View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5052_low_4 (Length: 338)
Name: NF5052_low_4
Description: NF5052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5052_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 20 - 322
Target Start/End: Complemental strand, 41127332 - 41127030
Alignment:
| Q |
20 |
caaacggcatcatctttatctctttggtcccggtaatatcaaaagcctcatccttcaaaaacctttcaggtttaaactccaatggatcttcccaaacacg |
119 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
41127332 |
caaacggcatcatctttatctctttagtcccggtaatatcaaaagcctcatccttcaaaaacctttctggtttaaactccaatggatcttcccaaacact |
41127233 |
T |
|
| Q |
120 |
agggtccctccctatgtctgccaccatgaaattcactaccgcatttttaggcagcaagtaaccgttgaaaaccacatcctccttcaccgcatggggcaac |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
41127232 |
agggtccctccctatgtctgccaccatgaaattcactaccacatttttaggcagcaagtaaccgtcgaaaaccacatcctccttcaccgcatggggcaac |
41127133 |
T |
|
| Q |
220 |
acaaagtgccccggtgggtgacgcctcagcccttccaaaatcacacactttagatatggtaggttctgcaagtcttcctctttaatttccttattctctt |
319 |
Q |
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|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41127132 |
acaaagtgccccggtgggtgacacctcagcccttccaaaatcacacactttagatatggtaggttctgcaagtcttcctctttaatttccttattctctt |
41127033 |
T |
|
| Q |
320 |
cat |
322 |
Q |
| |
|
||| |
|
|
| T |
41127032 |
cat |
41127030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 103 - 200
Target Start/End: Complemental strand, 26506858 - 26506761
Alignment:
| Q |
103 |
ggatcttcccaaacacgagggtccctccctatgtctgccaccatgaaattcactaccgcatttttaggcagcaagtaaccgttgaaaaccacatcctc |
200 |
Q |
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||||| |||||||||| || |||| ||| | ||||||||||| ||||| ||| | |||||||||||| |||||||||||| |||| ||||||||| |
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| T |
26506858 |
ggatcctcccaaacacttggatcccacccaacctctgccaccataaaattaactgtcccatttttaggcaccaagtaaccgttaaaaatcacatcctc |
26506761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 206
Target Start/End: Complemental strand, 26494786 - 26494710
Alignment:
| Q |
130 |
cctatgtctgccaccatgaaattcactaccgcatttttaggcagcaagtaaccgttgaaaaccacatcctccttcac |
206 |
Q |
| |
|
||||| ||||||||||| |||||||| | |||||||||||| ||||||||| || ||||| | ||||||| |||| |
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|
| T |
26494786 |
cctatatctgccaccataaaattcacagtcccatttttaggcaccaagtaaccattcaaaacaatatcctccgtcac |
26494710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 127; Significance: 2e-65; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 20 - 302
Target Start/End: Complemental strand, 2327305 - 2327023
Alignment:
| Q |
20 |
caaacggcatcatctttatctctttggtcccggtaatatcaaaagcctcatccttcaaaaacctttcaggtttaaactccaatggatcttcccaaacacg |
119 |
Q |
| |
|
|||||||||||||||| |||||||| |||| ||||||||||||| ||||||||||||||||||||| || |||||||||| |||||| ||||||||||| |
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|
| T |
2327305 |
caaacggcatcatcttgatctctttactccctgtaatatcaaaagtctcatccttcaaaaacctttctggcttaaactccattggatcctcccaaacacg |
2327206 |
T |
|
| Q |
120 |
agggtccctccctatgtctgccaccatgaaattcactaccgcatttttaggcagcaagtaaccgttgaaaaccacatcctccttcaccgcatggggcaac |
219 |
Q |
| |
|
||| ||| ||| || |||||||||||||||||||| | |||||||||||| ||| ||||| || ||||||||||| || |||| ||||| |||||| |
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|
| T |
2327205 |
aggatccaaccccatctctgccaccatgaaattcaccgtcccatttttaggcaccaaataaccattcaaaaccacatcatcgctcactgcatgaggcaac |
2327106 |
T |
|
| Q |
220 |
acaaagtgccccggtgggtgacgcctcagcccttccaaaatcacacactttagatatggtaggttctgcaagtcttcctcttt |
302 |
Q |
| |
|
||||| ||||| ||||| |||||||||| ||||||||||| ||||||||| | ||| | || || ||||||||||||||||| |
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| T |
2327105 |
acaaaatgccctggtggatgacgcctcaacccttccaaaaccacacacttcaaataccgaagtttatgcaagtcttcctcttt |
2327023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 20 - 302
