View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5053-Insertion-1 (Length: 1008)

Name: NF5053-Insertion-1
Description: NF5053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5053-Insertion-1
NF5053-Insertion-1
[»] chr5 (8 HSPs)
chr5 (176-602)||(16434740-16435166)
chr5 (634-1008)||(16434299-16434683)
chr5 (8-82)||(16435167-16435241)
chr5 (879-915)||(8420035-8420071)
chr5 (877-916)||(38749577-38749616)
chr5 (863-918)||(39342446-39342501)
chr5 (879-916)||(22423826-22423863)
chr5 (864-913)||(41600891-41600940)
[»] chr8 (7 HSPs)
chr8 (196-459)||(25831917-25832180)
chr8 (196-306)||(25466188-25466296)
chr8 (196-291)||(25565827-25565922)
chr8 (879-916)||(8798845-8798882)
chr8 (879-915)||(22651984-22652020)
chr8 (876-913)||(3508057-3508094)
chr8 (879-912)||(20853782-20853815)
[»] chr6 (3 HSPs)
chr6 (878-916)||(15443702-15443740)
chr6 (879-916)||(24115861-24115898)
chr6 (879-916)||(33468396-33468433)
[»] chr7 (4 HSPs)
chr7 (877-916)||(5938478-5938517)
chr7 (877-918)||(11072304-11072345)
chr7 (879-916)||(14077448-14077485)
chr7 (879-916)||(14387476-14387513)
[»] chr4 (3 HSPs)
chr4 (877-916)||(19230323-19230362)
chr4 (878-915)||(23915136-23915173)
chr4 (879-916)||(32273540-32273577)
[»] chr3 (2 HSPs)
chr3 (863-913)||(10504920-10504970)
chr3 (876-913)||(25908856-25908893)
[»] chr1 (1 HSPs)
chr1 (877-911)||(48785283-48785317)
[»] scaffold0050 (1 HSPs)
scaffold0050 (879-916)||(70286-70323)
[»] chr2 (1 HSPs)
chr2 (878-915)||(44605154-44605191)


Alignment Details
Target: chr5 (Bit Score: 407; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 176 - 602
Target Start/End: Complemental strand, 16435166 - 16434740
Alignment:
Q  176 aaagggcgaaaagaattctaaccttttgagaaaggaagaaccaaaacaacctgcatagtgacattatttggaggaagctgcaaacgaagaggataaagct 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  16435166 aaagggcgaaaagaattctaaccttttgagaaaggaagaaccaaaacaacctgcatagtgacattatttggaggaagctgcaaacgaagagggtaaagct 16435067  T
Q  276 ttccattcaaaggactcttagtacacacaatgattccctctaaccctgtctcttcctcaaacttcttgctcaattcctcaactccattccctttgaaaac 375  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  16435066 ttccattcaaaggactcttagtacacacaatgattccctctaaccctgtctcttcctcaaacttcttgctcaattcttcaactccattccctttgaaaac 16434967  T
Q  376 caaagaatatccctgcacaccttcatcacttacttctccatcatcttcagcaacatagtagtagataattcgcccctccatcttcctaggtgatgcatca 475  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  16434966 caaagaatatccctgcacaccttcatcacttacttctgcatcatcttcagcaacatagtagtagataattcgcccctccatcttcctaggagatgcatca 16434867  T
Q  476 tccttcgactgcaaataaaaccaatcacaattaaccaaagaagcaaaaaaccaaataaaatatacttcgttcgggttcgaaccgaggactttaactcatt 575  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  16434866 tccttcgactgcaaataaaaccaatcacaattaaccaaagaagcaaaaaaccaaataaaatatacttggttcgggttcgaaccgaggactttaactcatt 16434767  T
Q  576 atcatttactttaaaccaattgagtta 602  Q
    |||||||||||||||||||||||||||    
T  16434766 atcatttactttaaaccaattgagtta 16434740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 634 - 1008
Target Start/End: Complemental strand, 16434683 - 16434299
Alignment:
Q  634 atcaacatcacttcattaa-ctaaattggtgattgaatcaaaattccaagcttaaccaagataacccagataaaagatattgatacttctcaaacaataa 732  Q
    ||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16434683 atcaacagcacttcataaaactaaattggtgattgaatcaaaattccaagcttaaccaagataacccagataaaagatattgatacttctcaaacaataa 16434584  T
Q  733 atcacacatatctaatttcaagcaaaataataacatcccagatnnnnnnnnttgacacttttaaatgaaccaannnnnnnnnn-----atagaaaaaaca 827  Q
