View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5052_low_8 (Length: 267)
Name: NF5052_low_8
Description: NF5052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5052_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 3916146 - 3915909
Alignment:
| Q |
17 |
atgaacaaaaatagtaaagttaaaggtnnnnnnngtgaagcaaatattatctatcctacaaagctatgtagagaaaatacatttagagtcacgaaatcca |
116 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3916146 |
atgaacaaaaatagtaaagttaaaggtaaaaaaagtgaagcaaatattatctatcctacaaagctatgtagagaaaataaatttagagtcacgaaatcca |
3916047 |
T |
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| Q |
117 |
aacatcaagctttttggtcatccatatctataactatattcccgaactcttcggtcatcaatttcgatatgttggatatgagccaccttgcgccagtagt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
3916046 |
aacatcaagctttttggtcatccatatctataactatattcccgaactcttcggtcatcaatttcgatatgttggatatgagccaccttgcgccagtact |
3915947 |
T |
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| Q |
217 |
ttcctgtcttgg---gatcaagtcttggaataaaaaat |
251 |
Q |
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|||||||||||| ||||||||||||||||||||||| |
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| T |
3915946 |
ttcctgtcttgggccgatcaagtcttggaataaaaaat |
3915909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 124 - 242
Target Start/End: Original strand, 16035451 - 16035569
Alignment:
| Q |
124 |
agctttttggtcatccatatctataactatattcccgaactcttcggtcatcaatttcgatatgttggatatgagccaccttgcgccagtagtttcctgt |
223 |
Q |
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||||||||| |||| |||||||||| | ||||| |||||| ||| |||||||| ||||||| |||||||||||||||| ||||||| |||||||| |
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| T |
16035451 |
agctttttgctcattaatatctataagaaggttcccaaactctcttgtcttcaatttctatatgttagatatgagccaccttgtgccagtactttcctgt |
16035550 |
T |
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| Q |
224 |
cttgggatcaagtcttgga |
242 |
Q |
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|||||| |||||||||||| |
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| T |
16035551 |
cttgggttcaagtcttgga |
16035569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 174 - 242
Target Start/End: Original strand, 16061608 - 16061676
Alignment:
| Q |
174 |
tcaatttcgatatgttggatatgagccaccttgcgccagtagtttcctgtcttgggatcaagtcttgga |
242 |
Q |
| |
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|||||||| |||||||| ||||||||||||||| ||||||| |||||||||||||| |||||||||||| |
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| T |
16061608 |
tcaatttctatatgttgaatatgagccaccttgtgccagtactttcctgtcttgggttcaagtcttgga |
16061676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 174 - 242
Target Start/End: Original strand, 16046093 - 16046161
Alignment:
| Q |
174 |
tcaatttcgatatgttggatatgagccaccttgcgccagtagtttcctgtcttgggatcaagtcttgga |
242 |
Q |
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|||||||| ||||||| ||||||||||| |||| ||||||| |||||||||||||| |||||||||||| |
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| T |
16046093 |
tcaatttctatatgttagatatgagccatcttgtgccagtactttcctgtcttgggttcaagtcttgga |
16046161 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 170 - 242
Target Start/End: Original strand, 52651341 - 52651413
Alignment:
| Q |
170 |
gtcatcaatttcgatatgttggatatgagccaccttgcgccagtagtttcctgtcttgggatcaagtcttgga |
242 |
Q |
| |
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|||||||||||| ||||| | ||||||||||||||||||||||| |||||| ||||||| | |||||||||| |
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|
| T |
52651341 |
gtcatcaatttctatatgaggaatatgagccaccttgcgccagtactttcctttcttgggtttaagtcttgga |
52651413 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 124 - 242
Target Start/End: Original strand, 16052207 - 16052325
Alignment:
| Q |
124 |
agctttttggtcatccatatctataactatattcccgaactcttcggtcatcaatttcgatatgttggatatgagccaccttgcgccagtagtttcctgt |
223 |
Q |
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||||||||| |||| |||||||||| | ||||| |||||| ||| |||||||| ||||||||||||||| |||||||| ||||||| |||| | | |
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| T |
16052207 |
agctttttgctcattaatatctataagaaggttcccaaactctcttgtcttcaatttctatatgttggatatgatccaccttgtgccagtactttcgttt |
16052306 |
T |
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| Q |
224 |
cttgggatcaagtcttgga |
242 |
Q |
| |
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||| || |||||||||||| |
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| T |
16052307 |
cttaggttcaagtcttgga |
16052325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 242
Target Start/End: Original strand, 31682480 - 31682552
Alignment:
| Q |
170 |
gtcatcaatttcgatatgttggatatgagccaccttgcgccagtagtttcctgtcttgggatcaagtcttgga |
242 |
Q |
| |
|
|||||||||||| ||||| | |||||||||||||||| |||||| |||||||||| ||| | |||||||||| |
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|
| T |
31682480 |
gtcatcaatttctatatgaggaatatgagccaccttgcaccagtactttcctgtctcgggtttaagtcttgga |
31682552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 242
Target Start/End: Complemental strand, 31895952 - 31895880
Alignment:
| Q |
170 |
gtcatcaatttcgatatgttggatatgagccaccttgcgccagtagtttcctgtcttgggatcaagtcttgga |
242 |
Q |
| |
|
|||||||||||| ||||| | |||||||||||||||| |||||| |||||||||| ||| | |||||||||| |
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| T |
31895952 |
gtcatcaatttctatatgaggaatatgagccaccttgcaccagtactttcctgtctcgggtttaagtcttgga |
31895880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 242
Target Start/End: Complemental strand, 31900536 - 31900464
Alignment:
| Q |
170 |
gtcatcaatttcgatatgttggatatgagccaccttgcgccagtagtttcctgtcttgggatcaagtcttgga |
242 |
Q |
| |
|
|||||||||||| ||||| | |||||||||||||||| |||||| |||||||||| ||| | |||||||||| |
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| T |
31900536 |
gtcatcaatttctatatgaggaatatgagccaccttgcaccagtactttcctgtctcgggtttaagtcttgga |
31900464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 242
Target Start/End: Complemental strand, 31916245 - 31916173
Alignment:
| Q |
170 |
gtcatcaatttcgatatgttggatatgagccaccttgcgccagtagtttcctgtcttgggatcaagtcttgga |
242 |
Q |
| |
|
|||||||||||| ||||| | |||||||||||||||| |||||| |||||||||| ||| | |||||||||| |
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|
| T |
31916245 |
gtcatcaatttctatatgaggaatatgagccaccttgcaccagtactttcctgtctcgggtttaagtcttgga |
31916173 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 242
Target Start/End: Complemental strand, 31949893 - 31949821
Alignment:
| Q |
170 |
gtcatcaatttcgatatgttggatatgagccaccttgcgccagtagtttcctgtcttgggatcaagtcttgga |
242 |
Q |
| |
|
|||||||||||| ||||| | |||||||||||||||| |||||| |||||||||| ||| | |||||||||| |
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| T |
31949893 |
gtcatcaatttctatatgaggaatatgagccaccttgcaccagtactttcctgtctcgggtttaagtcttgga |
31949821 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 242
Target Start/End: Original strand, 16057462 - 16057530
Alignment:
| Q |
174 |
tcaatttcgatatgttggatatgagccaccttgcgccagtagtttcctgtcttgggatcaagtcttgga |
242 |
Q |
| |
|
|||||||| |||||||| |||| |||||||||| |||| || ||||| ||||||| |||||||||||| |
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|
| T |
16057462 |
tcaatttctatatgttgaatataagccaccttgagccaatacattcctatcttgggttcaagtcttgga |
16057530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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