View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5052_low_15 (Length: 236)

Name: NF5052_low_15
Description: NF5052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5052_low_15
NF5052_low_15
[»] chr6 (3 HSPs)
chr6 (18-236)||(663751-663974)
chr6 (153-236)||(908100-908183)
chr6 (155-199)||(10157995-10158039)
[»] chr7 (4 HSPs)
chr7 (48-111)||(44172881-44172944)
chr7 (44-118)||(36314611-36314685)
chr7 (28-94)||(38134414-38134480)
chr7 (154-202)||(36314628-36314676)
[»] chr2 (1 HSPs)
chr2 (154-205)||(44605137-44605188)
[»] chr5 (2 HSPs)
chr5 (32-105)||(16315862-16315935)
chr5 (57-105)||(19625928-19625976)
[»] chr3 (1 HSPs)
chr3 (43-111)||(8039206-8039274)
[»] chr4 (2 HSPs)
chr4 (43-105)||(18513238-18513300)
chr4 (35-84)||(5654609-5654658)
[»] chr8 (1 HSPs)
chr8 (29-94)||(6501481-6501546)
[»] chr1 (2 HSPs)
chr1 (34-111)||(43328458-43328535)
chr1 (157-205)||(40158408-40158456)


Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 663974 - 663751
Alignment:
Q  18 gatacaatatggacattgacatgttgacactgatgataatttgagaacatggcatatttcaatgtaaccacatgtgttagtgttgtgtt-----agtgtt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||    
T  663974 gatacaatatggacattgacatgttgacactgatgataatttgagaacatggcatatttcaatgtaaccacatgtgttagtgttgtgttgtgttagtgtt 663875  T
Q  113 agacacacctttgattagaagtgtcgattctaacaccatttataatttgagaaaaagacatatttcaatgaaattacatgtgtcggtgttagatacttac 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  663874 agacacacctttgattagaagtgtcgattctaacaccatttataatttgagaaaaagacatatttcaatgaaattacatgtgtcggtgttagatacttac 663775  T
Q  213 atgcattgtacacttggcacacct 236  Q
    ||||||||||||||||||||||||    
T  663774 atgcattgtacacttggcacacct 663751  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 153 - 236
Target Start/End: Original strand, 908100 - 908183
Alignment:
Q  153 tataatttgagaaaaagacatatttcaatgaaattacatgtgtcggtgttagatacttacatgcattgtacacttggcacacct 236  Q
    |||||||||||||| || |||||||||||| | |||||| ||||||||||||| ||||||||| || | |||||||||||||||    
T  908100 tataatttgagaaatagtcatatttcaatgtacttacatttgtcggtgttagacacttacatgtatcggacacttggcacacct 908183  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 10157995 - 10158039
Alignment:
Q  155 taatttgagaaaaagacatatttcaatgaaattacatgtgtcggt 199  Q
    ||||||||||||| |||||| ||||||| ||| ||||||||||||    
T  10157995 taatttgagaaaatgacataattcaatgtaatcacatgtgtcggt 10158039  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 111
Target Start/End: Complemental strand, 44172944 - 44172881
Alignment:
Q  48 tgatgataatttgagaacatggcatatttcaatgtaaccacatgtgttagtgttgtgttagtgt 111  Q
    |||| |||||||||||| ||| |||| |||||||||| |||||||||| |||||||||| ||||    
T  44172944 tgataataatttgagaaaatgacataattcaatgtaatcacatgtgtttgtgttgtgttggtgt 44172881  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 118
Target Start/End: Complemental strand, 36314685 - 36314611
Alignment:
Q  44 acactgatgataatttgagaacatggcatatttcaatgtaaccacatgtgttagtgttgtgttagtgttagacac 118  Q
    ||||| || |||||||||||| ||| ||||||||||||||| || ||||||| ||||||| || ||||| |||||    
T  36314685 acactcataataatttgagaaaatgacatatttcaatgtaatcatatgtgttggtgttgtcttggtgttggacac 36314611  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 94
Target Start/End: Complemental strand, 38134480 - 38134414
Alignment:
Q  28 ggacattgacatgttgacactgatgataatttgagaacatggcatatttcaatgtaaccacatgtgt 94  Q
    |||||| ||||||||||||| ||| |||||||||||| ||| |||| |||||||||| || ||||||    