    ||||||  ||||| |||||||||||||||||||||||||||||        ||||||||||| ||||||||||               ||||||||||||    
T  16434583 atcaca--tatctgatttcaagcaaaataataacatcccagataaaaaaaattgacacttttgaatgaaccaatttttttttttttttatagaaaaaaca 16434486  T
Q  828 tatcctatgaagtgcttaaacaccgaccttgaccc-gacacgtcaactgtgataataatttgaaaaaataacataattcaatataattatgtcacacaca 926  Q
    |||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  16434485 tatcctatgaagtgcttagacaccgaccttgaccccgacacgtcaactctgataataatttgaaaaaataacataattcaatataatcatgtcacacaca 16434386  T
Q  927 cccaatctgatgagcatttgttcttcatagtacatatctaatttc-agct-aatcaaa--cacccacataaatc-aattgatacttt 1008  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||   ||||||||||||| ||||||||||||    
T  16434385 cccaatctgatgagcatttgttcttcatagtacatatctaatttcaagctaaatcaaaacaacccacataaatcaaattgatacttt 16434299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 16435241 - 16435167
Alignment:
Q  8 gtaagaaatactgtaaaacaagaaagtaaatgatgtatataatacaatgcaagcactcaaattagaacaaccaaa 82  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16435241 gtaagaaatactgtaaaacaagaaagtaaatgatgtatataatacaatgcaagcactcaaattagaacaaccaaa 16435167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 879 - 915
Target Start/End: Original strand, 8420035 - 8420071
Alignment:
Q  879 taataatttgaaaaaataacataattcaatataatta 915  Q
    |||||||||||||||||||||||||||||| ||||||    
T  8420035 taataatttgaaaaaataacataattcaatgtaatta 8420071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 877 - 916
Target Start/End: Complemental strand, 38749616 - 38749577
Alignment:
Q  877 gataataatttgaaaaaataacataattcaatataattat 916  Q
    ||||||||||||||||||| |||||||||||| |||||||    
T  38749616 gataataatttgaaaaaatgacataattcaatgtaattat 38749577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 863 - 918
Target Start/End: Original strand, 39342446 - 39342501
Alignment:
Q  863 gacacgtcaactgtgataataatttgaaaaaataacataattcaatataattatgt 918  Q
    ||||||||||||  ||||||||||||||||| | |||||||||||| |||| ||||    
T  39342446 gacacgtcaactccgataataatttgaaaaattgacataattcaatgtaatgatgt 39342501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 879 - 916
Target Start/End: Complemental strand, 22423863 - 22423826
Alignment:
Q  879 taataatttgaaaaaataacataattcaatataattat 916  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  22423863 taataatttgagaaaatcacataattcaatataattat 22423826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 864 - 913
Target Start/End: Original strand, 41600891 - 41600940
Alignment:
Q  864 acacgtcaactgtgataataatttgaaaaaataacataattcaatataat 913  Q
    ||||||||||  |||||||||||||| ||||| ||| |||||||||||||    
T  41600891 acacgtcaacattgataataatttgagaaaattacacaattcaatataat 41600940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 8e-30; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 196 - 459
Target Start/End: Original strand, 25831917 - 25832180
Alignment:
Q  196 accttttgagaaaggaagaaccaaaacaacctgcatagtgacattatttggaggaagctgcaaacgaagaggataaagctttccattcaaaggactctta 295  Q
    ||||||||||  |||||| ||||||||||||||||| || ||||| ||||||||||| |||||||||||||| ||||| |||||||||||||||||   |    
T  25831917 accttttgagttaggaaggaccaaaacaacctgcatggtaacattgtttggaggaagatgcaaacgaagagggtaaagttttccattcaaaggacttcga 25832016  T
Q  296 gtacacacaatgattccctctaaccctgtctcttcctcaaacttcttgctcaattcctcaactccattccctttgaaaaccaaagaatatccctgcacac 395  Q
     |||||||||| | ||| || |  |||||||||||| | |||||     |||  | ||| ||  ||||||| ||||| ||||| ||||| |||||||||     