Target Start/End: Complemental strand, 2321452 - 2321169
Alignment:
| Q |
20 |
caaacggcatcatctttatctctttggtcccggtaatatcaaaagcctcatccttcaaaaacctttcaggtttaaactccaatggatcttcccaaacacg |
119 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||| || |||||||||| |||||| ||||||||||| |
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|
| T |
2321452 |
caaacggcatcatctttatctctttactccctataatatcaaaagtctcatccttcaaaaacctttctggcttaaactccattggatcctcccaaacacg |
2321353 |
T |
|
| Q |
120 |
agggtccctccctatgtctgccaccatgaaattcactaccgcatttttaggcagcaagtaaccgttgaaaaccacatcctccttcaccgcatggggcaac |
219 |
Q |
| |
|
||| |||| | | || || | || |||||||||||| | |||||||||||| ||| |||||||| |||||||||||||| ||||||| || | |||| |
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| T |
2321352 |
aggatcccacgccatctccgacagcatgaaattcaccgtcccatttttaggcaccaaataaccgttcaaaaccacatcctctttcaccgtgtgtgccaac |
2321253 |
T |
|
| Q |
220 |
acaaagtgcccc-ggtgggtgacgcctcagcccttccaaaatcacacactttagatatggtaggttctgcaagtcttcctcttt |
302 |
Q |
| |
|
||||| |||||| ||||| |||||||||| ||||||||||| ||| ||||| | |||| | || |||||||||| ||||||||| |
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|
| T |
2321252 |
acaaaatgcccctggtggatgacgcctcatcccttccaaaaccacgcacttcaaatatcgaagtttctgcaagttttcctcttt |
2321169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 20 - 302
Target Start/End: Complemental strand, 2303750 - 2303468
Alignment:
| Q |
20 |
caaacggcatcatctttatctctttggtcccggtaatatcaaaagcctcatccttcaaaaacctttcaggtttaaactccaatggatcttcccaaacacg |
119 |
Q |
| |
|
|||||||||||||||||||||| || |||| ||||| |||||| |||||||||| |||||||||| || |||||||||| |||||| ||||||||||| |
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| T |
2303750 |
caaacggcatcatctttatctccttactccctgtaatgtcaaaattctcatccttccaaaacctttctggcttaaactccattggatcctcccaaacacg |
2303651 |
T |
|
| Q |
120 |
agggtccctccctatgtctgccaccatgaaattcactaccgcatttttaggcagcaagtaaccgttgaaaaccacatcctccttcaccgcatggggcaac |
219 |
Q |
| |
|
||| |||| ||| || || |||| |||||||||||| | |||||||||||| ||| |||||||| |||||||||||||| |||||||| || |||||| |
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| T |
2303650 |
aggatcccaccccatctccgccagcatgaaattcaccgtcccatttttaggcaccaaataaccgttcaaaaccacatcctctttcaccgcgtgtggcaac |
2303551 |
T |
|
| Q |
220 |
acaaagtgccccggtgggtgacgcctcagcccttccaaaatcacacactttagatatggtaggttctgcaagtcttcctcttt |
302 |
Q |
| |
|
| ||| ||||||||||| |||||||||| ||||||||||| ||||| || | ||| | || |||||||| ||||||||||| |
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|
| T |
2303550 |
agaaaatgccccggtggatgacgcctcaacccttccaaaacaacacatttcaaataccgaagtttctgcaattcttcctcttt |
2303468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 20 - 302
Target Start/End: Complemental strand, 2294137 - 2293855
Alignment:
| Q |
20 |
caaacggcatcatctttatctctttggtcccggtaatatcaaaagcctcatccttcaaaaacctttcaggtttaaactccaatggatcttcccaaacacg |
119 |
Q |
| |
|
||||||||||||||||||||||||| | || ||||| ||||||| ||||||||||||||||||||| || ||||||||||| || || ||||||||||| |
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|
| T |
2294137 |
caaacggcatcatctttatctctttacttcctgtaatgtcaaaagtctcatccttcaaaaacctttctggcttaaactccaacgggtcctcccaaacacg |
2294038 |
T |
|
| Q |
120 |
agggtccctccctatgtctgccaccatgaaattcactaccgcatttttaggcagcaagtaaccgttgaaaaccacatcctccttcaccgcatggggcaac |
219 |
Q |
| |
|
||| ||| | | || || |||| || ||||||||| | | |||||||||| ||| ||||||| |||||||||||||| |||||||| || |||||| |
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|
| T |
2294037 |
aggatccaacgccatctccgccagcaagaaattcaccgtcccgtttttaggcaccaaataaccgtccaaaaccacatcctctttcaccgcgtgtggcaac |
2293938 |
T |
|
| Q |
220 |
acaaagtgccccggtgggtgacgcctcagcccttccaaaatcacacactttagatatggtaggttctgcaagtcttcctcttt |
302 |
Q |
| |
|
||| | ||||||||| |||||||||| ||||||||||| ||||||||| | ||| | || |||||||||||||||||||| |
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|
| T |
2293937 |
ggaaatttccccggtggatgacgcctcaacccttccaaaaccacacacttcaaataccgaagtttctgcaagtcttcctcttt |
