View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5052_low_3 (Length: 390)
Name: NF5052_low_3
Description: NF5052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5052_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 14 - 372
Target Start/End: Original strand, 52848879 - 52849237
Alignment:
| Q |
14 |
agaccatattgttaacatctcaactaaatctaacgattcatttgaatctgaaccccgttgcatgactgccatgtctcttcctcaggtagatggtaaatct |
113 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52848879 |
agaccatcttgttaacatctcaactaaatctaacgattcatttgaatctgaaccccgttgcatgactgccatgtctcttcctcaggtagatggtaaatct |
52848978 |
T |
|
| Q |
114 |
tctatagggaatggacatagtgatcaagatgctcctcagcgaaaagttgaggacattaaaaggtccagtgaccatcttgtgaacctctcagagaaatcta |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52848979 |
tctatagggaatggacatagtgatcaagatgctcctcagcgaaaagttgaggacattaaaaggtccagtgaccatcttgtgaacctctcagagaaatcta |
52849078 |
T |
|
| Q |
214 |
atgactcatttgaatccaaatcgcgttgtatggctgccatttctcctcctcgggtagataaggtggatcaggaaaattcatcgcattctcagttccttaa |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52849079 |
atgactcatttgaatccaaatcgcgttgtatggctgccatttctcctcctcgggtagataaggtggatcaggaaaattcatcgcattctcagttccttaa |
52849178 |
T |
|
| Q |
314 |
gttggagcagaatatgtcaccttcttcgtccaataagctagaccaggaacccacatcac |
372 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52849179 |
gttggagcagaatatgtcaccttcttcgtccaataagctagaccaggaacccacatcac |
52849237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 51 - 271
Target Start/End: Original strand, 52847407 - 52847627
Alignment:
| Q |
51 |
tcatttgaatctgaaccccgttgcatgactgccatgtctcttcctcaggtagatggtaaatcttctatagggaatggacatagtgatcaagatgctcctc |
150 |
Q |
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| T |
52847407 |
tcatttgaatctgaaacttgttgtatggctaccatatctcttcctcaggtagaatgtaaatcatctatatggaatgggcatagtgatcaagatgctcctc |
52847506 |
T |
|
| Q |
151 |
agcgaaaagttgaggacattaaaaggtccagtgaccatcttgtgaacctctcagagaaatctaatgactcatttgaatccaaatcgcgttgtatggctgc |
250 |
Q |
| |
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|| |||| |||||||||||||||| ||| |||||||| |||| |||||||||| ||||||||||||||||| || || ||||||||||| | |
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| T |
52847507 |
aggaaaaaattgaggacattaaaagaaccaacatccatcttgcaaaccatacagagaaatccaatgactcatttgaatcggaaacgtgttgtatggctcc |
52847606 |
T |
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| Q |
251 |
catttctcctcctcgggtaga |
271 |
Q |
| |
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||| |||||||||| |||||| |
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| T |
52847607 |
catgtctcctcctcaggtaga |
52847627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 85 - 263
Target Start/End: Original strand, 52848614 - 52848792
Alignment:
| Q |
85 |
tgtctcttcctcaggtagatggtaaatcttctatagggaatggacatagtgatcaagatgctcctcagcgaaaagttgaggacattaaaaggtccagtga |
184 |
Q |
| |
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|||||| || |||||||||| ||||||| |||| |||||||||||||||||||||| ||| |||||| | |||| ||||||||||||||||| | | || |
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| T |
52848614 |
tgtctcctcgtcaggtagattgtaaatcatctacagggaatggacatagtgatcaatatgttcctcaacaaaaaattgaggacattaaaaggacgaacga |
52848713 |
T |
|
| Q |
185 |
ccatcttgtgaacctctcagagaaatctaatgactcatttgaatccaaatcgcgttgtatggctgccatttctcctcct |
263 |
Q |
| |
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||||||||||||||| ||||||||||||| ||||||||||||||| || | |||| ||||||||||| |||| |||| |
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| T |
52848714 |
ccatcttgtgaacctatcagagaaatctattgactcatttgaatcggaaccctgttgcatggctgccatatctcttcct |
52848792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 39 - 229
Target Start/End: Original strand, 52847731 - 52847921
Alignment:
| Q |
39 |
aaatctaacgattcatttgaatctgaaccccgttgcatgactgccatgtctcttcctcaggtagatggtaaatcttctatagggaatggacatagtgatc |
138 |
Q |
| |
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||||||| ||||||||||||||| |||| |||||||| ||| |||||||| ||||||||||| ||||||| |||||| ||||||| |||||||||| |
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| T |
52847731 |
aaatctattgattcatttgaatctaaaccatgttgcatggatgcaatgtctctccctcaggtagaatgtaaatcatctatatggaatgggcatagtgatc |
52847830 |
T |
|
| Q |
139 |
aagatgctcctcagcgaaaagttgaggacattaaaaggtccagtgaccatcttgtgaacctctcagagaaatctaatgactcatttgaatc |
229 |
Q |
| |
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|| ||||||||||| |||| |||||||| |||||| ||| ||||||||||| || | |||||||||||||||||||||| |||||| |
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| T |
52847831 |
aatatgctcctcagaaaaaaattgaggacgttaaaattaccaaccaccatcttgtgtacgtatcagagaaatctaatgactcatatgaatc |
52847921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 51 - 272
Target Start/End: Original strand, 52848748 - 52848969
Alignment:
| Q |
51 |
tcatttgaatctgaaccccgttgcatgactgccatgtctcttcctcaggtagatggtaaatcttctatagggaatggacatagtgatcaagatgctcctc |
150 |
Q |
| |