T  25832017 ctacacacaataactccgtcaagtcctgtctcttccacgaacttacgagtcagctgctcgacgtcattcccattgaacaccaaggaatagccctgcacat 25832116  T
Q  396 cttcatcacttacttctccatcatcttcagcaacatagtagtagataattcgcccctccatctt 459  Q
      ||||||   || ||||||| ||| |||||||||| |||||| ||| ||| ||||||||||||    
T  25832117 tctcatcatccacatctccattatcctcagcaacatggtagtatatagttctcccctccatctt 25832180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 196 - 306
Target Start/End: Original strand, 25466188 - 25466296
Alignment:
Q  196 accttttgagaaaggaagaaccaaaacaacctgcatagtgacattatttggaggaagctgcaaacgaagaggataaagctttccattcaaaggactctta 295  Q
    |||||||||| | ||||| ||||||||||||||||| || ||||| ||||||||||| |||||||||||||  ||||| ||||||||||||||||| | |    
T  25466188 accttttgaggagggaaggaccaaaacaacctgcatggtaacattgtttggaggaagatgcaaacgaagag--taaagttttccattcaaaggactttga 25466285  T
Q  296 gtacacacaat 306  Q
     ||||||||||    
T  25466286 ttacacacaat 25466296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 196 - 291
Target Start/End: Original strand, 25565827 - 25565922
Alignment:
Q  196 accttttgagaaaggaagaaccaaaacaacctgcatagtgacattatttggaggaagctgcaaacgaagaggataaagctttccattcaaaggact 291  Q
    |||||||||| ||||||| ||||||||||||||||| || ||||| ||||||||||| ||||| |||||| | ||||| |||||||||||||||||    
T  25565827 accttttgaggaaggaaggaccaaaacaacctgcatggtaacattgtttggaggaagatgcaagcgaagatggtaaagttttccattcaaaggact 25565922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 879 - 916
Target Start/End: Complemental strand, 8798882 - 8798845
Alignment:
Q  879 taataatttgaaaaaataacataattcaatataattat 916  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  8798882 taataatttgagaaaataacataattcaatataattat 8798845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 879 - 915
Target Start/End: Original strand, 22651984 - 22652020
Alignment:
Q  879 taataatttgaaaaaataacataattcaatataatta 915  Q
    ||||||||||||||||| |||||||||||||||||||    
T  22651984 taataatttgaaaaaatcacataattcaatataatta 22652020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 876 - 913
Target Start/End: Original strand, 3508057 - 3508094
Alignment:
Q  876 tgataataatttgaaaaaataacataattcaatataat 913  Q
    |||||||||||||| |||||||||||||||||| ||||    
T  3508057 tgataataatttgagaaaataacataattcaatgtaat 3508094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 879 - 912
Target Start/End: Original strand, 20853782 - 20853815
Alignment:
Q  879 taataatttgaaaaaataacataattcaatataa 912  Q
    |||||||||||||||||| |||||||||||||||    
T  20853782 taataatttgaaaaaatatcataattcaatataa 20853815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 878 - 916
Target Start/End: Original strand, 15443702 - 15443740
Alignment:
Q  878 ataataatttgaaaaaataacataattcaatataattat 916  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  15443702 ataataatttgagaaaataacataattcaatataattat 15443740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 879 - 916
Target Start/End: Complemental strand, 24115898 - 24115861
Alignment:
Q  879 taataatttgaaaaaataacataattcaatataattat 916  Q
    ||||||||| ||||||| ||||||||||||||||||||    
T  24115898 taataatttcaaaaaatcacataattcaatataattat 24115861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 879 - 916
Target Start/End: Complemental strand, 33468433 - 33468396
Alignment:
Q  879 taataatttgaaaaaataacataattcaatataattat 916  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  33468433 taataatttgaaaaaataacttaattcaatgtaattat 33468396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 877 - 916
Target Start/End: Original strand, 5938478 - 5938517
