View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5053-Insertion-10 (Length: 718)
Name: NF5053-Insertion-10
Description: NF5053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5053-Insertion-10 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 450; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 261 - 718
Target Start/End: Original strand, 35380 - 35837
Alignment:
| Q |
261 |
gccatccatctcaacaatattttcttttttctttcagccagcacgttaactggctgccattttgctgttaccgctctcgttggtatactctccaatgcta |
360 |
Q |
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| T |
35380 |
gccatccatctcaacaatattttcttttttctttcagccagcacgttaactggctgccattttgctgttaccgctctcgttggtatactctccaatgcta |
35479 |
T |
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| Q |
361 |
ccggttactcgtcttcatcaaagcatgtccctatgtgggagcttctttggttctctatggtcgccaatttgtctatcactgccatgaattttagcctaat |
460 |
Q |
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| T |
35480 |
ccggttactcgtcttcatcaaagcatgtccctatgtgggagcttctttggttctctatggtcgccaatttgtctatcactgccatgaattttagcctaat |
35579 |
T |
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| Q |
461 |
gctaaactctgttggattctaccaagtattattctttcgttctttctttattcatcaactactttcattcagtttttatatgtattttgtaaggaccttc |
560 |
Q |
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| T |
35580 |
gctaaactctgttggattctaccaagtatttttctttcgttctttctttattcatcaactactttcattcagtttttatatgtattttgtaaggaccttc |
35679 |
T |
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| Q |
561 |
atacttggataacaacccatatgatatacacctaggatataaagttgttaattataaccttttatcacttgattgaaatcacttgtccctttttgtctcc |
660 |
Q |
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| T |
35680 |
atacttggataacaacccatatgatatacacctaggatataaagttgttaattataaccttttatcacttgattgaaatcacttgtccctttttgtctcc |
35779 |
T |
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| Q |
661 |
tttcatgtctattcttttgaaaaatgacaatttgtcacattgttttcaaactcgtatg |
718 |
Q |
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| T |
35780 |
tttcatgtctattcttttgaaaaatgacaatttgtgacattgttttcaaactcgtatg |
35837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 8 - 245
Target Start/End: Original strand, 35119 - 35356
Alignment:
| Q |
8 |
cggttatccttcaaattgattaatgttgatgttgttattattattatagatagagagatataatggagaatgtagtagtaaagaaaaaagcatctttatc |
107 |
Q |
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| T |
35119 |
cggttatccttcaaattgattaatgttgttgttgttattattattatagatagagagatataatggagaatgtagtagtaaagaaaaaagcatctttatc |
35218 |
T |
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| Q |
108 |
taatgttggagcatgggggatgaacattgtcagctccgttggaattatcatcgccaacaaacaactcatgtccaacaatggctatgttttcacttttggt |
207 |
Q |
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| T |
35219 |
taatgttggagcatgggggatgaacattgtcagctccgttggaattatcatcgctaacaaacaactcatgtccaacaatggctatgttttcacttttggt |
35318 |
T |
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| Q |
208 |
cagccaccttctctcacacattcattcattgttgatgt |
245 |
Q |
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| T |
35319 |
cagccaccttctctcacacattcattcattgttgatgt |
35356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 8e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 113 - 203
Target Start/End: Complemental strand, 8677533 - 8677443
Alignment:
| Q |
113 |
ttggagcatgggggatgaacattgtcagctccgttggaattatcatcgccaacaaacaactcatgtccaacaatggctatgttttcacttt |
203 |
Q |
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| T |
8677533 |
ttggagcatggggtatgaacgttgtgagttccgttggaattatcatggctaataaacagcttatgtccaacaatggctatgctttcacttt |
8677443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 321 - 489
Target Start/End: Complemental strand, 8677325 - 8677160
Alignment:
| Q |
321 |
tttgctgttaccgctctcgttggtatactctccaatgctaccggttactcgtcttcatcaaagcatgtccctatgtgggagcttctttggttctctatgg |
420 |
Q |
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| T |
8677325 |
tttgctgttactgctcttgtcggtctcgtctcaaatgctaccggttattctgcttct---aagcatgttcctttgtgggagcttatttggttctctgctg |
8677229 |
T |
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| Q |
421 |
tcgccaatttgtctatcactgccatgaattttagcctaatgctaaactctgttggattctaccaagtat |
489 |
Q |
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| T |
8677228 |
ttgccaatatatctatcaccgggatgaacttgagcctcatgctcaattccgttggattctaccaagtat |
8677160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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