatgaaaagaaagatgtattgaaccaaatgagctttcatttgacaattgaagcagggaaattgcattttcctttacagatt |
153 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||| | |||||||||||||| ||||||| ||||||||| | ||| ||||||||||| | | |
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| T |
8573071 |
tctgaaaattacaggaattcatgaaaagaaagaggtattggagcaaatgagctttcacttgacaactgaagcaggaattttggattttcctttagggttc |
8572972 |
T |
|
| Q |
154 |
aatccaa-agttagcaaactcaaagatgtcaatttcgaaaacttgtctgtgaagacagaagatgctgttgtaattacatctgttct |
238 |
Q |
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|||| || | ||||||||| |||||||| |||||||||||||| |||| |||| || ||||||||||| |||||| |||||||| |
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| T |
8572971 |
aatcgaataattagcaaacctgaagatgtcgatttcgaaaacttgcctgtcaagataggagatgctgttgcaattacttctgttct |
8572886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 112 - 238
Target Start/End: Original strand, 6254910 - 6255031
Alignment:
| Q |
112 |
ttgacaattgaagcagggaaattgcattttcctttacagattaatccaaagttagcaaactcaaagatgtcaatttcgaaaacttgtctgtgaagacaga |
211 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
6254910 |
ttgacaactgaagcagggaaattgcatttt-----acagattaatccaaagttagcaaactcaaagatgtcaaattcaaaaacttgtctgtgaagacaga |
6255004 |
T |
|
| Q |
212 |
agatgctgttgtaattacatctgttct |
238 |
Q |
| |
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| ||| ||||||||||| | |||||| |
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| T |
6255005 |
atatggggttgtaattacttttgttct |
6255031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 137 - 200
Target Start/End: Original strand, 6164126 - 6164189
Alignment:
| Q |
137 |
attttcctttacagattaatccaaagttagcaaactcaaagatgtcaatttcgaaaacttgtct |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
6164126 |
attttcctttacagtttaatccaaagttagcaaactcaaagatgtcgatttctaaaacttgtct |
6164189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 53 - 128
Target Start/End: Original strand, 7746735 - 7746810
Alignment:
| Q |
53 |
atctgaaaattacaggaattcatgaaaagaaagatgtattgaaccaaatgagctttcatttgacaattgaagcagg |
128 |
Q |
| |
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|||||||||||||||| ||||||||||||||||| |||||| | |||||||||||||||| |||| |||||||| |
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| T |
7746735 |
atctgaaaattacaggcattcatgaaaagaaagaggtattggagtaaatgagctttcatttcacaaccgaagcagg |
7746810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 4032471 - 4032520
Alignment:
| Q |
189 |
gaaaacttgtctgtgaagacagaagatgctgttgtaattacatctgttct |
238 |
Q |
| |
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||||||||||||||||||||||||||||||| ||| ||||| |||||||| |
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| T |
4032471 |
gaaaacttgtctgtgaagacagaagatgctgctgttattacttctgttct |
4032520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 112
Target Start/End: Original strand, 6914214 - 6914270
Alignment:
| Q |
56 |
tgaaaattacaggaattcatgaaaagaaagatgtattgaaccaaatgagctttcatt |
112 |
Q |
| |
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|||||||||||| ||||||| |||||||||| ||| || |||| |||||| |||||| |
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| T |
6914214 |
tgaaaattacagaaattcattaaaagaaagaggtactggaccagatgagccttcatt |
6914270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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