View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5053-Insertion-14 (Length: 585)
Name: NF5053-Insertion-14
Description: NF5053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5053-Insertion-14 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 510; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 8 - 585
Target Start/End: Original strand, 42516255 - 42516832
Alignment:
| Q |
8 |
atgtatcctacaaaattgttattggtgagttgattactcttattgcccttcattttggtcatgatttctttgtggcagatattaacttgtgctctaaaaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42516255 |
atgtatcctacaaaattgttattggtgagttgattactcttattgcccttcattttggtcatgatttctttgtggcagatattaacttgtgctctaaaaa |
42516354 |
T |
|
| Q |
108 |
cacgtgttaaaaatttacaagtataaattcatcttataaattggctattcaatttcataagagcataaaaaattgatttctaagagcataaaaatgtgcc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42516355 |
cacgtgttaaaaatttacaagtataaattcatcttataaattggctattcaatttcataagagcataaaaaattgatttctaagagcataaaaatgtgcc |
42516454 |
T |
|
| Q |
208 |
cttagggtaagaattggctttacaannnnnnnnnnnngccagaaatgaaggtagtttcgacactggcattgagacttgtcttgcaatgaaaatgagtgtc |
307 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42516455 |
cttagggtaagaattagctttacaattttttgtttttgccagaaatcaaggtagtttcgacactggcattgagacttgtcttgcaatgaaaatgagtgtc |
42516554 |
T |
|
| Q |
308 |
aaagagggtgtttgatatttcttgttgctcaattattctgacattcctcacccttaacctgtaaaggagcaatcactattccataaatcagcctctctat |
407 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42516555 |
aaagagggtgtttgttatttcttgttgctcgattattctgacattcctcacccttgacctgtaaaggagcaatcactattccataaatcagcctctctat |
42516654 |
T |
|
| Q |
408 |
tattgcaaataattaatcacaataatttgtatatcaatcatttttattagttgattcatagaatatgcttgccatgatttgtaataagttgttattatgt |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42516655 |
tattgcaaataattaatcacaataatttgtatatcaatcatttattttagttgattcatagaatatgcttgccatgatttgtaataagttgttattatgt |
42516754 |
T |
|
| Q |
508 |
gttaccgtacatgacatgattgagctacactgattagaaccgttctgattttcttgttcaactctattttctttttga |
585 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
42516755 |
gttaccgtacatgacatgattgagctacactgattagaaccgttctgattttcttgttcaactctattttcttcttga |
42516832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University