Alignment:
Q  877 gataataatttgaaaaaataacataattcaatataattat 916  Q
    ||||||||||||| |||||||||||||||| |||||||||    
T  5938478 gataataatttgataaaataacataattcagtataattat 5938517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 877 - 918
Target Start/End: Original strand, 11072304 - 11072345
Alignment:
Q  877 gataataatttgaaaaaataacataattcaatataattatgt 918  Q
    ||||||||||||||||||  | ||||||||||||||||||||    
T  11072304 gataataatttgaaaaaaatatataattcaatataattatgt 11072345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 879 - 916
Target Start/End: Complemental strand, 14077485 - 14077448
Alignment:
Q  879 taataatttgaaaaaataacataattcaatataattat 916  Q
    |||| ||||||||||||||||||||| |||||||||||    
T  14077485 taattatttgaaaaaataacataatttaatataattat 14077448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 879 - 916
Target Start/End: Complemental strand, 14387513 - 14387476
Alignment:
Q  879 taataatttgaaaaaataacataattcaatataattat 916  Q
    |||| ||||||||||||||||||||| |||||||||||    
T  14387513 taattatttgaaaaaataacataatttaatataattat 14387476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 877 - 916
Target Start/End: Complemental strand, 19230362 - 19230323
Alignment:
Q  877 gataataatttgaaaaaataacataattcaatataattat 916  Q
    ||||||||||||| |||||||||||||||||| |||||||    
T  19230362 gataataatttgagaaaataacataattcaatgtaattat 19230323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 878 - 915
Target Start/End: Original strand, 23915136 - 23915173
Alignment:
Q  878 ataataatttgaaaaaataacataattcaatataatta 915  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  23915136 ataatcatttgagaaaataacataattcaatataatta 23915173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 879 - 916
Target Start/End: Complemental strand, 32273577 - 32273540
Alignment:
Q  879 taataatttgaaaaaataacataattcaatataattat 916  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  32273577 taataatttgaaaaaataacataattcagaataattat 32273540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 863 - 913
Target Start/End: Complemental strand, 10504970 - 10504920
Alignment:
Q  863 gacacgtcaactgtgataataatttgaaaaaataacataattcaatataat 913  Q
    |||||||||||   ||||||||||||||||||| | |||||||||||||||    
T  10504970 gacacgtcaacaccgataataatttgaaaaaattatataattcaatataat 10504920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 876 - 913
Target Start/End: Complemental strand, 25908893 - 25908856
Alignment:
Q  876 tgataataatttgaaaaaataacataattcaatataat 913  Q
    ||||| |||||||||||||| |||||||||||||||||    
T  25908893 tgatagtaatttgaaaaaatgacataattcaatataat 25908856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 877 - 911
Target Start/End: Complemental strand, 48785317 - 48785283
Alignment:
Q  877 gataataatttgaaaaaataacataattcaatata 911  Q
    ||||||||||||| |||||||||||||||||||||    
T  48785317 gataataatttgagaaaataacataattcaatata 48785283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 879 - 916
Target Start/End: Original strand, 70286 - 70323
Alignment:
Q  879 taataatttgaaaaaataacataattcaatataattat 916  Q
    |||||||||||||||||||||||||||| | |||||||    
T  70286 taataatttgaaaaaataacataattcagtgtaattat 70323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 878 - 915
Target Start/End: Complemental strand, 44605191 - 44605154
Alignment:
Q  878 ataataatttgaaaaaataacataattcaatataatta 915  Q
    |||||||||||| |||||||||||||||||| ||||||    
T  44605191 ataataatttgagaaaataacataattcaatgtaatta 44605154  T

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