2293855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 20 - 302
Target Start/End: Complemental strand, 2351326 - 2351044
Alignment:
| Q |
20 |
caaacggcatcatctttatctctttggtcccggtaatatcaaaagcctcatccttcaaaaacctttcaggtttaaactccaatggatcttcccaaacacg |
119 |
Q |
| |
|
|||| |||||||||||||||||||| |||| ||||| ||||| | ||||||||||||||||| || || |||||||||| |||||| ||||||||||| |
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|
| T |
2351326 |
caaatggcatcatctttatctctttactccccgtaatgtcaaatgtttcatccttcaaaaacctctctggcttaaactccattggatcctcccaaacacg |
2351227 |
T |
|
| Q |
120 |
agggtccctccctatgtctgccaccatgaaattcactaccgcatttttaggcagcaagtaaccgttgaaaaccacatcctccttcaccgcatggggcaac |
219 |
Q |
| |
|
||| |||| ||| || ||||||||||| ||||| || | |||||||||||| ||| |||||||| |||| ||||||||| ||||||| || |||||| |
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|
| T |
2351226 |
aggatcccaccccatctctgccaccataaaattgaccgtcccatttttaggcaccaaataaccgttaaaaagcacatcctctgtcaccgcgtgtggcaac |
2351127 |
T |
|
| Q |
220 |
acaaagtgccccggtgggtgacgcctcagcccttccaaaatcacacactttagatatggtaggttctgcaagtcttcctcttt |
302 |
Q |
| |
|
||| ||||||||||| |||||||||| ||||||||||| |||||| || ||||| || |||||||| ||||||||||| |
|
|
| T |
2351126 |
acattatgccccggtggatgacgcctcaacccttccaaaaccacacatttcagatacaaaagtttctgcaaatcttcctcttt |
2351044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 20 - 302
Target Start/End: Complemental strand, 2331020 - 2330738
Alignment:
| Q |
20 |
caaacggcatcatctttatctctttggtcccggtaatatcaaaagcctcatccttcaaaaacctttcaggtttaaactccaatggatcttcccaaacacg |
119 |
Q |
| |
|
|||| |||||||||||||||||||| | || ||||| ||||||| ||||||||||||||||||||| || ||||| |||| |||||| ||||||||||| |
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|
| T |
2331020 |
caaatggcatcatctttatctctttacttcctgtaatgtcaaaagtctcatccttcaaaaacctttctggcttaaattccattggatcctcccaaacacg |
2330921 |
T |
|
| Q |
120 |
agggtccctccctatgtctgccaccatgaaattcactaccgcatttttaggcagcaagtaaccgttgaaaaccacatcctccttcaccgcatggggcaac |
219 |
Q |
| |
|
||||||| ||| || ||||| ||||| |||||||| | ||| |||||||| ||| ||||| || |||||||||||||| |||| || || |||||| |
|
|
| T |
2330920 |
agggtccaaccccatctctgcaaccataaaattcaccgtcccatctttaggcaccaaataaccattcaaaaccacatcctcgctcactgcgtgaggcaac |
2330821 |
T |
|
| Q |
220 |
acaaagtgccccggtgggtgacgcctcagcccttccaaaatcacacactttagatatggtaggttctgcaagtcttcctcttt |
302 |
Q |
| |
|
|| || ||||| ||||| |||||||||| ||||||||||| ||| ||||| | ||| | || || ||||||||||||||||| |
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|
| T |
2330820 |
acgaaatgccctggtggatgacgcctcaacccttccaaaaccacgcacttcaaataccgaagtttatgcaagtcttcctcttt |
2330738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 20 - 302
Target Start/End: Complemental strand, 2310468 - 2310186
Alignment:
| Q |
20 |
caaacggcatcatctttatctctttggtcccggtaatatcaaaagcctcatccttcaaaaacctttcaggtttaaactccaatggatcttcccaaacacg |
119 |
Q |
| |
|
||||||||||||||||||||||||| | || | ||| |||||| ||||||||||||||||||||| || |||||||||||||| || ||||||||||| |
|
|
| T |
2310468 |
caaacggcatcatctttatctctttacttcctggaatgacaaaagtctcatccttcaaaaacctttctggcttaaactccaatgggtcctcccaaacacg |
2310369 |
T |
|
| Q |
120 |
agggtccctccctatgtctgccaccatgaaattcactaccgcatttttaggcagcaagtaaccgttgaaaaccacatcctccttcaccgcatggggcaac |
219 |
Q |
| |
|
| | ||| | | || || |||| | ||||||||| | | |||||||||| ||| ||||||| |||||||||||||| |||||||| || |||||| |
|
|
| T |
2310368 |
acgatccaacgccatctccgccagaaagaaattcaccgtcccgtttttaggcaccaaataaccgtccaaaaccacatcctctttcaccgcgtgtggcaac |
2310269 |
T |
|
| Q |
220 |
acaaagtgccccggtgggtgacgcctcagcccttccaaaatcacacactttagatatggtaggttctgcaagtcttcctcttt |
302 |
Q |
| |
|
||| | ||||| ||| |||||||||| ||||||||||| ||||||||| | ||| || |||||||||||||||||||| |
|
|
| T |
2310268 |
ggaaatttccccgatggatgacgcctcaacccttccaaaaccacacacttcaaataccaaagtttctgcaagtcttcctcttt |
2310186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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