T  38134480 ggacatggacatgttgacaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgt 38134414  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 36314676 - 36314628
Alignment:
Q  154 ataatttgagaaaaagacatatttcaatgaaattacatgtgtcggtgtt 202  Q
    |||||||||||||| |||||||||||||| ||| | |||||| ||||||    
T  36314676 ataatttgagaaaatgacatatttcaatgtaatcatatgtgttggtgtt 36314628  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 205
Target Start/End: Complemental strand, 44605188 - 44605137
Alignment:
Q  154 ataatttgagaaaaagacatatttcaatgaaattacatgtgtcggtgttaga 205  Q
    ||||||||||||||  ||||| ||||||| ||||||||||||||||||||||    
T  44605188 ataatttgagaaaataacataattcaatgtaattacatgtgtcggtgttaga 44605137  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 16315862 - 16315935
Alignment:
Q  32 attgacatgttgacactgatgataatttgagaacatggcatatttcaatgtaaccacatgtgttagtgttgtgt 105  Q
    |||||||||||||||||||| |||||||||| | |||  ||| || ||||||||||||||| |  |||||||||    
T  16315862 attgacatgttgacactgataataatttgaggaaatgatataattgaatgtaaccacatgtatctgtgttgtgt 16315935  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 105
Target Start/End: Complemental strand, 19625976 - 19625928
Alignment:
Q  57 tttgagaacatggcatatttcaatgtaaccacatgtgttagtgttgtgt 105  Q
    |||||||| |||| ||| || ||||||||||||||||| ||||||||||    
T  19625976 tttgagaaaatggaataattgaatgtaaccacatgtgtcagtgttgtgt 19625928  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 8039206 - 8039274
Alignment:
Q  43 gacactgatgataatttgagaacatggcatatttcaatgtaaccacatgtgttagtgttgtgttagtgt 111  Q
    |||||||||||||||||||||| |||||||  |||||||||| || | ||||  ||||||||| |||||    
T  8039206 gacactgatgataatttgagaaaatggcatgattcaatgtaatcataggtgtcggtgttgtgtcagtgt 8039274  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 105
Target Start/End: Complemental strand, 18513300 - 18513238
Alignment:
Q  43 gacactgatgataatttgagaacatggcatatttcaatgtaaccacatgtgttagtgttgtgt 105  Q
    ||||| ||| |||||||||||| ||| |||| |||||||||| || |||||| ||||||||||    
T  18513300 gacaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgttgtgt 18513238  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 5654658 - 5654609
Alignment:
Q  35 gacatgttgacactgatgataatttgagaacatggcatatttcaatgtaa 84  Q
    ||||||| ||||||||| |||||||||||| ||| |||| ||||||||||    
T  5654658 gacatgtcgacactgataataatttgagaaaatgacataattcaatgtaa 5654609  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 94
Target Start/End: Original strand, 6501481 - 6501546
Alignment:
Q  29 gacattgacatgttgacactgatgataatttgagaacatggcatatttcaatgtaaccacatgtgt 94  Q
    |||||||||| |||||||||| | |||||||||||  |||  ||| || |||||||||||||||||    
T  6501481 gacattgacacgttgacactggtaataatttgagagaatgaaataattaaatgtaaccacatgtgt 6501546  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 111
Target Start/End: Original strand, 43328458 - 43328535
Alignment:
Q  34 tgacatgttgacactgatgataatttgagaacatggcatatttcaatgtaaccacatgtgttagtgttgtgttagtgt 111  Q
    ||||| ||||||||| || |||||||||||| |||  ||| || ||||||||||||||||| | ||| ||||| ||||    
T  43328458 tgacacgttgacacttataataatttgagaaaatgaaataatttaatgtaaccacatgtgtcattgtcgtgttggtgt 43328535  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 205
Target Start/End: Complemental strand, 40158456 - 40158408
Alignment:
Q  157 atttgagaaaaagacatatttcaatgaaattacatgtgtcggtgttaga 205  Q
    ||||||||||| ||||||  | |||||||| ||||||||||||||||||    
T  40158456 atttgagaaaatgacataaatgaatgaaatcacatgtgtcggtgttaga 40158408  T

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