View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5053-Insertion-13 (Length: 599)
Name: NF5053-Insertion-13
Description: NF5053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5053-Insertion-13 |
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Alignment Details
Target: chr8 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 8 - 594
Target Start/End: Original strand, 30842344 - 30842932
Alignment:
| Q |
8 |
tcgaatgcaaagagaaaaagagagatgctcttaaactcttagaacacgaaaaagttcatgttctatttgatgatttcattctcaaagcttctaattgcat |
107 |
Q |
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| T |
30842344 |
tcgaatgcaaagagaaaaagagagatgctcttaaactcttagaactcgaaaaagttcatgttctgtttgatgatttcattctcaaagcttctaattgcat |
30842443 |
T |
|
| Q |
108 |
ttcgagttctaataagtcccgtgatgctgcttcttcttcttcttccaagaattttgtttcttcttcgaatttattcgataaagaaggtgtcgagattaag |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
30842444 |
ttcgagttctaataagtcccgtgatgctgcttcttcttcttcttccaagaattttgtttcttcttcgagtttattcgataaagaaggtgtcgagattaag |
30842543 |
T |
|
| Q |
208 |
gagaagaagggttcaaagttagcattatttaccaaggatgacagttatttggtgaataataaggctatgtctacattcaagtttaatactgatgcttatg |
307 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30842544 |
gagaagaagggttcaaagttagcattatttactaaggatgacagttatttggtgaataataaggctatgtctacattcaagtttaatactgatgcttatg |
30842643 |
T |
|
| Q |
308 |
caattggacacaggttatcatccaaaccaagtatagtggataactcctcgatgaaacatgcatccacttcaggtaaatcaattcaattatattggtagaa |
407 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30842644 |
caattggacacaagttatcatccaaaccaagtatagtggataactcctcgatgaaacatgcatccacttcaggtaaatcaattcaattatattggtagaa |
30842743 |
T |
|
| Q |
408 |
aaattgctgacaaatatttgccatgacatata---ttgttgtgattaaatttgttgaagttgagaatgtctatttttcaaaagaaattgaaggttatatt |
504 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
30842744 |
aaattgctgacaaatatttgccatgacatatattgttgttgtgaataaatttgttgaagttgagaatctctatttttcaaaagaaattgaaggttgtatt |
30842843 |
T |
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| Q |
505 |
actatagttatgtggatgttatgcttaa-cagtgtagaatttctctttacgccctcaatatctctaagaccccgaaatcataacattgtag |
594 |
Q |
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|||||||| |||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
30842844 |
actatagt--tgtggatgttatgcttaaccagtgtagaatttctctttgcgccttcaatatctctaagaccccgaaatcataacattgtag |
30842932 |
T |
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