View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5052_low_14 (Length: 237)
Name: NF5052_low_14
Description: NF5052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5052_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 2 - 209
Target Start/End: Complemental strand, 6233576 - 6233368
Alignment:
| Q |
2 |
aacataattaatatgtaattttcttttagaagttgaatgatgacatttattgagagaaagatagtagagaaaatgaggttcagtgatagccaagtaacac |
101 |
Q |
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| T |
6233576 |
aacataattaatatgtaattttctgttagaagttgaatgatgacatttattgagagaaagatagtagagaaaatgaggttcagtgatagccaagtaacac |
6233477 |
T |
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| Q |
102 |
tattctgtctttcttttcaggcatttggaaaataaa-tttttgaccaaagtttgatagacaaagtctctctttcgttaatgaggttttgtttggaagaat |
200 |
Q |
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| T |
6233476 |
tattctgtctttcttttcaggcacttagaaaacaaattttttgatcaaagtttgatattcaaagtctctctttcgttaatgaggttttgtttggaagaat |
6233377 |
T |
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| Q |
201 |
aattaagtg |
209 |
Q |
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||||||||| |
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| T |
6233376 |
aattaagtg |
6233368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 6241444 - 6241237
Alignment:
| Q |
1 |
caacataattaatatgtaattttcttttagaagttgaatgatgacatttattgagagaaagatagtagagaaaatgaggttcagtgatagccaagtaaca |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6241444 |
caacataattaatatgtaattttctgttagaagttgaatgatgacatttattgagagaaagatagtagagaaaatgaggttcagtgatagccaagtaaca |
6241345 |
T |
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| Q |
101 |
ctattctgtctttcttttcaggcatttggaaaataaatttttgaccaaagtttgatagacaaagtctctctttcgttaatgaggttttgtttggaagaat |
200 |
Q |
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||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||| ||| |
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| T |
6241344 |
ctattctgtctttcttttcaggcatttagaaaacatatttttgaccaaagtttgatatacaaagtctctctttc-ataatcaggttttgtttggaaaaat |
6241246 |
T |
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| Q |
201 |
aattaagtg |
209 |
Q |
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| T |
6241245 |
aactaagtg |
6241237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 13283544 - 13283602
Alignment:
| Q |
1 |
caacataattaatatgtaattttcttttagaagttgaatgatgacatttattgagagaa |
59 |
Q |
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||||||| ||||||||||||||| | ||||||||||||||||||||||||| ||||||| |
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| T |
13283544 |
caacatatttaatatgtaattttatgttagaagttgaatgatgacatttatggagagaa |
13283602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 50
Target Start/End: Complemental strand, 6914018 - 6913980
Alignment:
| Q |
12 |
atatgtaattttcttttagaagttgaatgatgacattta |
50 |
Q |
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| T |
6914018 |
atatgtaattttctgttagaatttgaatgatgacattta |
6913980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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