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||||||||||| |||||| |||||||| ||||||| ||||||||| |||||||| || || | | |||||||||| |||||||||||||||||||||| |
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| T |
52848748 |
tcatttgaatcggaaccctgttgcatggctgccatatctcttccttttgtagatggcaagtcatttgtagggaatgggcatagtgatcaagatgctcctc |
52848847 |
T |
|
| Q |
151 |
agcgaaaagttgaggacattaaaaggtccagtgaccatcttgtgaacctctcagagaaatctaatgactcatttgaatccaaatcgcgttgtatggctgc |
250 |
Q |
| |
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| | |||| |||||| ||||||||| ||| ||||||||||| ||| ||||| |||||||| || ||||||||||| || | ||||| ||| |||| |
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| T |
52848848 |
aacaaaaaactgaggatattaaaaggaccaaagaccatcttgttaacatctcaactaaatctaacgattcatttgaatctgaaccccgttgcatgactgc |
52848947 |
T |
|
| Q |
251 |
catttctcctcctcgggtagat |
272 |
Q |
| |
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||| |||| ||||| ||||||| |
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| T |
52848948 |
catgtctcttcctcaggtagat |
52848969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 99 - 271
Target Start/End: Original strand, 52847287 - 52847459
Alignment:
| Q |
99 |
gtagatggtaaatcttctatagggaatggacatagtgatcaagatgctcctcagcgaaaagttgaggacattaaaaggtccagtgaccatcttgtgaacc |
198 |
Q |
| |
|
|||||||||||||| | || |||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||| |||||| ||| |||| |
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| T |
52847287 |
gtagatggtaaatcacccatggggagtggacatagtgatcaagatgctcctcagcaaaaaattgaggacattaaaaggaccaacaaccatcatgtaaacc |
52847386 |
T |
|
| Q |
199 |
tctcagagaaatctaatgactcatttgaatccaaatcgcgttgtatggctgccatttctcctcctcgggtaga |
271 |
Q |
| |
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| ||||||||| |||||||||||||||||| || | ||||||||||| |||| |||| ||||| |||||| |
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| T |
52847387 |
acacagagaaatttaatgactcatttgaatctgaaacttgttgtatggctaccatatctcttcctcaggtaga |
52847459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 51 - 229
Target Start/End: Original strand, 52847575 - 52847753
Alignment:
| Q |
51 |
tcatttgaatctgaaccccgttgcatgactgccatgtctcttcctcaggtagatggtaaatcttctatagggaatggacatagtgatcaagatgctcctc |
150 |
Q |
| |
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||||||||||| ||| | |||| ||| || ||||||||| |||||||||||| ||||||| |||| || |||||| ||||||| | ||||||||||| |
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| T |
52847575 |
tcatttgaatcggaaacgtgttgtatggctcccatgtctcctcctcaggtagaacgtaaatcatctacagagaatgggcatagtggtgaagatgctccta |
52847674 |
T |
|
| Q |
151 |
agcgaaaagttgaggacattaaaaggtccagtgaccatcttgtgaacctctcagagaaatctaatgactcatttgaatc |
229 |
Q |
| |
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||| |||| ||||||||||||||||| ||| | ||| ||||||||||| ||||||||||| ||| ||||||||||| |
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| T |
52847675 |
agcaaaaaattgaggacattaaaaggaccaacaatcatattgtgaacctcaaagagaaatctattgattcatttgaatc |
52847753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 39 - 186
Target Start/End: Original strand, 52847899 - 52848046
Alignment:
| Q |
39 |
aaatctaacgattcatttgaatctgaaccccgttgcatgactgccatgtctcttcctcaggtagatggtaaatcttctatagggaatggacatagtgatc |
138 |
Q |
| |
|
|||||||| || |||| |||||| ||| || ||||||||| ||| ||||| ||||| |||||| ||||||| |||| |||| ||| |||| ||||| |
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| T |
52847899 |
aaatctaatgactcatatgaatcagaatccttttgcatgacagccccgtctcatcctctggtagaatgtaaatcatctaaaggggatgagcataatgatc |
52847998 |
T |
|
| Q |
139 |
aagatgctcctcagcgaaaagttgaggacattaaaaggtccagtgacc |
186 |
Q |
| |
|
|||||| |||||| | |||| ||||||||||||||||| ||| ||||| |
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|
| T |
52847999 |
aagatgatcctcaactaaaaattgaggacattaaaaggaccaatgacc |
52848046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 130 - 218
Target Start/End: Original strand, 52848491 - 52848579
Alignment:
| Q |
130 |
atagtgatcaagatgctcctcagcgaaaagttgaggacattaaaaggtccagtgaccatcttgtgaacctctcagagaaatctaatgac |
218 |
Q |
| |
|
||||||||||| |||||||||| ||| |||||||||| ||||| ||| | |||||||||||||||| ||||||||||||||||| |
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|
| T |
52848491 |
atagtgatcaaaatgctcctcacaagaaaattgaggacatcgaaaggaccaacggccatcttgtgaacctcccagagaaatctaatgac |
52848579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 129 - 224
Target Start/End: Original strand, 52848322 - 52848417
Alignment:
| Q |
129 |
catagtgatcaagatgctcctcagcgaaaagttgaggacattaaaaggtccagtgaccatcttgtgaacctctcagagaaatctaatgactcattt |
224 |
Q |
| |
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|||||||||||| ||||||||| | |||| |||| |||||| ||| | ||| ||||||||||||||| || || | |||||||||||||||||| |
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| T |
52848322 |
catagtgatcaaaatgctcctcgtcaaaaaattgaagacattgaaatgaccaacgaccatcttgtgaacatcgcatataaatctaatgactcattt |
52848417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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