View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5053-Insertion-15 (Length: 520)
Name: NF5053-Insertion-15
Description: NF5053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5053-Insertion-15 |
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| [»] chr2 (2 HSPs) |
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| [»] chr5 (3 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 8 - 376
Target Start/End: Original strand, 9283347 - 9283721
Alignment:
| Q |
8 |
gtatgtgcctgtgagatgatgagggtgattttgtt--gtccaaaacattgtgtgttacttagctgtgcaccgtagatgtggataaagcgctaggtttatt |
105 |
Q |
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| T |
9283347 |
gtatgtgcctgtgagatgatgagggtgattttgttttgtccaaaacattgtgtgttacttagttgtgcaccgtagatgtggataaagcgctaggtttatt |
9283446 |
T |
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| Q |
106 |
caatgtgtttcagtggatcagtgatatgcaatttgataacgtcgacttcgtgcttgattcaaaaacaactacatatgcattccatatgaaccgggttgat |
205 |
Q |
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| T |
9283447 |
tcatgtgtttcagtggatcagtgatatgcaatttgataatgccaacttcgtgcttgattcaaaaacaactatatatgcattccatatgaaccgggttgat |
9283546 |
T |
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| Q |
206 |
gccgcggagtttggtcgcgtcataacaacttgcaggaattttttcgccacccaatttacaaactataaggttgcatttaataggagacaagcaaacaagg |
305 |
Q |
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| T |
9283547 |
gctacggagtttggtcgcgtcataacaacttgaaggaattttttcgccacccaatttacaaactataaggttgcatttaataggagacaagcaaacaagg |
9283646 |
T |
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| Q |
306 |
tcgctcttgcttttgtagaggtagccacattatgagctagttccactac----ttattttaatgtacctcgttgt |
376 |
Q |
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| T |
9283647 |
tggctcatgcttttgcagaggtagccacattatgagctagttccactacttaattattttaatgtacctcattgt |
9283721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 386 - 520
Target Start/End: Original strand, 2346350 - 2346485
Alignment:
| Q |
386 |
atgtacttgagagagtgcagctgcacacccttacttcttgataattataccaaaattt-taattatttttaatttgcatcccctggataattaccattgc |
484 |
Q |
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| T |
2346350 |
atgtacttgagagggtgcagctgcacaccctgacttcttgataattataccaaatttcctacttatttctaatttgcatcccctggataattaccattgc |
2346449 |
T |
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| Q |
485 |
accagttcagctcaatttctcacattttgtcacact |
520 |
Q |
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| T |
2346450 |
accagttcagctcaatttctcacattttgtcacact |
2346485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 121 - 206
Target Start/End: Complemental strand, 40861281 - 40861197
Alignment:
| Q |
121 |
gatcagtgatatgcaatttgataacgtcgacttcgtgcttgattcaaaaacaactacatatgcattccatatgaaccgggttgatg |
206 |
Q |
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| T |
40861281 |
gatcagtgatatgcaatttgataatgttgacttcgggcttgattc-aaaacaactacatatgctttccatacgacccgagttgatg |
40861197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 8e-47; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 386 - 520
Target Start/End: Complemental strand, 32816370 - 32816235
Alignment:
| Q |
386 |
atgtacttgagagagtgcagctgcacacccttacttcttgataattataccaaaattt-taattatttttaatttgcatcccctggataattaccattgc |
484 |
Q |
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||||||||||||| ||||||||||||||||| |||| ||||||||||||||||| || || |||||| ||||||||||||||||||||||||||||||| |
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| T |
32816370 |
atgtacttgagagggtgcagctgcacaccctgactttttgataattataccaaatttcctatttatttctaatttgcatcccctggataattaccattgc |
32816271 |
T |
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| Q |
485 |
accagttcagctcaatttctcacattttgtcacact |
520 |
Q |
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| T |
32816270 |
accagttcagctcaatttttcacattttgtcacact |
32816235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 386 - 520
Target Start/End: Original strand, 41661983 - 41662118
Alignment:
| Q |
386 |
atgtacttgagagagtgcagctgcacacccttacttcttgataattataccaaaattt-taattatttttaatttgcatcccctggataattaccattgc |
484 |
Q |
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| T |
41661983 |
atgtacttgagagggtgcagctgcgcaccctgacttcttgataattataccaaatttcctacttatttctaatttgcatcccctggataattaccattgc |
41662082 |
T |
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| Q |
485 |
accagttcagctcaatttctcacattttgtcacact |
520 |
Q |
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| T |
41662083 |
actagttcagctcaatttttcacattttgtcacact |
41662118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 329 - 376
Target Start/End: Original strand, 8274746 - 8274793
Alignment:
| Q |
329 |
gccacattatgagctagttccactacttattttaatgtacctcgttgt |
376 |
Q |
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| T |
8274746 |
gccacattattagctagttccactacttattcttatgtacctcgttgt |
8274793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 386 - 520
Target Start/End: Original strand, 9779673 - 9779808
Alignment:
| Q |
386 |
atgtacttgagagagtgcagctgcacacccttacttcttgataattataccaaaattttaa-ttatttttaatttgcatcccctggataattaccattgc |
484 |
Q |
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||||||||||||| ||||||||||||||||| ||||||||| ||||||||||| |||| | |||||| |||||||||| ||||||||||||||||||| |
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| T |
9779673 |
atgtacttgagagggtgcagctgcacaccctgacttcttgaacattataccaaattttttacttatttctaatttgcatagcctggataattaccattgc |
9779772 |
T |
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| Q |
485 |
accagttcagctcaatttctcacattttgtcacact |
520 |
Q |
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| T |
9779773 |
accagttcagctcaatttctcacattttgtcacact |
9779808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 227 - 318
Target Start/End: Original strand, 13672194 - 13672285
Alignment:
| Q |
227 |
ataacaacttgcaggaattttttcgccacccaatttacaaactataaggttgcatttaataggagacaagcaaacaaggtcgctcttgcttt |
318 |
Q |
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|||||| |||||| |||| ||||||| | ||| ||| ||||| | |||||| ||||||||||||||||||||| ||||||||| |||||| |
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| T |
13672194 |
ataacagcttgcaagaatactttcgcctctcaagttagaaactctgaggttgagtttaataggagacaagcaaacgaggtcgctcatgcttt |
13672285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 329 - 374
Target Start/End: Complemental strand, 12698976 - 12698931
Alignment:
| Q |
329 |
gccacattatgagctagttccactacttattttaatgtacctcgtt |
374 |
Q |
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||||||| || |||||||||||||||||||| |||||||||||||| |
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| T |
12698976 |
gccacatcattagctagttccactacttattataatgtacctcgtt |
12698931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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